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Sugino S, Konno D, Kawai Y, Nagasaki M, Endo Y, Hayase T, Yamazaki-Higuchi M, Kumeta Y, Tachibana S, Saito K, Suzuki J, Kido K, Kurosawa N, Namiki A, Yamauchi M. Long non-coding RNA MIR4300HG polymorphisms are associated with postoperative nausea and vomiting: a genome-wide association study. Hum Genomics 2020; 14:31. [PMID: 32928300 PMCID: PMC7491086 DOI: 10.1186/s40246-020-00282-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 09/04/2020] [Indexed: 01/02/2023] Open
Abstract
Background Genetic factors such as single-nucleotide polymorphisms (SNPs) play a key role in the development of postoperative nausea and vomiting (PONV). However, previous findings are not widely applicable to different populations because of population-specific genetic variation. We developed a Japanese-specific DNA microarray for high-throughput genotyping. The aim of the current study was to identify SNPs associated with PONV on a genome-wide scale using this microarray in a sample of Japanese surgical patients. Methods Associations between 659,636 SNPs and the incidence of PONV 24 h after surgery in a limited sample of 24 female patients were assessed using the microarray. After imputation of genotypes at 24,330,529 SNPs, 78 SNPs were found to be associated with the incidence of PONV. We chose 4 of the 78 SNPs to focus on by in silico functional annotation. Finally, we genotyped these 4 candidate SNPs in 255 patients using real-time PCR to verify association with the incidence of PONV. Results The T > C variant of rs11232965 in the long non-coding RNA MIR4300HG was significantly associated with reduced incidence of PONV among genotypes and between alleles (p = 0.01 and 0.007). Conclusions We identified a novel SNP (rs11232965) in the long non-coding RNA MIR4300HG that is associated with PONV. The rs11232965-SNP variant (T > C) is protective against the incidence of PONV. Trial registration This study was registered at the UMIN Clinical Trials Registry (Identifier: UMIN000022903, date of registration: June 27, 2016, retrospectively registered.
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Affiliation(s)
- Shigekazu Sugino
- Department of Anesthesiology and Perioperative Medicine, Tohoku University School of Medicine, Seiryo-machi 2-1, Sendai, Miyagi, 980-8575, Japan. .,Department of Anesthesia, Otaru General Hospital, Wakamatsu 1, Otaru, Hokakido, 047-8550, Japan.
| | - Daisuke Konno
- Department of Anesthesiology and Perioperative Medicine, Tohoku University School of Medicine, Seiryo-machi 2-1, Sendai, Miyagi, 980-8575, Japan
| | - Yosuke Kawai
- Department of Integrative Genomics, Tohoku University Tohoku Medical Megabank Organization, Seiryo-machi 2-1, Sendai, Miyagi, 980-8575, Japan
| | - Masao Nagasaki
- Department of Integrative Genomics, Tohoku University Tohoku Medical Megabank Organization, Seiryo-machi 2-1, Sendai, Miyagi, 980-8575, Japan
| | - Yasuhiro Endo
- Department of Anesthesiology and Perioperative Medicine, Tohoku University School of Medicine, Seiryo-machi 2-1, Sendai, Miyagi, 980-8575, Japan
| | - Tomo Hayase
- Department of Anesthesia, Otaru General Hospital, Wakamatsu 1, Otaru, Hokakido, 047-8550, Japan
| | - Misako Yamazaki-Higuchi
- Department of Anesthesia, Otaru General Hospital, Wakamatsu 1, Otaru, Hokakido, 047-8550, Japan
| | - Yukihiro Kumeta
- Department of Anesthesia, Otaru General Hospital, Wakamatsu 1, Otaru, Hokakido, 047-8550, Japan
| | - Shunsuke Tachibana
- Department of Anesthesia, Otaru General Hospital, Wakamatsu 1, Otaru, Hokakido, 047-8550, Japan
| | - Katsuhiko Saito
- Department of Pharmacy, Hokkaido Pharmaceutical University School of Pharmacy, Maeda 7-15, Sapporo, Hokakido, 006-8590, Japan
| | - Jun Suzuki
- Department of Anesthesiology and Perioperative Medicine, Tohoku University School of Medicine, Seiryo-machi 2-1, Sendai, Miyagi, 980-8575, Japan
| | - Kanta Kido
- Department of Anesthesiology, Kanagawa Dental University Graduate School of Dentistry, Inaoka 82, Yokosuka, Kanagawa, 238-8580, Japan
| | - Nahoko Kurosawa
- Department of Pharmacy, Hokkaido Pharmaceutical University School of Pharmacy, Maeda 7-15, Sapporo, Hokakido, 006-8590, Japan
| | - Akiyoshi Namiki
- Hospital Administrator, Otaru General Hospital, Wakamatsu 1, Otaru, Hokakido, 047-8550, Japan
| | - Masanori Yamauchi
- Department of Anesthesiology and Perioperative Medicine, Tohoku University School of Medicine, Seiryo-machi 2-1, Sendai, Miyagi, 980-8575, Japan
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