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van Rixel VHS, Busemann A, Wissingh MF, Hopkins SL, Siewert B, van de Griend C, Siegler MA, Marzo T, Papi F, Ferraroni M, Gratteri P, Bazzicalupi C, Messori L, Bonnet S. Induction of a Four‐Way Junction Structure in the DNA Palindromic Hexanucleotide 5′‐d(CGTACG)‐3′ by a Mononuclear Platinum Complex. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201814532] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Vincent H. S. van Rixel
- Leiden Institute of ChemistryLeiden University Einsteinweg 55, PO Box 9502 2333CC Leiden The Netherlands
| | - Anja Busemann
- Leiden Institute of ChemistryLeiden University Einsteinweg 55, PO Box 9502 2333CC Leiden The Netherlands
| | - Mathijs F. Wissingh
- Leiden Institute of ChemistryLeiden University Einsteinweg 55, PO Box 9502 2333CC Leiden The Netherlands
| | - Samantha L. Hopkins
- Leiden Institute of ChemistryLeiden University Einsteinweg 55, PO Box 9502 2333CC Leiden The Netherlands
| | - Bianka Siewert
- Leiden Institute of ChemistryLeiden University Einsteinweg 55, PO Box 9502 2333CC Leiden The Netherlands
| | - Corjan van de Griend
- Leiden Institute of ChemistryLeiden University Einsteinweg 55, PO Box 9502 2333CC Leiden The Netherlands
| | | | - Tiziano Marzo
- Department of PharmacyUniversity of Pisa Via Bonanno Pisano 6 56126 Pisa Italy
| | - Francesco Papi
- Department of ChemistryUniversity of Florence Via della Lastruccia 3 50019 Sesto Fiorentino (FI) Italy
| | - Marta Ferraroni
- Department of ChemistryUniversity of Florence Via della Lastruccia 3 50019 Sesto Fiorentino (FI) Italy
| | - Paola Gratteri
- Department NEUROFARBA—Pharmaceutical and Nutraceutical sectionLaboratory of Molecular Modeling Cheminformatics and QSARUniversity of Florence Via Ugo Schiff 6 50019 Sesto Fiorentino (FI) Italy
| | - Carla Bazzicalupi
- Department of ChemistryUniversity of Florence Via della Lastruccia 3 50019 Sesto Fiorentino (FI) Italy
| | - Luigi Messori
- Department of Chemistry “Ugo Schiff”University of Florence Italy
| | - Sylvestre Bonnet
- Leiden Institute of ChemistryLeiden University Einsteinweg 55, PO Box 9502 2333CC Leiden The Netherlands
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van Rixel VHS, Busemann A, Wissingh MF, Hopkins SL, Siewert B, van de Griend C, Siegler MA, Marzo T, Papi F, Ferraroni M, Gratteri P, Bazzicalupi C, Messori L, Bonnet S. Induction of a Four-Way Junction Structure in the DNA Palindromic Hexanucleotide 5'-d(CGTACG)-3' by a Mononuclear Platinum Complex. Angew Chem Int Ed Engl 2019; 58:9378-9382. [PMID: 31046177 PMCID: PMC6618160 DOI: 10.1002/anie.201814532] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Indexed: 12/22/2022]
Abstract
Four-way junctions (4WJs) are supramolecular DNA assemblies comprising four interacting DNA strands that in biology are involved in DNA-damage repair. In this study, a new mononuclear platinum(II) complex 1 was prepared that is capable of driving the crystallization of the DNA oligomer 5'-d(CGTACG)-3' specifically into a 4WJ-like motif. In the crystal structure of the 1-CGTACG adduct, the distorted-square-planar platinum complex binds to the core of the 4WJ-like motif through π-π stacking and hydrogen bonding, without forming any platinum-nitrogen coordination bonds. Our observations suggest that the specific molecular properties of the metal complex are crucially responsible for triggering the selective assembly of this peculiar DNA superstructure.
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Affiliation(s)
- Vincent H S van Rixel
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, PO Box 9502, 2333CC, Leiden, The Netherlands
| | - Anja Busemann
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, PO Box 9502, 2333CC, Leiden, The Netherlands
| | - Mathijs F Wissingh
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, PO Box 9502, 2333CC, Leiden, The Netherlands
| | - Samantha L Hopkins
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, PO Box 9502, 2333CC, Leiden, The Netherlands
| | - Bianka Siewert
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, PO Box 9502, 2333CC, Leiden, The Netherlands
| | - Corjan van de Griend
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, PO Box 9502, 2333CC, Leiden, The Netherlands
| | | | - Tiziano Marzo
- Department of Pharmacy, University of Pisa, Via Bonanno Pisano 6, 56126, Pisa, Italy
| | - Francesco Papi
- Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino (FI), Italy
| | - Marta Ferraroni
- Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino (FI), Italy
| | - Paola Gratteri
- Department NEUROFARBA-Pharmaceutical and Nutraceutical section, Laboratory of Molecular Modeling Cheminformatics and QSAR, University of Florence, Via Ugo Schiff 6, 50019, Sesto Fiorentino (FI), Italy
| | - Carla Bazzicalupi
- Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino (FI), Italy
| | - Luigi Messori
- Department of Chemistry "Ugo Schiff", University of Florence, Italy
| | - Sylvestre Bonnet
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, PO Box 9502, 2333CC, Leiden, The Netherlands
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