1
|
Hirata AHDL, Camargo LADJR, da Silva VA, de Almeida RJ, Bacigalupo LDS, Albejante MC, Curi FSD, Varela P, Martins L, Pesquero JB, Delle H, Camacho CP. Exploring the Potential of Olfactory Receptor Circulating RNA Measurement for Preeclampsia Prediction and Its Linkage to Mild Gestational Hypothyroidism. Int J Mol Sci 2023; 24:16681. [PMID: 38069004 PMCID: PMC10706743 DOI: 10.3390/ijms242316681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 11/05/2023] [Accepted: 11/07/2023] [Indexed: 12/18/2023] Open
Abstract
Gestational hypothyroidism may lead to preeclampsia development. However, this pathophysiological is unknown. We expect to find a shared mechanism by comparing hypothyroidism and preeclampsia. From our transcriptome data, we recognized olfactory receptors as that fingerprint. The reduction of taste and smell in hypothyroid patients has been known for a long time. Therefore, we decided to look to the olfactory receptors and aimed to identify genes capable of predicting preeclampsia (PEC). Methods: An Ion Proton Sequencer (Thermo Fisher Scientific, Waltham, MA, USA) was used to construct the transcriptome databases. RStudio with packages Limma v.3.50.0, GEOquery v.2.62.2, and umap v.0.2.8.8 were used to analyze the differentially expressed genes in GSE149440 from the Gene Expression Omnibus (GEO). The 7500 Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) was used for RT-qPCR amplification of OR6X1 and OR4E2. Results: Our transcriptomic datasets analysis revealed 25.08% and 26.75% downregulated olfactory receptor (ORs) in mild nontreated gestational hypothyroidism (GHT) and PEC, respectively. In the GSE149440 GEO dataset, we found OR5H1, OR5T3, OR51A7, OR51B6, OR10J5, OR6C6, and OR2AG2 as predictors of early-onset PEC. We also evaluate two chosen biomarkers' responses to levothyroxine. The RT-qPCR demonstrated a difference in OR6X1 and OR4E2 expression between GHT and healthy pregnancy (p < 0.05). Those genes presented a negative correlation with TSH (r: -0.51, p < 0.05; and r: -0.44, p < 0.05), a strong positive correlation with each other (r: 0.89; p < 0.01) and the levothyroxine-treated group had no difference from the healthy one. We conclude that ORs could be used as biomarkers at the beginning of gestation, and the downregulated ORs found in GHT may be improved with levothyroxine treatment.
Collapse
Affiliation(s)
- Andréa Harumy de Lima Hirata
- Molecular Innovation and Biotechnology Laboratory, Postgraduate Program in Medicine, Universidade Nove de Julho (Uninove), Rua Vergueiro, 235/249, São Paulo 01525-000, SP, Brazil
| | - Luiz Antônio de Jesus Rocha Camargo
- Molecular Innovation and Biotechnology Laboratory, Postgraduate Program in Medicine, Universidade Nove de Julho (Uninove), Rua Vergueiro, 235/249, São Paulo 01525-000, SP, Brazil
- Thyroid Diseases Center, Laboratory of Molecular and Translational Endocrinology, Division of Endocrinology, Department of Medicine, Escola Paulista de Medicina, Universidade Federal de São Paulo, Rua Pedro de Toledo 669, 11th Floor, São Paulo 04039-032, SP, Brazil
| | - Valdelena Alessandra da Silva
- Molecular Innovation and Biotechnology Laboratory, Postgraduate Program in Medicine, Universidade Nove de Julho (Uninove), Rua Vergueiro, 235/249, São Paulo 01525-000, SP, Brazil
| | - Robson José de Almeida
- Molecular Innovation and Biotechnology Laboratory, Postgraduate Program in Medicine, Universidade Nove de Julho (Uninove), Rua Vergueiro, 235/249, São Paulo 01525-000, SP, Brazil
| | - Lucas dos Santos Bacigalupo
- Molecular Innovation and Biotechnology Laboratory, Postgraduate Program in Medicine, Universidade Nove de Julho (Uninove), Rua Vergueiro, 235/249, São Paulo 01525-000, SP, Brazil
- Department of Obstetrics and Gynecology, Conjunto Hospitalar do Mandaqui, Rua Voluntários da Pátria, 4301, São Paulo 02401-400, SP, Brazil
| | - Maria Clara Albejante
- Molecular Innovation and Biotechnology Laboratory, Postgraduate Program in Medicine, Universidade Nove de Julho (Uninove), Rua Vergueiro, 235/249, São Paulo 01525-000, SP, Brazil
- Department of Obstetrics and Gynecology, Conjunto Hospitalar do Mandaqui, Rua Voluntários da Pátria, 4301, São Paulo 02401-400, SP, Brazil
| | - Flavia Salomão d’Avila Curi
- Department of Obstetrics and Gynecology, Conjunto Hospitalar do Mandaqui, Rua Voluntários da Pátria, 4301, São Paulo 02401-400, SP, Brazil
| | - Patrícia Varela
- Center for Research and Molecular Diagnostic of Genetic Diseases, Department of Biophysics, Universidade Federal de São Paulo (UNIFESP), Rua Pedro de Toledo 669, 9th Floor, São Paulo 04039-032, SP, Brazil
- McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Leonardo Martins
- Center for Research and Molecular Diagnostic of Genetic Diseases, Department of Biophysics, Universidade Federal de São Paulo (UNIFESP), Rua Pedro de Toledo 669, 9th Floor, São Paulo 04039-032, SP, Brazil
- Division of Medical Sciences, Laboratory of Transcriptional Regulation, Institute of Medical Biology of Polish Academy of Sciences (IMB-PAS), Lodowa 106, 93-232 Łódź, Poland
| | - João Bosco Pesquero
- Center for Research and Molecular Diagnostic of Genetic Diseases, Department of Biophysics, Universidade Federal de São Paulo (UNIFESP), Rua Pedro de Toledo 669, 9th Floor, São Paulo 04039-032, SP, Brazil
| | - Humberto Delle
- Molecular Innovation and Biotechnology Laboratory, Postgraduate Program in Medicine, Universidade Nove de Julho (Uninove), Rua Vergueiro, 235/249, São Paulo 01525-000, SP, Brazil
| | - Cleber P. Camacho
- Molecular Innovation and Biotechnology Laboratory, Postgraduate Program in Medicine, Universidade Nove de Julho (Uninove), Rua Vergueiro, 235/249, São Paulo 01525-000, SP, Brazil
- Thyroid Diseases Center, Laboratory of Molecular and Translational Endocrinology, Division of Endocrinology, Department of Medicine, Escola Paulista de Medicina, Universidade Federal de São Paulo, Rua Pedro de Toledo 669, 11th Floor, São Paulo 04039-032, SP, Brazil
| |
Collapse
|
2
|
Harumy de Lima Hirata A, Antonio de Jesus Rocha L, Alessandra da Silva V, Jose de Almeida R, dos Santos Bacigalupo L, Clara Albejante M, Hoon Yang J, Delle H, Pinto Camacho C. MON-LB094 Matrix Metalloproteinases Are Linked with Preeclampsia and May Be Useful as a Biomarker in Gestational Subclinical Hypothyroidism. J Endocr Soc 2019. [PMCID: PMC6550621 DOI: 10.1210/js.2019-mon-lb094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
Gestational hypothyroidism has 5.1% prevalence and is associated with severe consequences as hypertensive complications and preeclampsia (PE). Based on the higher mortality associated with PE, the objective of this study is to identify new biomarkers useful as prognostic and therapeutically parameters. Methodology: The study was approved by the IRB Number: 665331/679727. We selected three volunteers to each group and constructed libraries of circulating RNA, for healthy pregnant women (HPW), preeclampsia (PEC) and gestational hypothyroidism (GHT). We collected blood samples for TSH and Free T4 (FT4) measurement and a PAX Gene Tube for RNA analysis. RNA extraction was performed by the PAXgene Blood RNA extraction kit (Qiagen NL, DE). NGS platform, Ion Proton System was used with Ion AmpliSeq Gene human transcriptome (Thermo Fisher Scientific Manufacturer) kit to construct the transcriptome libraries. The R software platform version 3.4.1 (R Foundation for Statistical Computing, Vienna, Austria. URL: R-project.org/) with the edgeR package 3.16.5 were used to determine the differentially expressed genes (DEG). We compared our GHT DEG with plasma transcriptome libraries from healthy pregnant women in the second and third trimesters (access number: GSE56899) available in GEO Dataset (ncbi.nlm.nih.gov/geo) using the limma package 3.26.8, p <0,05. We also used Random Forest (RF) analysis to rank the variables, Spearman Correlation, and multiclass ROC. Results: We encountered 713 DEG in the HPW with matrix metalloproteinases (MMP) upregulated, MMP8 (logFC 4.91) and MMP9 (logFC 3.44). In GEO Dataset we also found the MMP8 upregulated. We detected 195 DEG in PEC with MMP9 downregulated (logFC -2.49) and 745 DEG in GHT with MMP8 (logFC -4.06) and MMP9 (logFC -3.26) downregulated. We obtained 571 DEG in the analysis obtained by GEO Dataset and 26 genes are in common with our GHT DEG, including the MMP8. Between the 26 in common, 88.46% of genes were downregulated in GHT and 92.30% were upregulated GEO Dataset. We found a negative correlation of MMP8 with systolic blood pressure (SBP) and diastolic blood pressure (DBP) (r: -0.313; r: -0.285), MMP9 with SBP and DBP (r: -0.349; r: -0.384), MMP8 and MMP9 with weight (r: -0.223; r: -0.209) and MMP9 with TSH (r: 0.633). From our RF model, we selected the variables SBP and DBP, FT4 and weight that is possibly modified by the difference in expression of MMP8 and MMP9. We obtained an area under the curve of 0.97 for TSH, weight and those genes. Conclusion: Several metalloproteinases are involved in placental development, implantation and angiogenesis. We observed MMP8 and MMP9 downregulated in GHT. Although more studies are necessary, we found in the predictive model, TSH, weight and MMP8/MMP9 as the best combination to predict PE in GHT. Sources of Research Support: CNPq awarded to HD; Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) awarded to CPC Unless otherwise noted, all abstracts presented at ENDO are embargoed until the date and time of presentation. For oral presentations, the abstracts are embargoed until the session begins. Abstracts presented at a news conference are embargoed until the date and time of the news conference. The Endocrine Society reserves the right to lift the embargo on specific abstracts that are selected for promotion prior to or during ENDO.
Collapse
Affiliation(s)
- Andrea Harumy de Lima Hirata
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| | - Luiz Antonio de Jesus Rocha
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| | - Valdelena Alessandra da Silva
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| | - Robson Jose de Almeida
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| | - Lucas dos Santos Bacigalupo
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| | - Maria Clara Albejante
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| | - Ji Hoon Yang
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| | - Humberto Delle
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| | - Cleber Pinto Camacho
- Molecular Innovation and Biotechnology Laboratory - Medical Postgraduation Division, Universidade Nove de Julho (UNINOVE), São Paulo, , Brazil
| |
Collapse
|