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Butt M, Perveen S, Rasool F, Ayub A, Ali K, Sajjad A, Nasir MF, Kanwal S, Muzammil E, Chaudhary I, Magsi AS. Genetic variation between hybrid (Labeo rohita ♂, Cirrhinus mrigala ♀ and Labeo rohita) by RAPD marker. BRAZ J BIOL 2023; 84:e268551. [PMID: 37018768 DOI: 10.1590/1519-6984.268551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 01/04/2023] [Indexed: 04/07/2023] Open
Abstract
The present work was to study the genetic variability between the major carps Labeo rohita and Cirrhinus mrigala and their hybrids of L. rohita (male♂) and C. mrigala (female♀). Genetic variability was studied by employing RAPD molecular markers. 25 samples of each target species having different sizes with the same age group for the determination of interspecific variation were collected. The morphometric parameters such as body weight, total length, tail length, and lengths of dorsal and anal fins of each individual were recorded and results showed that wet body weight, total length, dorsal fin, anal fin, and tail fin length are positively correlated and then the DNA was extracted using the inorganic salt-based method and conformed by Gel electrophoresis. Twenty-four arbitrary decamer primers were used to get species-specific RAPD analysis Distinct and highly reproducible RAPD profiles with significant genetic variability was detected among species. Only five primers showed amplification. The RAPAD primer OPB-05 produced a total of seven bands out of these 5 monomorphic and 2 polymorphic, so in this case, the percentage polymorphism was 28.57%. The Hybrid show more than a 50% difference from the Labeo rohita. This shows that the Hybrid more resembles C.mrigala. Phylogenetic analysis demonstrated that hybrid (L. rohita ♂ X Cirrhinus mrigala ♀) is the closest to C. mrigala and the farthest from L. rohita. Overall data are presented concerning the applications of RAPD markers for hybrid identification, genetic diversity assessment, and studying taxonomic relationships at a molecular level.
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Affiliation(s)
- M Butt
- Chung-Ang University, Department of Life Science, Seoul, Republic of Korea
| | - S Perveen
- Institute of Ocean Engineering, Ningbo University, Ningbo, China
- Ministry of Education, Key Laboratory of Applied Marine Biotechnology, Ningbo, China
- Ningbo University, School of Marine Sciences, State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Ningbo, China
| | - F Rasool
- University of Education, Department of Zoology, Faisalabad Campus, Lahore, Pakistan
| | - A Ayub
- University of Agriculture Faisalabad, Depalpur, Okara, Pakistan
| | - K Ali
- University of Education, Department of Zoology, Vehari Campus, Lahore, Pakistan
| | - A Sajjad
- Quaid-I-Azam University, Department of Environmental Sciences, Islamabad, Pakistan
| | - M F Nasir
- University of Education, Department of Zoology, Division of Science & Technology, Lahore, Punjab, Pakistan
| | - S Kanwal
- University of Okara, Department of Zoology, Punjab, Pakistan
| | - E Muzammil
- Shaheed Benazir Bhutto University of Veterinary and Animal Sciences, Department of Poultry Production, Sakrand, Pakistan
| | - I Chaudhary
- University of Veterinary and Animal Sciences, Department of Aquaculture and Fisheries, Lahore, Pakistan
| | - A S Magsi
- Shaheed Benazir Bhutto University of Veterinary and Animal Sciences, Faculty of Animal Production and Technology, Department of Dairy Technology, Sakrand, Pakistan
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Hassan S, Naeem M, Nasir MF, Riaz P, Khan MN, Atiq I. Molecular based identification and phylogenetic relationship by using cytochrome b gene of Pangasius pangasius. BRAZ J BIOL 2022; 84:e268001. [PMID: 36541960 DOI: 10.1590/1519-6984.268001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Accepted: 10/10/2022] [Indexed: 12/24/2022] Open
Abstract
Molecular appraoch for identification of unknown species by using Cytochrome b gene is an effective and reliable as compared with morphological based identification. For DNA barcoding universal molecular genes were used to identify the species. Cytochrome b is a specific gene used for identification purpose. DNA barcoding is a reliable and effective method compared to the different traditional morphological methods of specie identification. So,in the present study which was conducted to identify the species, a total of 50 fish samples were collected from five different sites. DNA was extracted by using the Phenol Chloroform method from muscle tissue. Five sequences were sequenced (one from each site), analyzed, and identified specific species as Pangasius pangasius. Identified sequences were variable in length from 369 bp (Site 1), 364 bp (Site 2), 364 bp (Site 3), 352 bp (Site 4), and 334 bp (Site 5). Identity matches on the NCBI database confirmed the specific specie as P. pangasius. A distancing tree was drawn to show maximum likelihood among the same and different species. Yet, in many cases fishes on diverse development stages are difficult to identify by morphological characters. DNA-based identification methods offer an analytically powerful addition or even an alternative tool for species identification and phylogenetic study. This work intends to provide an updated and extensive overview on the DNA based methods for fish species identification by using Cytochrome b gene as targeted markers for identification purpose.
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Affiliation(s)
- S Hassan
- Bahauddin Zakariya University, Institute of Zoology, Multan, Punjab, Pakistan
| | - M Naeem
- Bahauddin Zakariya University, Institute of Zoology, Multan, Punjab, Pakistan
| | - M Farhan Nasir
- University of Education, Department of Zoology, Division of Science & Technology, Lahore, Punjab, Pakistan
| | - P Riaz
- Bahauddin Zakariya University, Institute of Zoology, Multan, Punjab, Pakistan
| | - M N Khan
- University of Jhang, Department of Zoology, Jhang, Punjab, Pakistan
| | - I Atiq
- Ghazi University Dera Ghazi Khan, Department of Zoology, Punjab, Pakistan
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Ali K, Iqbal A, Bukhari SM, Safdar S, Raiz A, Ali W, Hussain A, Javid A, Hussain M, Ali MM, Mahmud A, Iqbal MJ, Nasir MF, Mubeen I, Kanwal S, Sughra F, Khattak A, Saleem M. Amelioration potential of Moringa oleifera extracts against sodium arsenate induced embryotoxicity and genotoxicity in mouse (Mus musculus). BRAZ J BIOL 2021; 83:e248022. [PMID: 34468531 DOI: 10.1590/1519-6984.248022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 03/09/2021] [Indexed: 11/21/2022] Open
Abstract
Previous studies have suggested that arsenic crosses the placenta and affects the fetus development. The study under consideration aims to show comparative ameliorative effect of Moringa oleifera leaf and flower extracts against sodium arsenate induced fetus toxicity of mice. Pregnant mice (N=44) were kept in lab and divided into eleven group from (A to K) and were orally administered the doses 6 mg/kg, 12 mg/kg for sodium arsenate, 150 mg/kg and 300 mg/kg for Moringa oleifera leaf extracts (MOLE) and 150 mg/kg and 300 mg/kg for Moringa oleifera flower extracts (MOFE) comparing with control. The investigation revealed evident reduction in the fetuses weight, hind limb, fore limb, tail and snout length, crown rump and head circumferences well as malformations in tail, feet, arms, legs, skin and eyes in the negative control group (only administered with sodium arsenate). Co-administration of sodium arsenate with MOLE and MOFE ameliorate the reversed effect of sodium arsenate on the shape, length, body weight and DNA damage of fetus significantly at 95% confidence interval. However, Moringa oleifera leaf extract showed more significant results in comparison to Moringa oleifera flower extract. Hence concluded that Moringa oleifera leaf extract ameliorated the embryo toxic effects of sodium arsenate and can be used against environmental teratogens.
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Affiliation(s)
- K Ali
- University of Veterinary & Animal Sciences, Department of Wildlife & Ecology, Lahore, Pakistan
| | - A Iqbal
- University of Veterinary & Animal Sciences, Department of Wildlife & Ecology, Lahore, Pakistan
| | - S M Bukhari
- University of Veterinary & Animal Sciences, Department of Wildlife & Ecology, Lahore, Pakistan
| | - S Safdar
- University of Veterinary & Animal Sciences, Department of Wildlife & Ecology, Lahore, Pakistan
| | - A Raiz
- Department of Zoology, GC Women University, Faisalabad, Pakistan
| | - W Ali
- University of Veterinary & Animal Sciences, Department of Wildlife & Ecology, Lahore, Pakistan
| | - A Hussain
- University of Veterinary & Animal Sciences, Department of Wildlife & Ecology, Lahore, Pakistan
| | - A Javid
- University of Veterinary & Animal Sciences, Department of Wildlife & Ecology, Lahore, Pakistan
| | - M Hussain
- University of Veterinary & Animal Sciences, Department of Wildlife & Ecology, Lahore, Pakistan
| | - M M Ali
- University of Veterinary & Animal Sciences, Institute of Biochemistry and Biotechnology, Lahore, Pakistan
| | - A Mahmud
- University of Veterinary & Animal Sciences, Department of Poultry Production, Lahore, Pakistan
| | - M J Iqbal
- Bahauddin Zakariya University, Department of Zoology, Multan, Pakistan
| | - M F Nasir
- Bahauddin Zakariya University, Department of Zoology, Multan, Pakistan
| | - I Mubeen
- Government College University, Department of Zoology, Lahore, Pakistan
| | - S Kanwal
- University of Okara, Department of Zoology, Okara, Pakistan
| | - F Sughra
- University of Education, Department of Zoology, Division of Science & Technology, Lahore, Pakistan
| | - A Khattak
- Department of Bioinformatics, Shaheed Benazir Bhutto Women University, Peshawar, Pakistan
| | - M Saleem
- Department of Zoology, Virtual University of Lahore, Lahore, Pakistan
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