1
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Nowroz S, Nasrin SR, Kabir AMR, Yamashita T, Kusumoto T, Taira J, Tani M, Ichikawa M, Sada K, Kakugo A. Role of tubulin C-terminal tail on mechanical properties of microtubule. Biochem Biophys Res Commun 2024; 706:149761. [PMID: 38479245 DOI: 10.1016/j.bbrc.2024.149761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 02/29/2024] [Accepted: 03/06/2024] [Indexed: 03/24/2024]
Abstract
Tubulin C-terminal tail (CTT) is a disordered segment extended from each tubulin monomer of αβ tubulin heterodimers, the building blocks of microtubules. The tubulin CTT contributes to the cellular function of microtubules such as intracellular transportation by regulating their interaction with other proteins and cell shape regulation by controlling microtubule polymerization dynamics. Although the mechanical integrity of microtubules is crucial for their functions, the role of tubulin CTT on microtubule mechanical properties has remained elusive. In this work, we investigate the role of tubulin CTTs in regulating the mechanical properties of microtubules by estimating the persistence lengths and investigating the buckling behavior of microtubules with and without CTT. We find that microtubules with intact CTTs exhibit twice the rigidity of microtubules lacking tubulin CTTs. Our study will widen the scope of altering microtubule mechanical properties for its application in nano bio-devices and lead to novel therapeutic approaches for neurodegenerative diseases with altered microtubule properties.
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Affiliation(s)
- Senjuti Nowroz
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan
| | - Syeda Rubaiya Nasrin
- Department of Physics, Division of Physics and Astronomy, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan
| | | | - Takefumi Yamashita
- Laboratory for Systems Biology and Medicine, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, 153-8904, Japan; Deaprtment of Physical Chemistry, School of Pharmacy and Pharmaceutical Sciences, Hoshi University, Tokyo, 142-8501, Japan
| | - Tomoichiro Kusumoto
- Department of Bioscience and Bioinformatics, Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, 820-8502, Japan
| | - Junichi Taira
- Department of Bioscience and Bioinformatics, Graduate School of Computer Science and Systems Engineering, Kyushu Institute of Technology, Iizuka, 820-8502, Japan
| | - Marie Tani
- Department of Physics, Division of Physics and Astronomy, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan
| | - Masatoshi Ichikawa
- Department of Physics, Division of Physics and Astronomy, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan; Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Akira Kakugo
- Department of Physics, Division of Physics and Astronomy, Graduate School of Science, Kyoto University, Kyoto, 606-8502, Japan.
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2
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Anan S, Kokado K, Sada K. Predictable Synthesis of 3D Polymer Networks Using Crystal Component-Linking. Macromol Rapid Commun 2024:e2400058. [PMID: 38555523 DOI: 10.1002/marc.202400058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Revised: 03/25/2024] [Indexed: 04/02/2024]
Abstract
Controlled synthesis of 3D polymer networks presents a significant challenge because of the complexity of the polymerization reaction in solution. In this study, a polymerization system that facilitates the prediction of a polymer network structure via percolation simulations is realized. The most significant difference between general percolation simulations and experimental polymerization systems is the mobility of the molecules during the reaction. A crystal component-linking method that connects the precisely arranged monomer as a supramolecular crystalline state to imitate the simple percolation theory is adopted. The percolation simulation based on the crystal structure of the arranged monomers is used to accurately calculate the gelation point, gel fraction, degree of swelling, and atomic formula, which correspond with the experimental results. This suggests that the network structures polymerized via the crystal component-linking method can be predicted precisely by a simple percolation simulation. Further, the percolation simulation predicts the structures of the loop, branched polymer, and crosslinking point, which are difficult to measure experimentally. The polymerization of precisely-arranged immobilized monomers in supramolecular structures is promising in synthesizing precisely controlled polymer networks.
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Affiliation(s)
- Shizuka Anan
- Department of Advanced Science and Technology, Faculty of Engineering, Toyota Technological Institute, 2-12-1 Hisakata, Tempaku-ku, Nagoya, 468-8511, Japan
| | - Kenta Kokado
- Department of Advanced Science and Technology, Faculty of Engineering, Toyota Technological Institute, 2-12-1 Hisakata, Tempaku-ku, Nagoya, 468-8511, Japan
| | - Kazuki Sada
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita10 Nishi8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita13 Nishi8, Kita-ku, Sapporo, Hokkaido, 060-8628, Japan
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3
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Sasaki K, Saito D, Yoshida M, Tanaka F, Kobayashi A, Sada K, Kato M. Chromic triboluminescence of self-assembled platinum(II) complexes. Chem Commun (Camb) 2023; 59:6745-6748. [PMID: 37194401 DOI: 10.1039/d3cc01525d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
A series of Pt(II) complexes bearing N-heterocyclic carbenes, [Pt(CN)2(Rim-Mepy)] (Rim-MepyH+ = 3-alkyl-1-(4-methyl-(2-pyridinyl))-1H-imidazolium, R = Me, Et, iPr, or tBu), exhibits triboluminescence in the visible range from blue to red, as well as the corresponding intense photoluminescence. Remarkably, among the complexes, the iPr-substituted one exhibits chromic triboluminescence behaviour during the process of rubbing and also vapour exposure.
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Affiliation(s)
- Kono Sasaki
- Graduate School of Chemical Sciences and Engineering, and Department of Chemistry, Faculty of Science, Hokkaido University, North-10 West-8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
- Department of Applied Chemistry for Environment, School of Biological and Environmental Sciences, Kwansei Gakuin University, 1 Gakuen Uegahara, Sanda, Hyogo 669-1330, Japan.
| | - Daisuke Saito
- Graduate School of Chemical Sciences and Engineering, and Department of Chemistry, Faculty of Science, Hokkaido University, North-10 West-8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
- Department of Applied Chemistry for Environment, School of Biological and Environmental Sciences, Kwansei Gakuin University, 1 Gakuen Uegahara, Sanda, Hyogo 669-1330, Japan.
| | - Masaki Yoshida
- Department of Applied Chemistry for Environment, School of Biological and Environmental Sciences, Kwansei Gakuin University, 1 Gakuen Uegahara, Sanda, Hyogo 669-1330, Japan.
| | - Fuka Tanaka
- Department of Applied Chemistry for Environment, School of Biological and Environmental Sciences, Kwansei Gakuin University, 1 Gakuen Uegahara, Sanda, Hyogo 669-1330, Japan.
| | - Atsushi Kobayashi
- Graduate School of Chemical Sciences and Engineering, and Department of Chemistry, Faculty of Science, Hokkaido University, North-10 West-8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, and Department of Chemistry, Faculty of Science, Hokkaido University, North-10 West-8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
| | - Masako Kato
- Department of Applied Chemistry for Environment, School of Biological and Environmental Sciences, Kwansei Gakuin University, 1 Gakuen Uegahara, Sanda, Hyogo 669-1330, Japan.
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4
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Inaba H, Sakaguchi M, Watari S, Ogawa S, Kabir AMR, Kakugo A, Sada K, Matsuura K. Reversible Photocontrol of Microtubule Stability by Spiropyran-Conjugated Tau-Derived Peptides. Chembiochem 2023; 24:e202200782. [PMID: 36935355 DOI: 10.1002/cbic.202200782] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 03/16/2023] [Accepted: 03/19/2023] [Indexed: 03/21/2023]
Abstract
Spatiotemporal modulation of microtubules by light has become an important aspect of the biological and nanotechnological applications of microtubules. We previously developed a Tau-derived peptide as a binding unit to the inside of microtubules. Here, we conjugated the Tau-derived peptide to spiropyran, which is reversibly converted to merocyanine by light, as a reversible photocontrol system to stabilize microtubules. Among the synthesized peptides with spiropyran/merocyanine at different positions, several peptides were bound to the inside of microtubules and stabilized the structures of microtubules. The peptide with spiropyran at the N-terminus induced polymerization and stabilization of microtubules, whereas the same peptide with the merocyanine form did not exert these effects. Reversible formation and dissociation of microtubules were achieved using the peptide with spiropyran conjugated at the N-terminus and irradiation with UV and visible light. Spiropyran-conjugated Tau-derived peptides would be useful for spatiotemporal modulation of microtubule stability through reversible photocontrol of binding.
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Affiliation(s)
- Hiroshi Inaba
- Tottori University: Tottori Daigaku, Department of Chemistry and Biotechnology, Graduate School of Engineering, Koyama-Minami 4-101, 680-8552, Tottori, JAPAN
| | - Minamo Sakaguchi
- Tottori University: Tottori Daigaku, Department of Chemistry and Biotechnology, Graduate School of Engineering, Koyama-Minami 4-101, 680-8552, Tottori, JAPAN
| | - Soei Watari
- Tottori University: Tottori Daigaku, Department of Chemistry and Biotechnology, Graduate School of Engineering, Koyama-Minami 4-101, 680-8552, Tottori, JAPAN
| | - Shigesaburo Ogawa
- Tottori University: Tottori Daigaku, Department of Chemistry and Biotechnology, Graduate School of Engineering, Koyama-Minami 4-101, 680-8552, Tottori, JAPAN
| | - Arif Md Rashedul Kabir
- Hokkaido University: Hokkaido Daigaku, Faculty of Science, Kita 10 Nishi 8, Kita-ku, 060-0810, Sapporo, JAPAN
| | - Akira Kakugo
- Kyoto University: Kyoto Daigaku, Department of Physics, Graduate School of Science, Oiwake-cho, Kitashirakawa, Sakyo-ku, 606-8502, Kyoto, JAPAN
| | - Kazuki Sada
- Hokkaido University: Hokkaido Daigaku, Faculty of Science, Kita 10 Nishi 8, Kita-ku, 060-0810, Sapporo, JAPAN
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5
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Rashid MR, Ganser C, Akter M, Nasrin SR, Kabir AMR, Sada K, Uchihashi T, Kakugo A. 3D structure of ring-shaped microtubule swarms revealed by high-speed atomic force microscopy. CHEM LETT 2023. [DOI: 10.1246/cl.220491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Mst. Rubaya Rashid
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - Christian Ganser
- Department of Creative Research, Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences, Okazaki, Aichi 444-8787, Japan
| | - Mousumi Akter
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | | | | | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - Takayuki Uchihashi
- Department of Creative Research, Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences, Okazaki, Aichi 444-8787, Japan
- Department of Physics, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan
| | - Akira Kakugo
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
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6
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Inaba H, Sueki Y, Ichikawa M, Kabir AMR, Iwasaki T, Shigematsu H, Kakugo A, Sada K, Tsukazaki T, Matsuura K. Generation of stable microtubule superstructures by binding of peptide-fused tetrameric proteins to inside and outside. Sci Adv 2022; 8:eabq3817. [PMID: 36070375 PMCID: PMC9451167 DOI: 10.1126/sciadv.abq3817] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Accepted: 07/22/2022] [Indexed: 05/24/2023]
Abstract
Microtubules play important roles in biological functions by forming superstructures, such as doublets and branched structures, in vivo. Despite the importance, it is challenging to construct these superstructures in vitro. Here, we designed a tetrameric fluorescent protein Azami-Green (AG) fused with His-tag and Tau-derived peptide (TP), TP-AG, to generate the superstructures. Main binding sites of TP-AG can be controlled to the inside and outside of microtubules by changing the polymerization conditions. The binding of TP-AG to the inside promoted microtubule formation and generated rigid and stable microtubules. The binding of TP-AG to the outside induced various microtubule superstructures, including doublets, multiplets, branched structures, and extremely long microtubules by recruiting tubulins to microtubules. Motile microtubule aster structures were also constructed by TP-AG. The generation of various microtubule superstructures by a single type of exogenous protein is a new concept for understanding the functions of microtubules and constructing microtubule-based nanomaterials.
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Affiliation(s)
- Hiroshi Inaba
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Tottori 680-8552, Japan
- Centre for Research on Green Sustainable Chemistry, Tottori University, Tottori 680-8552, Japan
| | - Yurina Sueki
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Tottori 680-8552, Japan
| | - Muneyoshi Ichikawa
- Division of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan
- PRESTO, Japan Science and Technology Agency, Kawaguchi, Japan
| | | | - Takashi Iwasaki
- Department of Bioresources Science, Graduate School of Agricultural Sciences, Tottori University, Tottori 680-8553, Japan
| | | | - Akira Kakugo
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Kazuki Sada
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Tomoya Tsukazaki
- Division of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Tottori 680-8552, Japan
- Centre for Research on Green Sustainable Chemistry, Tottori University, Tottori 680-8552, Japan
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7
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Watari S, Inaba H, Tamura T, Kabir AMR, Kakugo A, Sada K, Hamachi I, Matsuura K. Light-induced stabilization of microtubules by photo-crosslinking of a Tau-derived peptide. Chem Commun (Camb) 2022; 58:9190-9193. [PMID: 35929838 DOI: 10.1039/d2cc01890j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
For light-induced stabilization of microtubules (MTs) to manipulate cells, a photo-reactive diazirine group was conjugated to a Tau-derived peptide, a motif binding on the inside of MTs. Ultraviolet (UV) light irradiation induced significant stabilization of MTs via the formation of a covalent bond of the peptide and showed toxicity.
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Affiliation(s)
- Soei Watari
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Tottori 680-8552, Japan.
| | - Hiroshi Inaba
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Tottori 680-8552, Japan. .,Centre for Research on Green Sustainable Chemistry, Tottori University, Tottori 680-8552, Japan
| | - Tomonori Tamura
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | | | - Akira Kakugo
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.,Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Kazuki Sada
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.,Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Itaru Hamachi
- Department of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Katsura, Nishikyo-ku, Kyoto 615-8510, Japan.,JST-ERATO, Hamachi Innovative Molecular Technology for Neuroscience, Nishikyo-ku, Kyoto 615-8530, Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Tottori 680-8552, Japan. .,Centre for Research on Green Sustainable Chemistry, Tottori University, Tottori 680-8552, Japan
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8
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Kabir AMR, Munmun T, Sada K, Kakugo A. Fluctuation in the Sliding Movement of Kinesin-Driven Microtubules Is Regulated Using the Deep-Sea Osmolyte Trimethylamine N-Oxide. ACS Omega 2022; 7:18597-18604. [PMID: 35694499 PMCID: PMC9178762 DOI: 10.1021/acsomega.2c01228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 05/05/2022] [Indexed: 06/15/2023]
Abstract
Nowadays, biomolecular motor-based miniaturized lab-on-a-chip devices have been attracting much attention for their wide range of nanotechnological applications. Most of the applications are dependent on the motor-driven active transportation of their associated filamentous proteins as shuttles. Fluctuation in the movement of the shuttles is a major contributor to the dispersion in motor-driven active transportation, which limits the efficiency of the miniaturized devices. In this work, by employing the biomolecular motor kinesin and its associated protein filament microtubule as a model active transport system, we demonstrate that the deep-sea osmolyte trimethylamine N-oxide (TMAO) is useful in regulating the fluctuation in the motility of microtubule shuttles. We show that the motional diffusion coefficient, a measure of the fluctuation in the movement of the kinesin-propelled microtubules, gradually decreases upon increasing the concentration of TMAO in the transportation system. We have been able to reduce the motional diffusion coefficient of microtubules more than 200 times by employing TMAO at a concentration of 2 M. We also show that upon elimination of TMAO, the motional diffusion coefficient of microtubules can be restored, which confirms that TMAO can be used as a tool to reversibly regulate the fluctuation in the sliding movement of kinesin-propelled microtubule shuttles. Such reversible regulation of the dynamic behavior of the shuttles does not require sacrificing the concentration of fuel used for transportation. Our results confirm the ability to manipulate the nanoscale motion of biomolecular motor-driven active transporters in an artificial environment. This work is expected to further enhance the tunability of biomolecular motor functions, which, in turn, will foster their nanotechnological applications based on active transportation.
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Affiliation(s)
| | - Tasrina Munmun
- Graduate
School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Kazuki Sada
- Faculty
of Science, Hokkaido University, Sapporo 060-0810, Japan
- Graduate
School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Akira Kakugo
- Faculty
of Science, Hokkaido University, Sapporo 060-0810, Japan
- Graduate
School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
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9
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Akter M, Keya JJ, Kayano K, Kabir AMR, Inoue D, Hess H, Sada K, Kuzuya A, Asanuma H, Kakugo A. Cooperative cargo transportation by a swarm of molecular machines. Sci Robot 2022; 7:eabm0677. [PMID: 35442703 DOI: 10.1126/scirobotics.abm0677] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Cooperation is a strategy that has been adopted by groups of organisms to execute complex tasks more efficiently than single entities. Cooperation increases the robustness and flexibility of the working groups and permits sharing of the workload among individuals. However, the utilization of this strategy in artificial systems at the molecular level, which could enable substantial advances in microrobotics and nanotechnology, remains highly challenging. Here, we demonstrate molecular transportation through the cooperative action of a large number of artificial molecular machines, photoresponsive DNA-conjugated microtubules driven by kinesin motor proteins. Mechanical communication via conjugated photoresponsive DNA enables these microtubules to organize into groups upon photoirradiation. The groups of transporters load and transport cargo, and cargo unloading is achieved by dissociating the groups into single microtubules. The group formation permits the loading and transport of cargoes with larger sizes and in larger numbers over long distances compared with single transporters. We also demonstrate that cargo can be collected at user-determined locations defined by ultraviolet light exposure. This work demonstrates cooperative task performance by molecular machines, which will help to construct molecular robots with advanced functionalities in the future.
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Affiliation(s)
- M Akter
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - J J Keya
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - K Kayano
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - A M R Kabir
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - D Inoue
- Faculty of Design, Kyushu University, Fukuoka 815-8540, Japan
| | - H Hess
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA
| | - K Sada
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.,Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - A Kuzuya
- Department of Chemistry and Materials Engineering, Kansai University, Osaka 564-8680, Japan
| | - H Asanuma
- Department of Biomolecular Engineering, Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan
| | - A Kakugo
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.,Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
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10
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Wang X, Sunaga S, Kokado K, Sada K. Swelling Behavior of Lipophilic Polyelectrolyte Gels in Organic Solvents‐Water or Sea Water Binary Mixtures. MACROMOL CHEM PHYS 2022. [DOI: 10.1002/macp.202100505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Xinmeng Wang
- X. Wang, S. Sunaga, K. Sada Graduate School of Chemical Sciences and Engineering Hokkaido University Kita10 Nishi8 Kita‐ku Sapporo Hokkaido 060–8628 Japan
| | - Sokuro Sunaga
- X. Wang, S. Sunaga, K. Sada Graduate School of Chemical Sciences and Engineering Hokkaido University Kita10 Nishi8 Kita‐ku Sapporo Hokkaido 060–8628 Japan
| | - Kenta Kokado
- K. Kokado Research Institute for Electronic Science Hokkaido University Kita20 Nishi10 Kita‐ku Sapporo Hokkaido 001–0020 Japan
- K. Kokado JST PRESTO 4‐1‐8 Honcho Kawaguchi Saitama 332‐0012 Japan
| | - Kazuki Sada
- X. Wang, S. Sunaga, K. Sada Graduate School of Chemical Sciences and Engineering Hokkaido University Kita10 Nishi8 Kita‐ku Sapporo Hokkaido 060–8628 Japan
- K. Sada Faculty of Science Hokkaido University Kita10 Nishi8 Kita‐ku Sapporo Hokkaido 060–0810 Japan
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11
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Kabir AMR, Munmun T, Hayashi T, Yasuda S, Kimura AP, Kinoshita M, Murata T, Sada K, Kakugo A. Controlling the Rigidity of Kinesin-Propelled Microtubules in an In Vitro Gliding Assay Using the Deep-Sea Osmolyte Trimethylamine N-Oxide. ACS Omega 2022; 7:3796-3803. [PMID: 35128287 PMCID: PMC8811939 DOI: 10.1021/acsomega.1c06699] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Accepted: 01/05/2022] [Indexed: 06/14/2023]
Abstract
The biomolecular motor protein kinesin and its associated filamentous protein microtubule have been finding important nanotechnological applications in the recent years. Rigidity of the microtubules, which are propelled by kinesin motors in an in vitro gliding assay, is an important metric that determines the success of utilization of microtubules and kinesins in various applications, such as transportation, sensing, sorting, molecular robotics, etc. Therefore, regulating the rigidity of kinesin-propelled microtubules has been critical. In this work, we report a simple strategy to regulate the rigidity of kinesin-propelled microtubules in an in vitro gliding assay. We demonstrate that rigidity of the microtubules, propelled by kinesins in an in vitro gliding assay, can be modulated simply by using the natural osmolyte trimethylamine N-oxide (TMAO). By varying the concentration of TMAO in the gliding assay, the rigidity of microtubules can be modulated over a wide range. Based on this strategy, we are able to reduce the persistence length of microtubules, a measure of microtubule rigidity, ∼8 fold by using TMAO at the concentration of 1.5 M. Furthermore, we found that the decreased rigidity of the kinesin-propelled microtubules can be restored upon elimination of TMAO from the in vitro gliding assay. Alteration in the rigidity of microtubules is accounted for by the non-uniformity of the force applied by kinesins along the microtubules in the presence of TMAO. This work offers a facile strategy to reversibly regulate the rigidity of kinesin-propelled microtubules in situ, which would widen the applications of the biomolecular motor kinesin and its associated protein microtubule in various fields.
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Affiliation(s)
| | - Tasrina Munmun
- Graduate
School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Tomohiko Hayashi
- Institute
of Advanced Energy, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Satoshi Yasuda
- Graduate
School of Science, Chiba University, 1-33 Yayoi-cho, Inage, Chiba 263-8522, Japan
- Membrane
Protein Research and Molecular Chirality Research Centers, Chiba University, 1-33 Yayoi-cho, Inage, Chiba 263-8522, Japan
| | - Atsushi P. Kimura
- Faculty
of Science, Hokkaido University, Sapporo 060-0810, Japan
- Graduate
School of Life Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Masahiro Kinoshita
- Institute
of Advanced Energy, Kyoto University, Uji, Kyoto 611-0011, Japan
- Graduate
School of Science, Chiba University, 1-33 Yayoi-cho, Inage, Chiba 263-8522, Japan
- Membrane
Protein Research and Molecular Chirality Research Centers, Chiba University, 1-33 Yayoi-cho, Inage, Chiba 263-8522, Japan
| | - Takeshi Murata
- Graduate
School of Science, Chiba University, 1-33 Yayoi-cho, Inage, Chiba 263-8522, Japan
- Membrane
Protein Research and Molecular Chirality Research Centers, Chiba University, 1-33 Yayoi-cho, Inage, Chiba 263-8522, Japan
| | - Kazuki Sada
- Faculty
of Science, Hokkaido University, Sapporo 060-0810, Japan
- Graduate
School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
| | - Akira Kakugo
- Faculty
of Science, Hokkaido University, Sapporo 060-0810, Japan
- Graduate
School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan
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12
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Inaba H, Kabir AMR, Kakugo A, Sada K, Matsuura K. Structural Changes of Microtubules by Encapsulation of Gold Nanoparticles Using a Tau-Derived Peptide. CHEM LETT 2022. [DOI: 10.1246/cl.210761] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Hiroshi Inaba
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552 Japan
- Centre for Research on Green Sustainable Chemistry, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552 Japan
| | | | - Akira Kakugo
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810 Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810 Japan
| | - Kazuki Sada
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810 Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810 Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552 Japan
- Centre for Research on Green Sustainable Chemistry, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552 Japan
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13
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Ishii S, Murayama K, Sada K, Asanuma H, Kakugo A. Unexpected Dissociation of Photoresponsive UV-ON DNA Carrying p-tert-Butyl Azobenzene under UV Light Irradiation. CHEM LETT 2022. [DOI: 10.1246/cl.210788] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Satsuki Ishii
- Graduate School of Chemical Sciences & Engineering, Hokkaido University, Kita 10 Nishi 8, Sapporo, 060-0810, Japan
| | - Keiji Murayama
- Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Aichi, 464-8603, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences & Engineering, Hokkaido University, Kita 10 Nishi 8, Sapporo, 060-0810, Japan
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Sapporo, 060-0810, Japan
| | - Hiroyuki Asanuma
- Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Aichi, 464-8603, Japan
| | - Akira Kakugo
- Graduate School of Chemical Sciences & Engineering, Hokkaido University, Kita 10 Nishi 8, Sapporo, 060-0810, Japan
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Sapporo, 060-0810, Japan
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14
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Kawai K, Ikeda K, Sato A, Kabasawa A, Kojima M, Kokado K, Kakugo A, Sada K, Yoshino T, Matsunaga S. 1,2-Disubstituted 1,2-Dihydro-1,2,4,5-tetrazine-3,6-dione as a Dynamic Covalent Bonding Unit at Room Temperature. J Am Chem Soc 2022; 144:1370-1379. [PMID: 35040645 DOI: 10.1021/jacs.1c11665] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Dynamic covalent bonds are useful tools in a wide range of applications. Although various reversible chemical reactions have been studied for this purpose, the requirement for harsh conditions, such as high temperature and low or high pH, to activate generally stable covalent bonds limits their potential applications involving biomolecules or household utilization. Here, we report the design, synthesis, characterization, and dynamic covalent bonding properties of 1,2-disubstituted 1,2-dihydro-1,2,4,5-tetrazine-3,6-dione (TETRAD). Hetero-Diels-Alder reactions of TETRAD with furan derivatives and their retro-reactions proceeded rapidly at room temperature under neutral conditions, enabling a chemically induced sol-gel transition system.
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Affiliation(s)
- Kentaro Kawai
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12 Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Kazuki Ikeda
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12 Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Akane Sato
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12 Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Akira Kabasawa
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita-10 Nishi-8, Kita-ku, Sapporo 060-0810, Japan
| | - Masahiro Kojima
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12 Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Kenta Kokado
- Research Institute for Electronic Science, Hokkaido University, Sapporo 001-0020, Japan
| | - Akira Kakugo
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita-10 Nishi-8, Kita-ku, Sapporo 060-0810, Japan
| | - Kazuki Sada
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita-10 Nishi-8, Kita-ku, Sapporo 060-0810, Japan
| | - Tatsuhiko Yoshino
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12 Nishi-6, Kita-ku, Sapporo 060-0812, Japan.,Global Station for Biosurfaces and Drug Discovery, Hokkaido University, Kita-12 Nishi-6, Kita-ku, Sapporo 060-0812, Japan
| | - Shigeki Matsunaga
- Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-12 Nishi-6, Kita-ku, Sapporo 060-0812, Japan.,Global Station for Biosurfaces and Drug Discovery, Hokkaido University, Kita-12 Nishi-6, Kita-ku, Sapporo 060-0812, Japan
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15
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Nasrin SR, Ganser C, Nishikawa S, Kabir AMR, Sada K, Yamashita T, Ikeguchi M, Uchihashi T, Hess H, Kakugo A. Deformation of microtubules regulates translocation dynamics of kinesin. Sci Adv 2021; 7:eabf2211. [PMID: 34644102 PMCID: PMC10763888 DOI: 10.1126/sciadv.abf2211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Accepted: 08/20/2021] [Indexed: 06/13/2023]
Abstract
Microtubules, the most rigid components of the cytoskeleton, can be key transduction elements between external forces and the cellular environment. Mechanical forces induce microtubule deformation, which is presumed to be critical for the mechanoregulation of cellular events. However, concrete evidence is lacking. In this work, with high-speed atomic force microscopy, we unravel how microtubule deformation regulates the translocation of the microtubule-associated motor protein kinesin-1, responsible for intracellular transport. Our results show that the microtubule deformation by bending impedes the translocation dynamics of kinesins along them. Molecular dynamics simulation shows that the hindered translocation of kinesins can be attributed to an enhanced affinity of kinesins to the microtubule structural units in microtubules deformed by bending. This study advances our understanding of the role of cytoskeletal components in mechanotransduction.
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Affiliation(s)
| | - Christian Ganser
- Department of Creative Research, Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences, Okazaki, Aichi 444-8787, Japan
| | - Seiji Nishikawa
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | | | - Kazuki Sada
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
| | - Takefumi Yamashita
- Laboratory for Systems Biology and Medicine, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo 153-8904, Japan
| | - Mitsunori Ikeguchi
- Graduate School of Medical Life Science, Yokohama City University, Tsurumi-ku, Yokohama 230-0045, Japan
| | - Takayuki Uchihashi
- Department of Creative Research, Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences, Okazaki, Aichi 444-8787, Japan
- Department of Physics, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan
| | - Henry Hess
- Department of Biomedical Engineering, Columbia University, New York, NY 10027, USA
| | - Akira Kakugo
- Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan
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16
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Afroze F, Inoue D, Farhana TI, Hiraiwa T, Akiyama R, Kabir AMR, Sada K, Kakugo A. Monopolar flocking of microtubules in collective motion. Biochem Biophys Res Commun 2021; 563:73-78. [PMID: 34062389 DOI: 10.1016/j.bbrc.2021.05.037] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 05/12/2021] [Indexed: 11/16/2022]
Abstract
Flocking is a fascinating coordinated behavior of living organisms or self-propelled particles (SPPs). Particularly, monopolar flocking has been attractive due to its potential applications in various fields. However, the underlying mechanism behind flocking and emergence of monopolar motion in flocking of SPPs has remained obscured. Here, we demonstrate monopolar flocking of kinesin-driven microtubules, a self-propelled biomolecular motor system. Microtubules with an intrinsic structural chirality preferentially move towards counter-clockwise direction. At high density, the CCW motion of microtubules facilitates monopolar flocking and formation of a spiral pattern. The monopolar flocking of microtubules is accounted for by a torque generated when the motion of microtubules was obstructed due to collisions. Our results shed light on flocking and emergence of monopolar motion in flocking of chiral active matters. This work will help regulate the polarity in collective motion of SPPs which in turn will widen their applications in nanotechnology, materials science and engineering.
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Affiliation(s)
- Farhana Afroze
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Hokkaido, Japan
| | - Daisuke Inoue
- Faculty of Design, Kyushu University, Fukuoka, 815-8540, Japan
| | - Tamanna Ishrat Farhana
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Hokkaido, Japan
| | - Tetsuya Hiraiwa
- Mechanobiology Institute, National University of Singapore, Singapore, 117411, Singapore; Universal Biology Institute, The University of Tokyo, Hongo, Tokyo, 113-0033, Japan
| | - Ryo Akiyama
- Department of Chemistry, Kyushu University, Fukuoka, 819-0395, Japan
| | | | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Hokkaido, Japan; Faculty of Science, Hokkaido University, Sapporo, 060-0810, Hokkaido, Japan
| | - Akira Kakugo
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Hokkaido, Japan; Faculty of Science, Hokkaido University, Sapporo, 060-0810, Hokkaido, Japan.
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17
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18
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Kabir AMR, Sada K, Kakugo A. Controlling the length of self-assembled microtubes through mechanical stress-induced scission. Chem Commun (Camb) 2021; 57:468-471. [PMID: 33367340 DOI: 10.1039/d0cc07327j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We demonstrate that mechanical stress-induced scission is an effective strategy to control the length of self-assembled microtubes. By applying mechanical stress with variable magnitude and mode, the length of microtubes can be tightly regulated. We have succeeded in reducing the average length of microtubes ∼twenty-fold through stretching and compression. The mechanical stress-induced scission of self-assembled, long microtubes into smaller fragments has no adverse effect on the functionality of the microtubes. This work will foster the applications of length-controlled, self-assembled microtubes in various fields.
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19
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Akter M, Keya JJ, Kabir AMR, Asanuma H, Murayama K, Sada K, Kakugo A. Photo-regulated trajectories of gliding microtubules conjugated with DNA. Chem Commun (Camb) 2020; 56:7953-7956. [PMID: 32537622 DOI: 10.1039/d0cc03124k] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We regulate the persistency in motion of kinesin-driven microtubules (MTs) simply using a photoresponsive DNA (pDNA) and ultraviolet (UV)-visible light. The path persistence length of MTs, which is a measure of the persistency in their motion, increases and decreases upon illuminating the MTs with UV and visible light respectively. Moreover, pDNA is found to work as a shield for MTs against damage under UV irradiation.
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Affiliation(s)
- Mousumi Akter
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan.
| | | | | | - Hiroyuki Asanuma
- Graduate School of Engineering, Nagoya University, Osaka, 564-8680, Japan
| | - Keiji Murayama
- Graduate School of Engineering, Nagoya University, Osaka, 564-8680, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan. and Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Akira Kakugo
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan. and Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
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20
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Inaba H, Yamada M, Rashid MR, Kabir AMR, Kakugo A, Sada K, Matsuura K. Magnetic Force-Induced Alignment of Microtubules by Encapsulation of CoPt Nanoparticles Using a Tau-Derived Peptide. Nano Lett 2020; 20:5251-5258. [PMID: 32525681 DOI: 10.1021/acs.nanolett.0c01573] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Construction of magnetotactic materials is a significant challenge in nanotechnology applications such as nanodevices and nanotransportation. Artificial magnetotactic materials can be designed from magnetotactic bacteria because these bacteria use magnetic nanoparticles for aligning with and moving within magnetic fields. Microtubules are attractive scaffolds to construct magnetotactic materials because of their intrinsic motility. Nonetheless, it is challenging to magnetically control their orientation while retaining their motility by conjugating magnetic nanoparticles on their outer surface. Here we solve the issue by encapsulating magnetic cobalt-platinum nanoparticles inside microtubules using our developed Tau-derived peptide that binds to their internal pockets. The in situ growth of cobalt-platinum nanoparticles resulted in the formation of a linear-chain assembly of nanoparticles inside the microtubules. The magnetic microtubules significantly aligned with a high order parameter (0.71) along the weak magnetic field (0.37 T) and showed increased motility. This work provides a new concept for designing magnetotactic materials.
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Affiliation(s)
- Hiroshi Inaba
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan
- Centre for Research on Green Sustainable Chemistry, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan
| | - Mayuki Yamada
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan
| | - Mst Rubaya Rashid
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Arif Md Rashedul Kabir
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Akira Kakugo
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan
- Centre for Research on Green Sustainable Chemistry, Tottori University, Koyama-Minami 4-101, Tottori 680-8552, Japan
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21
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Machida T, Iwasa T, Taketsugu T, Sada K, Kokado K. Front Cover: Photoinduced Pyramidal Inversion Behavior of Phosphanes Involved with Aggregation‐Induced Emission Behavior (Chem. Eur. J. 36/2020). Chemistry 2020. [DOI: 10.1002/chem.202002357] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Takashi Machida
- Graduate School of Chemical Sciences and EngineeringHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
| | - Takeshi Iwasa
- Graduate School of Chemical Sciences and EngineeringHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Department of ChemistryFaculty of ScienceHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD)Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
| | - Tetsuya Taketsugu
- Graduate School of Chemical Sciences and EngineeringHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Department of ChemistryFaculty of ScienceHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD)Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and EngineeringHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Department of ChemistryFaculty of ScienceHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
| | - Kenta Kokado
- Graduate School of Chemical Sciences and EngineeringHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Department of ChemistryFaculty of ScienceHokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- JST-PRESTO 4-1-8 Honcho, Kawaguchi Saitama 332-0012 Japan
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22
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Machida T, Iwasa T, Taketsugu T, Sada K, Kokado K. Photoinduced Pyramidal Inversion Behavior of Phosphanes Involved with Aggregation‐Induced Emission Behavior. Chemistry 2020; 26:8028-8034. [DOI: 10.1002/chem.202000264] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Revised: 02/27/2020] [Indexed: 12/22/2022]
Affiliation(s)
- Takashi Machida
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
| | - Takeshi Iwasa
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Department of Chemistry Faculty of Science Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD) Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
| | - Tetsuya Taketsugu
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Department of Chemistry Faculty of Science Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD) Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Department of Chemistry Faculty of Science Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
| | - Kenta Kokado
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- Department of Chemistry Faculty of Science Hokkaido University Kita 10 Nishi 8, Kita-ku Sapporo 060-0810 Japan
- JST-PRESTO 4-1-8 Honcho, Kawaguchi Saitama 332-0012 Japan
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23
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Machida T, Iwasa T, Taketsugu T, Sada K, Kokado K. Photoinduced Pyramidal Inversion Behavior of Phosphanes Involved with Aggregation-Induced Emission Behavior. Chemistry 2020; 26:7965. [PMID: 32500651 DOI: 10.1002/chem.202002358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Invited for the cover of this issue is Kenta Kokado and co-workers at Hokkaido University. The cover picture describes the interesting pyramidal inversion behavior of phosphanes in the excited state, like entering "the Mirror World", which we found in this research. Read the full text of the article at 10.1002/chem.202000264.
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Affiliation(s)
- Takashi Machida
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan
| | - Takeshi Iwasa
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.,Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.,Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan
| | - Tetsuya Taketsugu
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.,Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.,Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.,Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan
| | - Kenta Kokado
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.,Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, 060-0810, Japan.,JST-PRESTO
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24
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25
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Kabir AMR, Sada K, Kakugo A. Breaking of buckled microtubules is mediated by kinesins. Biochem Biophys Res Commun 2020; 524:249-254. [PMID: 31983434 DOI: 10.1016/j.bbrc.2020.01.082] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2020] [Accepted: 01/14/2020] [Indexed: 11/28/2022]
Abstract
Microtubule is the most rigid component of eukaryotic cytoskeleton that plays pivotal roles in many important cellular events. Microtubules are known to undergo bending or buckling in cells which often results in breaking of this cytoskeletal protein filament. Various cellular events such as cell migration, chromosome segregation, etc. are dependent on the buckling induced breaking of microtubules. However, the reason behind the breaking of buckled microtubules in cell has remained obscure yet. In this work, we have demonstrated breaking of microtubules on a 2D elastic medium by applying compressive stress. The applied compressive stress caused buckling of the microtubules which ultimately resulted in their breaking. We show that breaking of the buckled microtubules cannot be accounted for by considering the changes in curvature of the microtubules due to mechanical deformation. Our results confirm that, it is the interaction of kinesin, a microtubule-associated motor protein, with microtubules which plays the key role in breaking of the buckled microtubules on the 2D elastic medium. The breaking of buckled microtubules is ascribed to decrease in rigidity of microtubules upon interaction with kinesins. This work for the first time confirms the involvement of a microtubule-associated motor protein in breaking of microtubules under compressive stress, which will help further clarify the mechanism of breaking of buckled microtubules in cells and its significance in the cellular events.
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Affiliation(s)
| | - Kazuki Sada
- Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan; Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan
| | - Akira Kakugo
- Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan; Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan.
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Nasrin SR, Afrin T, Kabir AMR, Inoue D, Torisawa T, Oiwa K, Sada K, Kakugo A. Regulation of Biomolecular-Motor-Driven Cargo Transport by Microtubules under Mechanical Stress. ACS Appl Bio Mater 2020; 3:1875-1883. [DOI: 10.1021/acsabm.9b01010] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Syeda Rubaiya Nasrin
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Hokkaido, Japan
| | - Tanjina Afrin
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Hokkaido, Japan
| | | | - Daisuke Inoue
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Hokkaido, Japan
| | - Takayuki Torisawa
- Cell Architecture Laboratory, Structural Biology Center, National Institute of Genetics, Mishima 411-8540, Japan
- Department of Genetics, SOKENDAI (The Graduate University for Advanced Studies), Mishima 411-8540, Japan
| | - Kazuhiro Oiwa
- Advanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe 651-2492, Hyogo, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Hokkaido, Japan
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Hokkaido, Japan
| | - Akira Kakugo
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Hokkaido, Japan
- Faculty of Science, Hokkaido University, Sapporo 060-0810, Hokkaido, Japan
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27
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Naya M, Kokado K, Landenberger KB, Kanaoka S, Aoshima S, Sada K. Supramolecularly Designed Thermoresponsive Polymers in Different Polymer Backbones. MACROMOL CHEM PHYS 2020. [DOI: 10.1002/macp.202070013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Naya M, Kokado K, Landenberger KB, Kanaoka S, Aoshima S, Sada K. Supramolecularly Designed Thermoresponsive Polymers in Different Polymer Backbones. MACROMOL CHEM PHYS 2020. [DOI: 10.1002/macp.201900455] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Masami Naya
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10 Nishi 8, Kita‐ku Sapporo Hokkaido 060–0810 Japan
| | - Kenta Kokado
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10 Nishi 8, Kita‐ku Sapporo Hokkaido 060–0810 Japan
- Department of Chemistry Faculty of Science Hokkaido University Kita 10 Nishi 8, Kita‐ku Sapporo Hokkaido 060–0810 Japan
| | - Kira Beth Landenberger
- Department of Macromolecular Science Graduate School of Science Osaka University Toyonaka Osaka 560‐0043 Japan
| | - Shokyoku Kanaoka
- Department of Macromolecular Science Graduate School of Science Osaka University Toyonaka Osaka 560‐0043 Japan
| | - Sadahito Aoshima
- Department of Macromolecular Science Graduate School of Science Osaka University Toyonaka Osaka 560‐0043 Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10 Nishi 8, Kita‐ku Sapporo Hokkaido 060–0810 Japan
- Department of Chemistry Faculty of Science Hokkaido University Kita 10 Nishi 8, Kita‐ku Sapporo Hokkaido 060–0810 Japan
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30
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Munmun T, Kabir AMR, Katsumoto Y, Sada K, Kakugo A. Controlling the kinetics of interaction between microtubules and kinesins over a wide temperature range using the deep-sea osmolyte trimethylamine N-oxide. Chem Commun (Camb) 2020; 56:1187-1190. [PMID: 31922177 DOI: 10.1039/c9cc09324a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Trimethylamine N-oxide is found to be effective in regulating the interaction between microtubules and kinesins over a wide temperature range. The lifetime of the motility of microtubules on kinesins at high temperatures is prolonged using trimethylamine N-oxide. The activation energy of microtubule motility is increased by trimethylamine N-oxide. Prolonged operation at high temperatures decreased the activation energy of MT motility despite the increase in concentration of trimethylamine N-oxide.
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Affiliation(s)
- Tasrina Munmun
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan.
| | | | - Yukiteru Katsumoto
- Department of Chemistry, Faculty of Science, Fukuoka University, Nanakuma 8-19-1, Jonan-ku, Fukuoka 814-0180, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan. and Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Akira Kakugo
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-0810, Japan. and Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
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31
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Tanaka Y, Machida T, Noumi T, Sada K, Kokado K. Emissive tetraphenylethylene (TPE) derivatives in a dissolved state tightly fastened by a short oligo(ethylene glycol) chain. Org Chem Front 2020. [DOI: 10.1039/d0qo00839g] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The requirements for strong emission from a typical AIEgen in solution were quantitatively examined both by photochemical experiments and theoretical computations.
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Affiliation(s)
- Yuma Tanaka
- Graduate School of Chemical Sciences and Engineering
- Hokkaido University
- Sapporo
- Japan
| | - Takashi Machida
- Graduate School of Chemical Sciences and Engineering
- Hokkaido University
- Sapporo
- Japan
| | - Toshiaki Noumi
- Department of Chemistry
- School of Science
- Hokkaido University
- Sapporo
- Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering
- Hokkaido University
- Sapporo
- Japan
- Department of Chemistry
| | - Kenta Kokado
- Research Institute for Electronic Science
- Hokkaido University
- Sapporo
- Japan
- JST-PRESTO
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32
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Nagata S, Kokado K, Sada K. Metal–organic framework tethering pH- and thermo-responsive polymer for ON–OFF controlled release of guest molecules. CrystEngComm 2020. [DOI: 10.1039/c9ce01731c] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Metal–organic framework tethering pH- and thermo-responsive polymer underwent ON–OFF controlled release of the included guest molecules.
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Affiliation(s)
- Shunjiro Nagata
- Graduate School of Chemical Sciences and Engineering
- Hokkaido University
- Sapporo
- Japan
| | - Kenta Kokado
- Graduate School of Chemical Sciences and Engineering
- Hokkaido University
- Sapporo
- Japan
- Faculty of Science
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering
- Hokkaido University
- Sapporo
- Japan
- Faculty of Science
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33
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Inoue D, Gutmann G, Nitta T, Kabir AMR, Konagaya A, Tokuraku K, Sada K, Hess H, Kakugo A. Adaptation of Patterns of Motile Filaments under Dynamic Boundary Conditions. ACS Nano 2019; 13:12452-12460. [PMID: 31585030 DOI: 10.1021/acsnano.9b01450] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Boundary conditions are important for pattern formation in active matter. However, it is still not well-understood how alterations in the boundary conditions (dynamic boundary conditions) impact pattern formation. To elucidate the effect of dynamic boundary conditions on the pattern formation by active matter, we investigate an in vitro gliding assay of microtubules on a deformable soft substrate. The dynamic boundary conditions were realized by applying mechanical stress through stretching and compression of the substrate during the gliding assay. A single cycle of stretch-and-compression (relaxation) of the substrate induces perpendicular alignment of microtubules relative to the stretch axis, whereas repeated cycles resulted in zigzag patterns of microtubules. Our model shows that the orientation angles of microtubules correspond to the direction to attain smooth movement without buckling, which is further amplified by the collective migration of the microtubules. Our results provide an insight into understanding the rich dynamics in self-organization arising in active matter subjected to time-dependent boundary conditions.
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Affiliation(s)
- Daisuke Inoue
- Faculty of Science , Hokkaido University , Sapporo 060-0810 , Japan
| | - Greg Gutmann
- Department of Computer Science , Tokyo Institute of Technology , Yokohama 226-8502 , Japan
| | - Takahiro Nitta
- Applied Physics Course, Faculty of Engineering , Gifu University , Gifu 501-1193 , Japan
| | | | - Akihiko Konagaya
- Department of Computer Science , Tokyo Institute of Technology , Yokohama 226-8502 , Japan
| | - Kiyotaka Tokuraku
- Department of Applied Sciences , Muroran Institute of Technology , Muroran 050-8585 , Japan
| | - Kazuki Sada
- Faculty of Science , Hokkaido University , Sapporo 060-0810 , Japan
- Graduate School of Chemical Sciences and Engineering , Hokkaido University , Sapporo 060-0810 , Japan
| | - Henry Hess
- Department of Biomedical Engineering , Columbia University , New York , New York 10027 , United States
| | - Akira Kakugo
- Faculty of Science , Hokkaido University , Sapporo 060-0810 , Japan
- Graduate School of Chemical Sciences and Engineering , Hokkaido University , Sapporo 060-0810 , Japan
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34
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Nasrin SR, Rashedul Kabir AM, Konagaya A, Ishihara T, Sada K, Kakugo A. Stabilization of microtubules by cevipabulin. Biochem Biophys Res Commun 2019; 516:760-764. [DOI: 10.1016/j.bbrc.2019.06.095] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Accepted: 06/17/2019] [Indexed: 12/20/2022]
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35
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Inaba H, Yamamoto T, Iwasaki T, Kabir AMR, Kakugo A, Sada K, Matsuura K. Fluorescent Tau-derived Peptide for Monitoring Microtubules in Living Cells. ACS Omega 2019; 4:11245-11250. [PMID: 31460226 PMCID: PMC6648849 DOI: 10.1021/acsomega.9b01089] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 06/18/2019] [Indexed: 06/04/2023]
Abstract
Microtubules (MTs) are key cytoskeletal components that modulate various cellular activities with their dynamic structural changes, including polymerization and depolymerization. To monitor the dynamics of MTs in living cells, many drug-based fluorescent probes have been developed; however, these also potentially disturb the polymerization/depolymerization of MTs. Here, we report nondrug, peptide-based fluorescent probes to monitor MTs in living cells. We employed a Tau-derived peptide (TP) that has been shown to bind MTs without inhibiting polymerization/depolymerization in vitro. We show that a tetramethylrhodamine (TMR)-labeled TP (TP-TMR) is internalized into HepG2 cells and binds to intracellular MTs, enabling visualization of MTs as clear, fibrous structures. The binding of TP-TMR shows no apparent effects on polymerization/depolymerization of MTs induced by MT-targeted drugs and temperature change. The main uptake mechanism of TP-TMR was elucidated as endocytosis, and partial endosomal escape resulted in the binding of TP-TMR to MTs. TP-TMR exhibited no cytotoxicity compared with MT-targeted drug scaffolds. These results indicate that TP scaffolds can be exploited as useful MT-targeted tools in living cells, such as in long-term imaging of MTs.
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Affiliation(s)
- Hiroshi Inaba
- Department
of Chemistry and Biotechnology, Graduate School of Engineering and Centre for Research
on Green Sustainable Chemistry, Tottori
University, Koyama-Minami 4-101, Tottori 680-8552, Japan
| | - Takahisa Yamamoto
- Department
of Chemistry and Biotechnology, Graduate School of Engineering and Centre for Research
on Green Sustainable Chemistry, Tottori
University, Koyama-Minami 4-101, Tottori 680-8552, Japan
| | - Takashi Iwasaki
- Department
of Bioresources Science, Graduate School of Agricultural Sciences, Tottori University, Koyama-Minami 4-101, Tottori 680-8553, Japan
| | - Arif Md. Rashedul Kabir
- Faculty of Science and Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Akira Kakugo
- Faculty of Science and Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Kazuki Sada
- Faculty of Science and Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo 060-0810, Japan
| | - Kazunori Matsuura
- Department
of Chemistry and Biotechnology, Graduate School of Engineering and Centre for Research
on Green Sustainable Chemistry, Tottori
University, Koyama-Minami 4-101, Tottori 680-8552, Japan
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36
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Matsuda K, Kabir AMR, Akamatsu N, Saito A, Ishikawa S, Matsuyama T, Ditzer O, Islam MS, Ohya Y, Sada K, Konagaya A, Kuzuya A, Kakugo A. Artificial Smooth Muscle Model Composed of Hierarchically Ordered Microtubule Asters Mediated by DNA Origami Nanostructures. Nano Lett 2019; 19:3933-3938. [PMID: 31037942 DOI: 10.1021/acs.nanolett.9b01201] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
DNA has been well-known for its applications in programmable self-assembly of materials. Nonetheless, utility of DNA origami, which offers more opportunity to realize complicated operations, has been very limited. Here we report self-assembly of a biomolecular motor system, microtubule-kinesin mediated by DNA origami nanostructures. We demonstrate that a rodlike DNA origami motif facilitates self-assembly of microtubules into asters. A smooth-muscle like molecular contraction system has also been realized using the DNA origami in which self-assembled microtubules exhibited fast and dynamic contraction in the presence of kinesins through an energy dissipative process. This work provides potential nanotechnological applications of DNA and biomolecular motor proteins.
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Affiliation(s)
| | | | - Naohide Akamatsu
- Department of Chemistry and Materials Engineering , Kansai University , Osaka 564-8680 , Japan
| | | | - Shumpei Ishikawa
- Department of Chemistry and Materials Engineering , Kansai University , Osaka 564-8680 , Japan
| | - Tsuyoshi Matsuyama
- Department of Chemistry and Materials Engineering , Kansai University , Osaka 564-8680 , Japan
| | - Oliver Ditzer
- Faculty of Chemistry and Food Chemistry , Technische Universität Dresden , Prüfungsamt, 01062 Dresden , Germany
| | - Md Sirajul Islam
- Organization for Research and Development of Innovative Science and Technology , Kansai University , Osaka 564-8680 , Japan
| | - Yuichi Ohya
- Department of Chemistry and Materials Engineering , Kansai University , Osaka 564-8680 , Japan
- Organization for Research and Development of Innovative Science and Technology , Kansai University , Osaka 564-8680 , Japan
| | | | - Akihiko Konagaya
- Department of Computational Intelligence and Systems Science , Tokyo Institute of Technology , Kanagawa 226-8502 , Japan
| | - Akinori Kuzuya
- Department of Chemistry and Materials Engineering , Kansai University , Osaka 564-8680 , Japan
- Organization for Research and Development of Innovative Science and Technology , Kansai University , Osaka 564-8680 , Japan
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Anan S, Mochizuki Y, Kokado K, Sada K. Step‐Growth Copolymerization Between an Immobilized Monomer and a Mobile Monomer in Metal–Organic Frameworks. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201901308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Shizuka Anan
- Department of Chemistry Faculty of Science Hokkaido University Kita 10, Nishi 8, Kita-Ku Sapporo Hokkaido 060-0810 Japan
| | - Yumi Mochizuki
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10, Nishi 8, Kita-Ku Sapporo Hokkaido 060-0810 Japan
| | - Kenta Kokado
- Department of Chemistry Faculty of Science Hokkaido University Kita 10, Nishi 8, Kita-Ku Sapporo Hokkaido 060-0810 Japan
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10, Nishi 8, Kita-Ku Sapporo Hokkaido 060-0810 Japan
| | - Kazuki Sada
- Department of Chemistry Faculty of Science Hokkaido University Kita 10, Nishi 8, Kita-Ku Sapporo Hokkaido 060-0810 Japan
- Graduate School of Chemical Sciences and Engineering Hokkaido University Kita 10, Nishi 8, Kita-Ku Sapporo Hokkaido 060-0810 Japan
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38
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Anan S, Mochizuki Y, Kokado K, Sada K. Step-Growth Copolymerization Between an Immobilized Monomer and a Mobile Monomer in Metal-Organic Frameworks. Angew Chem Int Ed Engl 2019; 58:8018-8023. [PMID: 30963673 DOI: 10.1002/anie.201901308] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Revised: 04/01/2019] [Indexed: 11/12/2022]
Abstract
The A-A/B-B step-growth copolymerization between a monomer immobilized in the crystalline state and a monomer mobile in the solution state is demonstrated. One of the two monomers was immobilized as organic ligands of the metal-organic framework (MOF) and polymerized with the mobile guest monomer, resulting in the formation of linear polymers. The polymerization behavior was completely different from that of the solution polymerizations. In particular, the degrees of polymerization (DP) converged to a specific value depending on the MOF structures. The inevitable termination is caused not by imperfectness of the polymerization reaction, but by the selection of the two polymerization partners among the several adjacent immobilized monomers. This is fully supported by the Monte Carlo simulation on the basis of the polymerization mechanism. Precise immobilization of monomers in the supramolecular assemblies is a promising way for the controlled A-A/B-B step-growth polymerization.
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Affiliation(s)
- Shizuka Anan
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-Ku, Sapporo, Hokkaido, 060-0810, Japan
| | - Yumi Mochizuki
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10, Nishi 8, Kita-Ku, Sapporo, Hokkaido, 060-0810, Japan
| | - Kenta Kokado
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-Ku, Sapporo, Hokkaido, 060-0810, Japan.,Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10, Nishi 8, Kita-Ku, Sapporo, Hokkaido, 060-0810, Japan
| | - Kazuki Sada
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-Ku, Sapporo, Hokkaido, 060-0810, Japan.,Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10, Nishi 8, Kita-Ku, Sapporo, Hokkaido, 060-0810, Japan
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39
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Kokado K, Sada K. Consideration of Molecular Structure in the Excited State to Design New Luminogens with Aggregation-Induced Emission. Angew Chem Int Ed Engl 2019; 58:8632-8639. [PMID: 30811777 DOI: 10.1002/anie.201814462] [Citation(s) in RCA: 88] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Indexed: 12/31/2022]
Abstract
Aggregation-induced emission (AIE) is a photoluminescence phenomenon in which an AIE luminogen (AIEgen) exhibits intense emission in the aggregated or solid state but only weak or no emission in the solution state. Understanding the mechanism of AIE requires consideration of excited state molecular geometry (for example, a π twist). This Minireview examines the history of AIEgens with a focus on the representative AIEgen, tetraphenylethylene (TPE). The mechanisms of solution-state quenching are reviewed and the crucial role of excited-state molecular transformations for AIE is discussed. Finally, recent progress in understanding the relationship between excited state molecular transformations and AIE is overviewed for a range of different AIEgens.
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Affiliation(s)
- Kenta Kokado
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita10 Nishi 8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan
| | - Kazuki Sada
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita10 Nishi 8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan
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40
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Kokado K, Sada K. Consideration of Molecular Structure in the Excited State to Design New Luminogens with Aggregation‐Induced Emission. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201814462] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Kenta Kokado
- Department of ChemistryFaculty of ScienceHokkaido University Kita10 Nishi 8, Kita-ku Sapporo Hokkaido 060-0810 Japan
| | - Kazuki Sada
- Department of ChemistryFaculty of ScienceHokkaido University Kita10 Nishi 8, Kita-ku Sapporo Hokkaido 060-0810 Japan
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41
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Islam MJ, Matsuo K, Menezes HM, Takahashi M, Nakagawa H, Kakugo A, Sada K, Tamaoki N. Substrate selectivity and its mechanistic insight of the photo-responsive non-nucleoside triphosphate for myosin and kinesin. Org Biomol Chem 2019; 17:53-65. [PMID: 30534753 DOI: 10.1039/c8ob02714e] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Linear motor proteins including kinesin and myosin are promising biomaterials for developing nano-devices. Photoswitchable substrates of these biomotors can be used to optically regulate the motility of their associated cytoskeletal filaments in in vitro systems. Here, we describe the discovery of the myosin selective azobenzene-tethered triphosphate. It enables the specific photocontrol over myosin in a reversible mode with the composite motility assay composed of both kinesin and myosin. The mechanistic insight into this myosin selectivity is also explained with the docking simulation study.
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Affiliation(s)
- Md Jahirul Islam
- Research Institute for Electronic Science, Hokkaido University, Kita 20, Nishi 10, Kita-Ku, Sapporo, Japan.
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42
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Affiliation(s)
- Shizuka Anan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 13, Nishi 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
| | - Kenta Kokado
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 13, Nishi 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 13, Nishi 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
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43
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Inaba H, Yamamoto T, Iwasaki T, Kabir AMR, Kakugo A, Sada K, Matsuura K. Stabilization of microtubules by encapsulation of the GFP using a Tau-derived peptide. Chem Commun (Camb) 2019; 55:9072-9075. [DOI: 10.1039/c9cc04345d] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Encapsulation of the GFP inside microtubules by using a Tau-derived peptide increased the stability, rigidity, and velocity of microtubules.
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Affiliation(s)
- Hiroshi Inaba
- Department of Chemistry and Biotechnology
- Graduate School of Engineering, Tottori University
- Tottori 680-8552
- Japan
- Centre for Research on Green Sustainable Chemistry
| | - Takahisa Yamamoto
- Department of Chemistry and Biotechnology
- Graduate School of Engineering, Tottori University
- Tottori 680-8552
- Japan
| | - Takashi Iwasaki
- Department of Bioresources Science, Graduate School of Agricultural Sciences
- Tottori University
- Tottori 680-8553
- Japan
| | | | - Akira Kakugo
- Faculty of Science, Hokkaido University
- Sapporo 060-0810
- Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University
- Sapporo 060-0810
| | - Kazuki Sada
- Faculty of Science, Hokkaido University
- Sapporo 060-0810
- Japan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University
- Sapporo 060-0810
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology
- Graduate School of Engineering, Tottori University
- Tottori 680-8552
- Japan
- Centre for Research on Green Sustainable Chemistry
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44
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Sakamoto N, Ohta M, Kokado K, Sada K. Synthesis of pyramidal tetraarylborate pentads. NEW J CHEM 2019. [DOI: 10.1039/c9nj01772k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Tetrahedral tetraarylborate pentads were synthesized by a typical click reaction, copper-catalyzed azide–alkyne cyclization, which exhibited interesting ionic dissociation in low polar organic solvents.
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Affiliation(s)
- Nobuhito Sakamoto
- Graduate School of Chemical Sciences and Engineering and Faculty of Science
- Hokkaido University
- Sapporo
- Japan
| | - Masahiko Ohta
- Graduate School of Chemical Sciences and Engineering and Faculty of Science
- Hokkaido University
- Sapporo
- Japan
| | - Kenta Kokado
- Graduate School of Chemical Sciences and Engineering and Faculty of Science
- Hokkaido University
- Sapporo
- Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering and Faculty of Science
- Hokkaido University
- Sapporo
- Japan
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45
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Miyawaki Y, Sada K, Asano Y, Hayashi K, Yamamura Y, Hiramatsu S, Ohashi K, Morishita M, Watanabe H, Matsumoto Y, Kawabata T, Wada J. Progressive reduction of serum complement levels: a risk factor for relapse in patients with hypocomplementemia in systemic lupus erythematosus. Lupus 2018; 27:2093-2100. [DOI: 10.1177/0961203318804892] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Objective Serologically active clinically quiescent (SACQ)-SLE is a subtype of systemic lupus erythematosus (SLE); most SACQ-SLE patients relapse. Although complement and/or anti-dsDNA level fluctuations during SACQ status are reportedly not useful for predicting relapse, they might be useful in specific clinical settings. We aimed to assess the correlation between future relapse and progressive reductions in serum complement levels following remission in patients with hypocomplementemia . Methods We retrospectively reviewed patients aged ≥15 years who were treated with ≥20 mg/day of prednisolone for remission induction. After achieving remission, the patients treated with prednisolone tapered to ≤15 mg/day without relapse and followed by hypocomplementemia (first hypocomplementemia point) were analyzed. The primary outcome was the relapse during the first 24 months. Results Seventy-six patients were enrolled; 31 (40.8%) relapsed. A ≥10% reduction after the first hypocomplementemia point in serum C3, C4, and CH50 levels was found in 10, 21, and 16 patients, respectively. Hazard ratios (95% confidence intervals) for relapse were 2.32 (0.92–5.12) for serum C3 levels and 2.46 (1.18–5.01) for serum C4 levels. Progressive reductions in serum C3 and C4 levels had relatively high specificity (93.3% and 82.2%) but limited sensitivity (22.6% and 41.9%) for predicting relapse. However, simultaneous progressive reduction in C3 levels and increase in anti-dsDNA antibody levels had the highest specificity (97.8%), and simultaneous progressive reduction in C4 levels or increase in anti-dsDNA antibody levels had the highest sensitivity (71.0%). Conclusion Simultaneous progressive reductions in complement levels and increases in anti-dsDNA antibody levels may indicate future relapse SACQ-SLE patients.
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Affiliation(s)
- Y Miyawaki
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - K Sada
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - Y Asano
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - K Hayashi
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - Y Yamamura
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - S Hiramatsu
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - K Ohashi
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - M Morishita
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - H Watanabe
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - Y Matsumoto
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - T Kawabata
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
| | - J Wada
- Department of Nephrology, Rheumatology, Endocrinology and Metabolism, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan
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46
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Inaba H, Yamamoto T, Kabir AMR, Kakugo A, Sada K, Matsuura K. Cover Feature: Molecular Encapsulation Inside Microtubules Based on Tau-Derived Peptides (Chem. Eur. J. 56/2018). Chemistry 2018. [DOI: 10.1002/chem.201804321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hiroshi Inaba
- Department of Chemistry and Biotechnology; Graduate School of Engineering; Tottori University; Koyama-Minami 4-101 Tottori 680-8552 Japan
- Centre for Research on Green Sustainable Chemistry; Tottori University; Koyama-Minami 4-101 Tottori 680-8552 Japan
| | - Takahisa Yamamoto
- Department of Chemistry and Biotechnology; Graduate School of Engineering; Tottori University; Koyama-Minami 4-101 Tottori 680-8552 Japan
| | - Arif Md. Rashedul Kabir
- Faculty of Science; Hokkaido University; Kita 10 Nishi 8, Kita-ku Sapporo Hokkaido 060-0810 Japan
| | - Akira Kakugo
- Faculty of Science; Hokkaido University; Kita 10 Nishi 8, Kita-ku Sapporo Hokkaido 060-0810 Japan
- Graduate School of Chemical Sciences and Engineering; Hokkaido University; Hokkaido 060-0810 Japan
| | - Kazuki Sada
- Faculty of Science; Hokkaido University; Kita 10 Nishi 8, Kita-ku Sapporo Hokkaido 060-0810 Japan
- Graduate School of Chemical Sciences and Engineering; Hokkaido University; Hokkaido 060-0810 Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology; Graduate School of Engineering; Tottori University; Koyama-Minami 4-101 Tottori 680-8552 Japan
- Centre for Research on Green Sustainable Chemistry; Tottori University; Koyama-Minami 4-101 Tottori 680-8552 Japan
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47
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Inaba H, Yamamoto T, Kabir AMR, Kakugo A, Sada K, Matsuura K. Molecular Encapsulation Inside Microtubules Based on Tau-Derived Peptides. Chemistry 2018; 24:14958-14967. [PMID: 30088680 PMCID: PMC6220817 DOI: 10.1002/chem.201802617] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Indexed: 11/20/2022]
Abstract
Microtubules are cytoskeletal filaments that serve as attractive scaffolds for developing nanomaterials and nanodevices because of their unique structural properties. The functionalization of the outer surface of microtubules has been established for this purpose. However, no attempts have been made to encapsulate molecules inside microtubules with 15 nm inner diameter. The encapsulation of various molecular cargos inside microtubules constitutes a new concept for nanodevice and nanocarrier applications of microtubules. Here, we developed peptide motifs for binding to the inner surface of microtubules, based on a repeat domain of the microtubule‐associated protein Tau. One of the four Tau‐derived peptides, 2N, binds to a taxol binding pocket of β‐tubulin located inside microtubules by preincubation with tubulin dimer and subsequent polymerization of the peptide‐tubulin complex. By conjugation of 2N to gold nanoparticles, encapsulation of gold nanoparticles inside microtubules was achieved. The methodology for molecular encapsulation inside microtubules by the Tau‐derived peptide is expected to advance the development of microtubule‐based nanomaterials and nanodevices.
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Affiliation(s)
- Hiroshi Inaba
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552, Japan.,Centre for Research on Green Sustainable Chemistry, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552, Japan
| | - Takahisa Yamamoto
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552, Japan
| | - Arif Md Rashedul Kabir
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan
| | - Akira Kakugo
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan.,Graduate School of Chemical Sciences and Engineering, Hokkaido University, Hokkaido, 060-0810, Japan
| | - Kazuki Sada
- Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan.,Graduate School of Chemical Sciences and Engineering, Hokkaido University, Hokkaido, 060-0810, Japan
| | - Kazunori Matsuura
- Department of Chemistry and Biotechnology, Graduate School of Engineering, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552, Japan.,Centre for Research on Green Sustainable Chemistry, Tottori University, Koyama-Minami 4-101, Tottori, 680-8552, Japan
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48
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Sada K. Lipophilic Polyelectrolyte Gels and Crystal Crosslinking, New Methods for Supramolecular Control of Swelling and Collapsing of Polymer Gels. BCSJ 2018. [DOI: 10.1246/bcsj.20180096] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Kazuki Sada
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
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49
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Abstract
Recently we demonstrated swarming of a self-propelled biomolecular motor system microtubule (MT)-kinesin where interactions among thousands of motile MTs were regulated in a highly programmable fashion by using DNA as a processor. However, precise control of this potential system is yet to be achieved to optimize the swarm behavior. In this work, we systematically controlled swarming of MTs on kinesin adhered surface by different physicochemical parameters of MT-kinesin and DNA. Tuning the length of DNA sequences swarming was precisely controlled with thermodynamic and kinetic feasibility. In addition, swarming was regulated using different concentration of DNA crosslinkers. Reversibility of swarming was further controlled by changing the concentration of strand displacement DNA signal allowing dissociation of swarm. The control over the swarm was accompanied by variable stiffness of MTs successfully, providing translational and circular motion. Moreover, the morphology of swarm was also found to be changed not only depending on the stiffness but also body length of MTs. Such detail study of precise control of swarming would provide new insights in developing a promising molecular swarm robotic system with desired functions.
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Affiliation(s)
- Jakia Jannat Keya
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan
| | | | - Daisuke Inoue
- Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan
- Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Henry Hess
- Department of Biomedical Engineering, Columbia University, 1210 Amsterdam Ave., New York, NY, 10027, USA
| | - Akinori Kuzuya
- Department of Chemistry and Materials Engineering, Kansai University, Osaka, 564-8680, Japan.
| | - Akira Kakugo
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan.
- Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan.
- Department of Biomedical Engineering, Columbia University, 1210 Amsterdam Ave., New York, NY, 10027, USA.
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50
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Sasaki R, Kabir AMR, Inoue D, Anan S, Kimura AP, Konagaya A, Sada K, Kakugo A. Construction of artificial cilia from microtubules and kinesins through a well-designed bottom-up approach. Nanoscale 2018; 10:6323-6332. [PMID: 29557448 DOI: 10.1039/c7nr05099b] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Self-organized structures of biomolecular motor systems, such as cilia and flagella, play key roles in the dynamic processes of living organisms, like locomotion or the transportation of materials. Although fabrication of such self-organized structures from reconstructed biomolecular motor systems has attracted much attention in recent years, a systematic construction methodology is still lacking. In this work, through a bottom-up approach, we fabricated artificial cilia from a reconstructed biomolecular motor system, microtubule/kinesin. The artificial cilia exhibited a beating motion upon the consumption, by the kinesins, of the chemical energy obtained from the hydrolysis of adenosine triphosphate (ATP). Several design parameters, such as the length of the microtubules, the density of the kinesins along the microtubules, the depletion force among the microtubules, etc., have been identified, which permit tuning of the beating frequency of the artificial cilia. The beating frequency of the artificial cilia increases upon increasing the length of the microtubules, but declines for the much longer microtubules. A high density of the kinesins along the microtubules is favorable for the beating motion of the cilia. The depletion force induced bundling of the microtubules accelerated the beating motion of the artificial cilia and increased the beating frequency. This work helps understand the role of self-assembled structures of the biomolecular motor systems in the dynamics of living organisms and is expected to expedite the development of artificial nanomachines, in which the biomolecular motors may serve as actuators.
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Affiliation(s)
- Ren Sasaki
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan.
| | | | - Daisuke Inoue
- Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Shizuka Anan
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan.
| | - Atsushi P Kimura
- Graduate School of Life Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Akihiko Konagaya
- Department of Computational Intelligence and Systems Science, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | - Kazuki Sada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan. and Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Akira Kakugo
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-0810, Japan. and Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
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