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Cheki M, Mostafaei S, Hanafi MG, Farasat M, Talaiezadeh A, Ghasemi MS, Modava M, Abdollahi H. Radioproteomics modeling of metformin-enhanced radiosensitivity: an animal study. Jpn J Radiol 2023; 41:1265-1274. [PMID: 37204669 DOI: 10.1007/s11604-023-01445-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 05/08/2023] [Indexed: 05/20/2023]
Abstract
PURPOSE Metformin is considered as radiation modulator in both tumors and healthy tissues. Radiomics has the potential to decode biological mechanisms of radiotherapy response. The aim of this study was to apply radiomics analysis in metformin-induced radiosensitivity and finding radioproteomics associations of computed tomography (CT) imaging features and proteins involved in metformin radiosensitivity signaling pathways. MATERIALS AND METHODS A total of 32 female BALB/c mice were used in this study and were subjected to injection of breast cancer cells. When tumors reached a mean volume of 150 mm3, mice were randomly divided into the four groups including Control, Metformin, Radiation, and Radiation + Metformin. Western blot analysis was performed after treatment to measure expression of proteins including AMPK-alpha, phospho-AMPK-alpha (Thr172), mTOR, phospho-mTOR (Ser2448), phospho-4EBP1 (Thr37/46), phospho-ACC (Ser79), and β-actin. CT imaging was performed before treatment and at the end of treatment in all groups. Radiomics features extracted from segmented tumors were selected using Elastic-net regression and were assessed in terms of correlation with expression of the proteins. RESULTS It was observed that proteins including phospho-mTOR, phospho-4EBP1, and mTOR had positive correlations with changes in tumor volumes in days 28, 24, 20, 16, and 12, while tumor volume changes at these days had negative correlations with AMPK-alpha, phospho-AMPK-alpha, and phospho-ACC proteins. Furthermore, median feature had a positive correlation with AMPK-alpha, phospho-ACC, and phospho-AMPK-alpha proteins. Also, Cluster shade feature had positive correlations with mTOR and p-mTOR. On the other hand, LGLZE feature had negative correlations with AMPK-alpha and phospho-AMPK-alpha. CONCLUSION Radiomics features can decode proteins that involved in response to metformin and radiation, although further studies are warranted to investigate the optimal way to integrate radiomics into biological experiments.
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Affiliation(s)
- Mohsen Cheki
- Cancer Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
- Department of Medical Imaging and Radiation Sciences, Faculty of Paramedicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
| | - Shayan Mostafaei
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | | | - Maryam Farasat
- Department of Radiology, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | | | | | - Mohammad Modava
- Department of Electrical Engineering, Faculty of Engineering, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | - Hamid Abdollahi
- Department of Radiology Technology, Faculty of Allied Medical Sciences, Kerman University of Medical Sciences, Kerman, Iran.
- Department of Integrative Oncology, BC Cancer Research Institute, Vancouver, BC, Canada.
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Mohammadi SM, Moniri S, Mohammadhoseini P, Hanafi MG, Farasat M, Cheki M. A Computed Tomography-Based Radiomics Analysis of Low-Energy Proximal Femur Fractures in the Elderly Patients. Curr Radiopharm 2023:CRP-EPUB-130294. [PMID: 36944624 DOI: 10.2174/1874471016666230321120941] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 01/06/2023] [Accepted: 01/18/2023] [Indexed: 03/23/2023]
Abstract
INTRODUCTION Low-energy proximal femur fractures in elderly patients result from factors, like osteoporosis and falls. These fractures impose high rates of economic and social costs. In this study, we aimed to build predictive models by applying machine learning (ML) methods on radiomics features to predict low-energy proximal femur fractures. METHODS Computed tomography scans of 40 patients (mean ± standard deviation of age = 71 ± 6) with low-energy proximal femur fractures (before a fracture occurs) and 40 individuals (mean ± standard deviation of age = 73 ± 7) as a control group were included. The regions of interest, including neck, trochanteric, and intertrochanteric, were drawn manually. The combinations of 25 classification methods and 8 feature selection methods were applied to radiomics features extracted from ROIs. Accuracy and the area under the receiver operator characteristic curve (AUC) were used to assess ML models' performance. RESULTS AUC and accuracy values ranged from 0.408 to 1 and 0.697 to 1, respectively. Three classification methods, including multilayer perceptron (MLP), sequential minimal optimization (SMO), and stochastic gradient descent (SGD), in combination with the feature selection method, SVM attribute evaluation (SAE), exhibited the highest performance in the neck (AUC= 0.999, 0.971 and 0.971, respectively; accuracy = 0.988, 0.988, and 0.988, respectively) and the trochanteric (AUC = 1, 1 and 1, respectively; accuracy = 1, 1 and 1, respectively) regions. The same methods demonstrated the highest performance for the combination of the 3 ROIs' features (AUC = 1, 1 and 1, respectively; accuracy =1, 1 and 1, respectively). In the intertrochanteric region, the combination methods, MLP+SAE, SMO+SAE, and SGD+SAE, as well as the combination of the SAE method and logistic regression (LR) classification method exhibited the highest performance (AUC= 1, 1, 1 and 1, respectively; accuracy= 1, 1, 1 and 1, respectively). CONCLUSION Applying machine learning methods to radiomics features is a powerful tool to predict low-energy proximal femur fractures. The results of this study can be verified by conducting more research on bigger datasets.
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Affiliation(s)
- Seyed Mohammad Mohammadi
- Department of Orthopedics and Traumatology, Faculty of medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Samir Moniri
- Department of Medical Imaging and Radiation Sciences, Faculty of Paramedicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Payam Mohammadhoseini
- Department of Orthopedics and Traumatology, Faculty of medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | | | - Maryam Farasat
- Department of Radiology, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Mohsen Cheki
- Department of Medical Imaging and Radiation Sciences, Faculty of Paramedicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
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Gokce Ozcan B, Pirildar T, Ulman C, Farasat M. POS1095 RELATIONSHIP BETWEEN PLASMA IL-12, IL-23 LEVELS AND ENDOTHELIAL DYSFUNCTION IN PATIENTS WITH PSORIATIC ARTHRITIS. Ann Rheum Dis 2022. [DOI: 10.1136/annrheumdis-2022-eular.4368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
BackgroundPsoriatic arthritis (PsA) is a heterogeneous, chronic, inflammatory spondyloarthropathy associated with psoriasis. PsA is accompanied by many comorbidities, especially hypertension, metabolic syndrome, obesity, hyperlipidemia and cardiovascular diseases (CVD) (1). Mediators that cause chronic inflammation such as IL-23R, IL-17, IL-12B are thought to play an important role in the pathogenesis of both PsA and its comorbidities (2,3).ObjectivesThe aim of our study was to compare plasma levels of IL-12 and IL-23 with endothelium-dependent (FMD) and independent dilatation (NMD) measurements in psoriatic arthritis (PsA), ankylosing spondylitis (AS) patients and healthy controls and to look for the relationship of IL-12, IL-23 with FMD, NMD, clinical findings, laboratory parameters and disease activity scores of patients.MethodsA total of 136 subjects (49 patients with PsA, 46 patients with AS and 41 healthy controls) were included in the study. Subjects were evaluated with detailed anamnesis and physical examination. The routine biochemical parameters, CRP, ESR of all subjects and disease activity scores of all patients were noted. IL-12 and IL-23 were measured using ELISA method. Endothelial-dependent and independent dilatations were measured by Doppler USG on the brachial artery.ResultsThough IL-12 levels were higher in the PsA group when compared with the healthy group, this difference was not statistically significant. IL-23 levels were significantly higher in PsA patients when compared with the healthy control group (Table 1). IL-12 and IL-23 levels were found to be significantly higher in the AS group compared with the healthy group. A statistically significant difference in endothelial dependent measures were found between PsA patients and healthy controls. No statistically significant correlation was found between IL-12, IL-23 levels and brachial artery basal diameter, FMD, NMD values in PsA patients. Fasting blood glucose and triglyceride levels were higher in PSA patients, while CRP and ESR were higher in AS patients. HDL levels of healthy controls were higher than those of PSA and AS patients. There was no significant correlation between IL-12, IL-23 and BASDAI, BASFI, DAPSA, DAS 28, PsAQoL, HAQ, HAD-A, VAS scores in PSA group; hospital anxiety and depression scale (HAD) and BASMI were positively correlated with IL-23. In the AS group, IL-23 was correlated with VAS and BASMI and IL-12 was correlated with HAQ score.Table 1.The average of the interleukin levels according to the diagnoses of the participantspIL 12PSA0,0070,027ASPSA0,995Healthy ControlAS0,009Healthy ControlIL 23PSA0,706<0,001ASPSA0,006Healthy ControlAS0,010Healthy ControlConclusionIn the PsA group, IL-23 levels and FMD values were higher than the healthy group in our study. The risk of metabolic syndrome and CVD increases due to high insidence of glucose dysregulation, dyslipidemia and obesity in these patients. PsA patients should be monitored for the development of these comorbidities and preventive measures should be taken. More studies are necessary to examine the relationship between IL-12, IL-23 levels and endothelial dysfunction, which is an early indicator of CVD and atherosclerosis in PsA patients.References[1]Gupta S, Syrimi Z, Hughes DM, et al. Comorbidities in psoriatic arthritis: a systematic review and meta-analysis. Rheumatol Int. 2021;41(2):275-284. doi:10.1007/s00296-020-04775-2[2]Perez-Chada LM, Merola JF. Comorbidities associated with psoriatic arthritis: Review and update. Clin Immunol. 2020;214:108397. doi: 10.1016/j.clim.2020.108397.[3]Egeberg A, Gisondi P, Carrascosa JM, et al. The role of the interleukin-23/Th17 pathway in cardiometabolic comorbidity associated with psoriasis. J Eur Acad Dermatol Venereol. 2020;34(8):1695-1706. doi: 10.1111/jdv.16273AcknowledgementsThe authors would like to thank the Manisa Celal Bayar University Scientific Research Projects Coordination Department under the Grant No. 2021-021 for the supports.Disclosure of InterestsNone declared
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Khorsandi L, Farasat M. Zinc oxide nanoparticles enhance expression of maspin in human breast cancer cells. Environ Sci Pollut Res Int 2020; 27:38300-38310. [PMID: 32621200 DOI: 10.1007/s11356-020-09986-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Accepted: 07/01/2020] [Indexed: 06/11/2023]
Abstract
Toxic and apoptotic impacts of zinc oxide nanoparticle (ZNP) on different cancer cells have been reported. Maspin (a mammary serine protease inhibitor) as a tumor suppressor gene can inhibit tumor growth and metastasis. The expression of maspin is modulated by p53, Bcl-2 family genes, and estrogen receptor α (ER-α). This study aimed to assess the ZNP effects on maspin expression in MCF-7 cells (a breast cancer cell). Experimental groups (ZNP5, ZNP10, and ZNP20) received 5, 10, and 20 μM/mL ZNP for 48 h, respectively. 17-β-estradiol (E2) was used to evaluate the role of ER-α in the anticancer impact of ZNP. Cell viability, Annexin V, migration assay, gene expression, and western blotting methods were applied to evaluate ZNP effects on the MCF-7 cells. ZNP at the concentrations of 10 and 20 μM/mL could significantly decrease the viability and migration rate, and significantly increase apoptosis percentage in the MCF-7 cells. ZNP significantly enhanced mRNA expression and protein level of maspin in MCF-7 cells in a concentration-dependent way. ZNP concentration-dependently elevated mRNA expression and protein level of p53 and Bax while reduced the expression of Bcl-2 and ER-α. E2 promoted cancer cell growth by enhancing survival and migration rates. E2 treatment reduced mRNA expression and protein level of maspin and p53, and elevated Bcl-2 expression. ZNP considerably changed these events induced by E2 in the MCF-7 cells. It is concluded that the maspin overexpression is one of the toxic mechanisms of the ZNP on the ER-α-positive breast cancer cells, and can suppress the migration of these cells.
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Affiliation(s)
- Layasadat Khorsandi
- Cellular and Molecular Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
- Department of Anatomical Sciences, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran.
| | - Maryam Farasat
- Department of Anatomical Sciences, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
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Sarafraz M, Heidari M, Bayat A, Hanafi MG, Fahimi A, Farasat M, Saki N, Molaei J. Role of HRCT imaging in predicting the visibility of Round window (RW) on patients underwent cochlear implant surgery. Clinical Epidemiology and Global Health 2020. [DOI: 10.1016/j.cegh.2019.10.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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Hasdemir PS, Farasat M, Aydin C, Ozyurt BC, Guvenal T, Pekindil G. The Role of Adenomyosis in the Pathogenesis of Preeclampsia. Geburtshilfe Frauenheilkd 2016; 76:882-887. [PMID: 27582582 DOI: 10.1055/s-0042-107080] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
INTRODUCTION Adenomyosis can cause defective deep placentation. Preeclampsia is known to be associated with abnormal placentation. The aim of this study was to compare the presence of adenomyosis on magnetic resonance imaging in patients with and without history of preeclampsia in order to investigate the possible role of adenomyosis in the pathogenesis of preeclampsia. MATERIALS AND METHODS This prospective, randomized study consisted of patients with (n = 35) and without (n = 34) history of preeclampsia. Direct (submucosal microcysts, adenomyoma and cystic adenomyoma) and indirect (maximal thickness of junctional zone, ratio of maximal thickness of junctional zone to myometrial thickness, junctional zone differential, focal thickening of junctional zone, globally enlarged uterus and non-uniform junctional zone contours) signs of adenomyosis were assessed by pelvic magnetic resonance imaging. RESULTS The prevalence of adenomyosis was found to be more common in patients with preeclampsia und fetal growth restriction compared to patients without fetal growth restriction (94.4 vs. 64.7 %; p = 0.041), respectively. There was a strong association between maximal thickness of junctional zone (9 vs. 13 mm, p = 0.005), ratio of maximal thickness of junctional zone to myometrial thickness (0.42 vs. 0.66, p = 0.001) and junctional zone differential (3 vs. 5 mm, p = 0.02) and late-onset preeclampsia. CONCLUSIONS Presence of adenomyoma is more common in patients with preeclampsia complicated with fetal growth restriction. Indirect signs of adenomyosis detected on pelvic magnetic resonance imaging might have a role in the pathogenesis of late-onset preeclampsia.
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Affiliation(s)
- P S Hasdemir
- Department of Obstetrics and Gynecology, Celal Bayar University Medical School, Manisa, Turkey
| | - M Farasat
- Department of Radiology, Celal Bayar University Medical School, Manisa, Turkey
| | - C Aydin
- Department of Obstetrics and Gynecology, Celal Bayar University Medical School, Manisa, Turkey
| | - B C Ozyurt
- Department of Public Health, Celal Bayar University Medical School, Manisa, Turkey
| | - T Guvenal
- Department of Obstetrics and Gynecology, Celal Bayar University Medical School, Manisa, Turkey
| | - G Pekindil
- Department of Radiology, Celal Bayar University Medical School, Manisa, Turkey
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Orazizadeh M, Khodadadi A, Bayati V, Saremy S, Farasat M, Khorsandi L. In Vitro Toxic Effects of Zinc Oxide Nanoparticles on Rat Adipose Tissue-Derived Mesenchymal Stem Cells. Cell J 2015; 17:412-21. [PMID: 26464812 PMCID: PMC4601861 DOI: 10.22074/cellj.2015.2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Accepted: 09/17/2014] [Indexed: 12/18/2022]
Abstract
Objective Zinc oxide nanoparticles (ZnO-NPs) are increasingly used in sunscreens, bio-
sensors, food additives, pigments, manufacture of rubber products, and electronic materi-
als. There are several studies about the effects of NPs on dermal fibroblast or keratino-
cytes, but very little attention has been directed towards adipose-derived mesenchymal
stem cells (ASCs). A previous study has revealed that ZnO-NPs restricted the migration
capability of ASCs. However, the potential toxicity of these NPs on ASCs is not well un-
derstood. This study intends to evaluate the effects of ZnO-NPs on subcutaneous ASCs.
Materials and Methods In this experimental study, In order to assess toxicity, we ex-
posed rat ASCs to ZnO-NPs at concentrations of 10, 50, and 100 µg/ml for 48 hours. Tox-
icity was evaluated by cell morphology changes, cell viability assay, as well as apoptosis
and necrosis detection.
Results ZnO-NPs concentration dependently reduced the survival rates of ASCs as re-
vealed by the trypan blue exclusion and 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazo-
lium-bromide (MTT) tests. ZnO-NPs, at concentrations of 10 and 50 µg/ml, induced a
significant increase in apoptotic indices as shown by the annexin V test. The concentration
of 10 µg/ml of ZnO-NPs was more toxic.
Conclusion Lower concentrations of ZnO-NPs have toxic and apoptotic effects on
subcutaneous ASCs. We recommend that ZnO-NPs be used with caution if there is a
dermatological problem.
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Affiliation(s)
- Mahmoud Orazizadeh
- Cell and Molecular Research Center, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran ; Department of Anatomical Sciences, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Ali Khodadadi
- Department of Immunology and Cancer, Petroleum Pollutants Research Center, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Vahid Bayati
- Department of Anatomical Sciences, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Sadegh Saremy
- Cell and Molecular Research Center, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Maryam Farasat
- Department of Anatomical Sciences, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
| | - Layasadat Khorsandi
- Cell and Molecular Research Center, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran ; Department of Anatomical Sciences, Faculty of Medicine, Ahvaz Jundishapur University of Medical Sciences, Ahvaz, Iran
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