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Regney M, Kraberger S, Custer JM, Crane AE, Shero MR, Beltran RS, Kirkham AL, Van Doorslaer K, Stone AC, Goebel ME, Burns JM, Varsani A. Diverse papillomaviruses identified from Antarctic fur seals, leopard seals and Weddell seals from the Antarctic. Virology 2024; 594:110064. [PMID: 38522135 DOI: 10.1016/j.virol.2024.110064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 03/09/2024] [Accepted: 03/14/2024] [Indexed: 03/26/2024]
Abstract
Papillomaviruses (family Papillomaviridae) are non-enveloped, circular, double-stranded DNA viruses known to infect squamous and mucosal epithelial cells. In the family Papillomaviridae there are 53 genera and 133 viral species whose members infect a variety of mammalian, avian, reptilian, and fish species. Within the Antarctic context, papillomaviruses (PVs) have been identified in Adélie penguins (Pygoscelis adeliae, 2 PVs), Weddell seals (Leptonychotes weddellii, 7 PVs), and emerald notothen (Trematomus bernacchii, 1 PV) in McMurdo Sound and Ross Island in eastern Antarctica. Here we identified 13 diverse PVs from buccal swabs of Antarctic fur seals (Arctocephalus gazella, 2 PVs) and leopard seal (Hydrurga leptonyx, 3 PVs) in western Antarctica (Antarctic Peninsula), and vaginal and nasal swabs of Weddell seals (8 PVs) in McMurdo Sound. These PV genomes group into four genera representing 11 new papillomavirus types, of which five are from two Antarctic fur seals and a leopard seal and six from Weddell seals.
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Affiliation(s)
- Melanie Regney
- School of Life Sciences, Arizona State University, Tempe, AZ, 85287, United States; The Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, 85287, United States
| | - Simona Kraberger
- The Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, 85287, United States; Center for Evolution and Medicine, Arizona State University, Tempe, AZ, 85287, United States
| | - Joy M Custer
- The Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, 85287, United States; Center for Evolution and Medicine, Arizona State University, Tempe, AZ, 85287, United States
| | - Adele E Crane
- School of Life Sciences, Arizona State University, Tempe, AZ, 85287, United States
| | - Michelle R Shero
- Biology Department, Woods Hole Oceanographic Institution, 266 Woods Hole Rd, Woods Hole, MA, 02543, United States
| | - Roxanne S Beltran
- Department of Ecology and Evolutionary Biology, University of California Santa Cruz, 130 McAllister Way, Santa Cruz, CA, 95060, United States
| | - Amy L Kirkham
- U.S. Fish and Wildlife Service, Marine Mammals Management, 1011 E. Tudor Road, Anchorage, AK, 99503, United States
| | - Koenraad Van Doorslaer
- Department of Immunobiology, UA Cancer Center, The BIO5 Institute, University of Arizona, Tucson, AZ, 85724, United States
| | - Anne C Stone
- Center for Evolution and Medicine, Arizona State University, Tempe, AZ, 85287, United States; School of Human Evolution and Social Change, Arizona State University, Tempe, AZ, 85287, United States
| | - Michael E Goebel
- Department of Ecology and Evolutionary Biology, University of California-Santa Cruz, Santa Cruz, CA, United States
| | - Jennifer M Burns
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, United States
| | - Arvind Varsani
- School of Life Sciences, Arizona State University, Tempe, AZ, 85287, United States; The Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, 85287, United States; Center for Evolution and Medicine, Arizona State University, Tempe, AZ, 85287, United States; Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, 7925 Cape Town, South Africa.
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Paietta EN, Kraberger S, Regney M, Custer JM, Ehmke E, Yoder AD, Varsani A. Interspecies Papillomavirus Type Infection and a Novel Papillomavirus Type in Red Ruffed Lemurs ( Varecia rubra). Viruses 2023; 16:37. [PMID: 38257737 PMCID: PMC10818365 DOI: 10.3390/v16010037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 12/16/2023] [Accepted: 12/20/2023] [Indexed: 01/24/2024] Open
Abstract
The Papillomaviridae are a family of vertebrate-infecting viruses of oncogenic potential generally thought to be host species- and tissue-specific. Despite their phylogenetic relatedness to humans, there is a scarcity of data on papillomaviruses (PVs) in speciose non-human primate lineages, particularly the lemuriform primates. Varecia variegata (black-and-white ruffed lemurs) and Varecia rubra (red ruffed lemurs), two closely related species comprising the Varecia genus, are critically endangered with large global captive populations. Varecia variegata papillomavirus (VavPV) types -1 and -2, the first PVs in lemurs with a fully identified genome, were previously characterized from captive V. variegata saliva. To build upon this discovery, saliva samples were collected from captive V. rubra with the following aims: (1) to identify PVs shared between V. variegata and V. rubra and (2) to characterize novel PVs in V. rubra to better understand PV diversity in the lemuriform primates. Three complete PV genomes were determined from V. rubra samples. Two of these PV genomes share 98% L1 nucleotide identity with VavPV2, denoting interspecies infection of V. rubra by VavPV2. This work represents the first reported case of interspecies PV infection amongst the strepsirrhine primates. The third PV genome shares <68% L1 nucleotide identity with that of all PVs. Thus, it represents a new PV species and has been named Varecia rubra papillomavirus 1 (VarPV1). VavPV1, VavPV2, and VarPV1 form a new clade within the Papillomaviridae family, likely representing a novel genus. Future work diversifying sample collection (i.e., lemur host species from multiple genera, sample type, geographic location, and wild populations) is likely to uncover a world of diverse lemur PVs.
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Affiliation(s)
| | - Simona Kraberger
- The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA; (S.K.); (M.R.); (J.M.C.)
| | - Melanie Regney
- The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA; (S.K.); (M.R.); (J.M.C.)
| | - Joy M. Custer
- The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA; (S.K.); (M.R.); (J.M.C.)
| | - Erin Ehmke
- Duke Lemur Center, Durham, NC 27705, USA;
| | - Anne D. Yoder
- Department of Biology, Duke University, Durham, NC 27708, USA;
| | - Arvind Varsani
- The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA; (S.K.); (M.R.); (J.M.C.)
- Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town 7925, South Africa
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