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Ghasemi S, Naderi Saffar K, Ebrahimi F, Khatami P, Monazah A, Alizadeh GA, Ettehadi HA, Rad I, Nojehdehi S, Kehtari M, Kouhkan F, Barjasteh H, Moradi S, Ghorbani MH, Khodaie A, Papizadeh M, Najafi R, Naghneh E, Sadeghi D, Karimi Rahjerdi A. Development of Inactivated FAKHRAVAC ® Vaccine against SARS-CoV-2 Virus: Preclinical Study in Animal Models. Vaccines (Basel) 2021; 9:vaccines9111271. [PMID: 34835202 PMCID: PMC8622747 DOI: 10.3390/vaccines9111271] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 10/21/2021] [Accepted: 10/28/2021] [Indexed: 11/29/2022] Open
Abstract
The recent viral infection disease pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has resulted in a global public health crisis. Iran, as one of the countries that reported over five million infected cases by September 2021, has been concerned with the urgent development of effective vaccines against SARS-CoV-2. In this paper, we report the results of a study on potency and safety of an inactivated SARS-CoV-2 vaccine candidate (FAKHRAVAC) in a preclinical study so as to confirm its potential for further clinical evaluation. Here, we developed a pilot-scale production of FAKHRAVAC, a purified inactivated SARS-CoV-2 virus vaccine candidate that induces neutralizing antibodies in Balb/c mice, guinea pigs, rabbits, and non-human primates (Rhesus macaques—RM). After obtaining ethical code of IR.IUMS.REC.1399.566, immunizations of animals were conducted by using either of three different vaccine dilutions; High (H): 10 μg/dose, Medium (M): 5 μg/dose, and Low (L): 1 μg/dose, respectively. In the process of screening for viral seeds, viral strains that resulted in the most severe clinical manifestation in patients have been isolated for vaccine development. The viral seed produced the optimal immunity against SARS-CoV-2 virus, which suggests a possible broader neutralizing ability against SARS-CoV-2 strains. The seroconversion rate at the H-, M-, and L-dose groups of all tested animals reached 100% by 28 days after immunization. These data support the eligibility of FAKHRAVAC vaccine candidate for further evaluation in a clinical trial.
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Affiliation(s)
- Soheil Ghasemi
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Kosar Naderi Saffar
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
- Stem Cell Technology Research Center (STRC), Building No. 9, 2nd East Alley, Mohammad-Ali Keshavarz Blvd., Saadat Abad, Tehran 1997775555, Iran; (I.R.); (S.N.); (M.K.); (F.K.)
| | - Firooz Ebrahimi
- Department of Biology, Faculty of Basic Sciences, Imam Hussein University, Tehran 1698715461, Iran; (F.E.); (D.S.)
| | - Pezhman Khatami
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Arina Monazah
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Ghorban-Ali Alizadeh
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Hossein-Ali Ettehadi
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Iman Rad
- Stem Cell Technology Research Center (STRC), Building No. 9, 2nd East Alley, Mohammad-Ali Keshavarz Blvd., Saadat Abad, Tehran 1997775555, Iran; (I.R.); (S.N.); (M.K.); (F.K.)
| | - Shahrzad Nojehdehi
- Stem Cell Technology Research Center (STRC), Building No. 9, 2nd East Alley, Mohammad-Ali Keshavarz Blvd., Saadat Abad, Tehran 1997775555, Iran; (I.R.); (S.N.); (M.K.); (F.K.)
| | - Mousa Kehtari
- Stem Cell Technology Research Center (STRC), Building No. 9, 2nd East Alley, Mohammad-Ali Keshavarz Blvd., Saadat Abad, Tehran 1997775555, Iran; (I.R.); (S.N.); (M.K.); (F.K.)
| | - Fatemeh Kouhkan
- Stem Cell Technology Research Center (STRC), Building No. 9, 2nd East Alley, Mohammad-Ali Keshavarz Blvd., Saadat Abad, Tehran 1997775555, Iran; (I.R.); (S.N.); (M.K.); (F.K.)
| | - Hesam Barjasteh
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Sohrab Moradi
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Mohammad-Hosein Ghorbani
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Ali Khodaie
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Moslem Papizadeh
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Roghayeh Najafi
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Ehsan Naghneh
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
| | - Davood Sadeghi
- Department of Biology, Faculty of Basic Sciences, Imam Hussein University, Tehran 1698715461, Iran; (F.E.); (D.S.)
| | - Ahmad Karimi Rahjerdi
- Milad Daro Noor Pharmaceutical (MDNP) Company, Unit 3, Mirsharifi Alley, Valiasr Street, Tehran 1986936914, Iran; (S.G.); (K.N.S.); (P.K.); (A.M.); (G.-A.A.); (H.-A.E.); (H.B.); (S.M.); (M.-H.G.); (A.K.); (M.P.); (R.N.); (E.N.)
- Stem Cell Technology Research Center (STRC), Building No. 9, 2nd East Alley, Mohammad-Ali Keshavarz Blvd., Saadat Abad, Tehran 1997775555, Iran; (I.R.); (S.N.); (M.K.); (F.K.)
- Correspondence: or
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Noohi N, Papizadeh M, Rohani M, Talebi M, Pourshafie MR. Screening for probiotic characters in lactobacilli isolated from chickens revealed the intra-species diversity of Lactobacillus brevis. Anim Nutr 2021; 7:119-126. [PMID: 33997339 PMCID: PMC8110883 DOI: 10.1016/j.aninu.2020.07.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2019] [Revised: 06/21/2020] [Accepted: 07/12/2020] [Indexed: 11/24/2022]
Abstract
Considering the importance of the poultry industry and the increasing interest in alternative growth promoters, probiotics are considered as a potential candidate for use in the poultry industry. In this study, Lactobacillus species were isolated from 21 rectal swabs of 11 healthy 6-day-old and 10 healthy 21-day-old chickens and their fecal and feed samples. The isolates were characterized and their probiotic characteristics, including resistance to gastric acid and bile salts, biofilm formation and adherence to epithelium or mucus, amylase and protease activity and production of inhibitory compounds, were assessed. From 31 acid and bile resistant lactobacilli, only 2 Lactobacillus brevis and 1 Lactobacillus reuteri strains showed significant probiotic properties. These isolates indicated detectable attachment to Caco-2 cells and significant antibacterial activities against Gram-positive and Gram-negative pathogens. Additionally, phenotypic and genotypic diversity of lactobacilli isolates were studied by Phene Plate (PhP) system (PhP-LB) and random amplified polymorphic DNA (RAPD)-PCR, respectively. PhP-LB results of 24 L. brevis isolates showed a high phenotypic variation among the isolates. In comparison, results of RAPD-PCR highlighted a low diversity. Therefore, it seems that combination of the 2 techniques (PhP and RAPD-PCR) could result in a significant discriminatory power than each of them used alone.
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Affiliation(s)
- Nasrin Noohi
- Research Center for Conservation of Cultural Relics, Research Center of Iranian Cultural Heritage and Tourism Organization, Tehran, Iran
| | - Moslem Papizadeh
- Department of Microbiology, Pasteur Institute of Iran, Tehran, Iran
| | - Mahdi Rohani
- Department of Microbiology, Pasteur Institute of Iran, Tehran, Iran
| | - Malihe Talebi
- Department of Microbiology, School of Medicine, Iran University of Medical Sciences, Tehran, Iran
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Papizadeh M, Rohani M, Nahrevanian H, Hosseini SN, Shojaosadati SA, Pourshafie MR. Using Various Approaches of Design of Experiments for High Cell Density Production of the Functionally Probiotic Lactobacillus plantarum Strain RPR42 in a Cane Molasses-based Medium. Curr Microbiol 2020; 77:1756-1766. [PMID: 32328749 DOI: 10.1007/s00284-020-01979-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Accepted: 03/31/2020] [Indexed: 10/24/2022]
Abstract
Considering the economic importance of the probiotics, industrial production of their biomass became important. Cane molasses, as an industrial byproduct, was used in this study to design a medium for biomass overproduction of a functionally probiotic strain, designated as Lactobacillus plantarum strain RPR42. The results showed that strain RPR42 can be best grown anaerobically in 22.5% cane molasses solution. Also, the findings of the single variable at a time experiments and either factorial design indicated that the optimal growth of strain RPR42 can be observed when beef extract, casein hydrolysate, and yeast extract were added into the medium. The central composite design experiments suggested a medium which was designated as cane molasses medium (CMM). Eventually, this medium contained 21.9% cane molasses, 30.72 g/L of a combined mixture of nitrogenous compounds: 0.0754% of a 1:1:1 mixture of polysorbates 20, 60, and 80, and 18.53 gr/L of the combined minerals. Such an optimized cane molasses-based medium supported a significant biomass production since a considerably high cell density, 13.8 g/L/24 h of dry biomass, of the strain was produced. Hence, cane molasses can be regarded as a promising substrate for industrial production purposes.
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Affiliation(s)
- Moslem Papizadeh
- Department of Microbiology, Pasteur Institute of Iran, Tehran, Iran
| | - Mahdi Rohani
- Department of Microbiology, Pasteur Institute of Iran, Tehran, Iran
| | | | - Seyed Nezamedin Hosseini
- Department of Recombinant Hepatitis B Vaccine, Production and Research Complex, Pasteur Institute of Iran, Tehran, Iran
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Papizadeh M, Rohani M, Hosseini SN, Shojaosadati SA, Nahrevanian H, Talebi M, Pourshafie MR. Screening for efficient nitrogen sources for overproduction of the biomass of the functionally probiotic L. plantarum strain RPR42 in a cane molasses-based medium. AMB Express 2020; 10:53. [PMID: 32185601 PMCID: PMC7078425 DOI: 10.1186/s13568-020-00976-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Accepted: 02/26/2020] [Indexed: 11/10/2022] Open
Abstract
Nitrogen source has a vital role for the efficient growth of lactobacilli. The effects of cheese whey, corn steep liquor, and wheat germ extract on the growth of L. plantarum strain RPR42 in cane molasses-based media was evaluated using various approaches of design of experiments. Our results showed that such protein-rich agricultural by-products significantly increase the biomass production of the strain RPR42 in cane molasses-based media. The most affecting nitrogenous material was cheese whey followed by CSL and the minor effect was reported for wheat germ extract as revealed in factorial and Box–Behnken design experiments. The replacement of costly beef extract and yeast extract with a defined mixtures of the above nitrogenous agricultural by-products in cane molasses-based medium led to production of up to 12.64 g/L/24 h of dry biomass of strain RPR42. A detectable cell density of strain RPR42 (~ 9.81 × 109 CFU/mL 24 h) which was observed in such an economic medium showed that the large-scale production of the strain RPR42 tend to be feasible at significantly low costs.
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Wijayawardene NN, Pawłowska J, Letcher PM, Kirk PM, Humber RA, Schüßler A, Wrzosek M, Muszewska A, Okrasińska A, Istel Ł, Gęsiorska A, Mungai P, Lateef AA, Rajeshkumar KC, Singh RV, Radek R, Walther G, Wagner L, Walker C, Wijesundara DSA, Papizadeh M, Dolatabadi S, Shenoy BD, Tokarev YS, Lumyong S, Hyde KD. Notes for genera: basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota). FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0409-5] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Rohani M, Papizadeh M, Pourshafie MR. Correlation of Biofilm Formation and Caco-2 Cell Attachment Properties in Colonization Ability of Acid-Bile Resistant Fecal Lactobacillus plantarum Isolates. JoMMID 2018. [DOI: 10.29252/jommid.6.1.13] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
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Papizadeh M, van Diepeningen AD, Zamanizadeh HR, Saba F, Ramezani H. Fusarium ershadii sp. nov., a Pathogen on Asparagus officinalis and Musa acuminata. Eur J Plant Pathol 2018; 151:689-701. [PMID: 31007392 PMCID: PMC6445495 DOI: 10.1007/s10658-017-1403-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 12/14/2017] [Indexed: 05/16/2023]
Abstract
Two Fusarium strains, isolated from Asparagus in Italy and Musa in Vietnam respectively, proved to be members of an undescribed clade within the Fusarium solani species complex based on phylogenetic species recognition on ITS, partial RPB2 and EF-1α gene fragments. Macro- and micro-morphological investigations followed with physiological studies done on this new species: Fusarium ershadii sp. nov can be distinguished by its conidial morphology. Both isolates of Fusarium ershadii were shown to be pathogenic to the monocot Asparagus officinalis when inoculated on roots and induced hollow root symptoms within two weeks in Asparagus officinalis seedlings. In comparison mild disease symptoms were observed by the same strains on Musa acuminata seedlings.
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Affiliation(s)
- Moslem Papizadeh
- Microorganisms Bank, Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture and Research (ACECR), Tehran, Iran
| | - Anne D. van Diepeningen
- CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584CT, Utrecht, The Netherlands
- BU Biointeractions and Plant Health, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands
| | - Hamid Reza Zamanizadeh
- Department of Plant Pathology, College of Agriculture, Science and Research Branch, Islamic Azad University, Tehran, Iran
| | - Farkhondeh Saba
- Microorganisms Bank, Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture and Research (ACECR), Tehran, Iran
| | - Hossein Ramezani
- Plants Bank, Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture and Research (ACECR), Tehran, Iran
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Papizadeh M, Wijayawardene NN, Amoozegar MA, Saba F, Fazeli SAS, Hyde KD. Neocamarosporium jorjanensis, N. persepolisi, and N. solicola spp. nov. (Neocamarosporiaceae, Pleosporales) isolated from saline lakes of Iran indicate the possible halotolerant nature for the genus. Mycol Prog 2017. [DOI: 10.1007/s11557-017-1341-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Papizadeh M, Rohani M, Nahrevanian H, Javadi A, Pourshafie MR. Probiotic characters of Bifidobacterium and Lactobacillus are a result of the ongoing gene acquisition and genome minimization evolutionary trends. Microb Pathog 2017; 111:118-131. [DOI: 10.1016/j.micpath.2017.08.021] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2017] [Revised: 08/12/2017] [Accepted: 08/16/2017] [Indexed: 02/07/2023]
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Hyde KD, Hongsanan S, Jeewon R, Bhat DJ, McKenzie EHC, Jones EBG, Phookamsak R, Ariyawansa HA, Boonmee S, Zhao Q, Abdel-Aziz FA, Abdel-Wahab MA, Banmai S, Chomnunti P, Cui BK, Daranagama DA, Das K, Dayarathne MC, de Silva NI, Dissanayake AJ, Doilom M, Ekanayaka AH, Gibertoni TB, Góes-Neto A, Huang SK, Jayasiri SC, Jayawardena RS, Konta S, Lee HB, Li WJ, Lin CG, Liu JK, Lu YZ, Luo ZL, Manawasinghe IS, Manimohan P, Mapook A, Niskanen T, Norphanphoun C, Papizadeh M, Perera RH, Phukhamsakda C, Richter C, de A. Santiago ALCM, Drechsler-Santos ER, Senanayake IC, Tanaka K, Tennakoon TMDS, Thambugala KM, Tian Q, Tibpromma S, Thongbai B, Vizzini A, Wanasinghe DN, Wijayawardene NN, Wu HX, Yang J, Zeng XY, Zhang H, Zhang JF, Bulgakov TS, Camporesi E, Bahkali AH, Amoozegar MA, Araujo-Neta LS, Ammirati JF, Baghela A, Bhatt RP, Bojantchev D, Buyck B, da Silva GA, de Lima CLF, de Oliveira RJV, de Souza CAF, Dai YC, Dima B, Duong TT, Ercole E, Mafalda-Freire F, Ghosh A, Hashimoto A, Kamolhan S, Kang JC, Karunarathna SC, Kirk PM, Kytövuori I, Lantieri A, Liimatainen K, Liu ZY, Liu XZ, Lücking R, Medardi G, Mortimer PE, Nguyen TTT, Promputtha I, Raj KNA, Reck MA, Lumyong S, Shahzadeh-Fazeli SA, Stadler M, Soudi MR, Su HY, Takahashi T, Tangthirasunun N, Uniyal P, Wang Y, Wen TC, Xu JC, Zhang ZK, Zhao YC, Zhou JL, Zhu L. Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. FUNGAL DIVERS 2016. [DOI: 10.1007/s13225-016-0373-x] [Citation(s) in RCA: 202] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Wijayawardene NN, Hyde KD, Wanasinghe DN, Papizadeh M, Goonasekara ID, Camporesi E, Bhat DJ, McKenzie EHC, Phillips AJL, Diederich P, Tanaka K, Li WJ, Tangthirasunun N, Phookamsak R, Dai DQ, Dissanayake AJ, Weerakoon G, Maharachchikumbura SSN, Hashimoto A, Matsumura M, Bahkali AH, Wang Y. Taxonomy and phylogeny of dematiaceous coelomycetes. FUNGAL DIVERS 2016. [DOI: 10.1007/s13225-016-0360-2] [Citation(s) in RCA: 99] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Crous P, Wingfield M, Schumacher R, Summerell B, Giraldo A, Gené J, Guarro J, Wanasinghe D, Hyde K, Camporesi E, Gareth Jones E, Thambugala K, Malysheva E, Malysheva V, Acharya K, Álvarez J, Alvarado P, Assefa A, Barnes C, Bartlett J, Blanchette R, Burgess T, Carlavilla J, Coetzee M, Damm U, Decock C, den Breeÿen A, de Vries B, Dutta A, Holdom D, Rooney-Latham S, Manjón J, Marincowitz S, Mirabolfathy M, Moreno G, Nakashima C, Papizadeh M, Shahzadeh Fazeli S, Amoozegar M, Romberg M, Shivas R, Stalpers J, Stielow B, Stukely M, Swart W, Tan Y, van der Bank M, Wood A, Zhang Y, Groenewald J. Fungal Planet description sheets: 281-319. Persoonia 2014; 33:212-89. [PMID: 25737601 PMCID: PMC4312934 DOI: 10.3767/003158514x685680] [Citation(s) in RCA: 116] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2014] [Accepted: 10/18/2014] [Indexed: 11/25/2022]
Abstract
Novel species of fungi described in the present study include the following from South Africa: Alanphillipsia aloeicola from Aloe sp., Arxiella dolichandrae from Dolichandra unguiscati, Ganoderma austroafricanum from Jacaranda mimosifolia, Phacidiella podocarpi and Phaeosphaeria podocarpi from Podocarpus latifolius, Phyllosticta mimusopisicola from Mimusops zeyheri and Sphaerulina pelargonii from Pelargonium sp. Furthermore, Barssia maroccana is described from Cedrus atlantica (Morocco), Codinaea pini from Pinus patula (Uganda), Crucellisporiopsis marquesiae from Marquesia acuminata (Zambia), Dinemasporium ipomoeae from Ipomoea pes-caprae (Vietnam), Diaporthe phragmitis from Phragmites australis (China), Marasmius vladimirii from leaf litter (India), Melanconium hedericola from Hedera helix (Spain), Pluteus albotomentosus and Pluteus extremiorientalis from a mixed forest (Russia), Rachicladosporium eucalypti from Eucalyptus globulus (Ethiopia), Sistotrema epiphyllum from dead leaves of Fagus sylvatica in a forest (The Netherlands), Stagonospora chrysopyla from Scirpus microcarpus (USA) and Trichomerium dioscoreae from Dioscorea sp. (Japan). Novel species from Australia include: Corynespora endiandrae from Endiandra introrsa, Gonatophragmium triuniae from Triunia youngiana, Penicillium coccotrypicola from Archontophoenix cunninghamiana and Phytophthora moyootj from soil. Novelties from Iran include Neocamarosporium chichastianum from soil and Seimatosporium pistaciae from Pistacia vera. Xenosonderhenia eucalypti and Zasmidium eucalyptigenum are newly described from Eucalyptus urophylla in Indonesia. Diaporthe acaciarum and Roussoella acacia are newly described from Acacia tortilis in Tanzania. New species from Italy include Comoclathris spartii from Spartium junceum and Phoma tamaricicola from Tamarix gallica. Novel genera include (Ascomycetes): Acremoniopsis from forest soil and Collarina from water sediments (Spain), Phellinocrescentia from a Phellinus sp. (French Guiana), Neobambusicola from Strelitzia nicolai (South Africa), Neocladophialophora from Quercus robur (Germany), Neophysalospora from Corymbia henryi (Mozambique) and Xenophaeosphaeria from Grewia sp. (Tanzania). Morphological and culture characteristics along with ITS DNA barcodes are provided for all taxa.
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Affiliation(s)
- P.W. Crous
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - M.J. Wingfield
- Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Pretoria, 0028, South Africa
| | | | - B.A. Summerell
- Royal Botanic Gardens and Domain Trust, Mrs. Macquaries Road, Sydney, NSW 2000, Australia
| | - A. Giraldo
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - J. Gené
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - J. Guarro
- Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili (URV), Sant Llorenç 21, 43201 Reus, Tarragona, Spain
| | - D.N. Wanasinghe
- World Agro forestry Centre East and Central Asia Ofӿce, 132 Lanhei Road, Kunming 650201, China
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science,Kunming 650201, Yunnan China
- Institute of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - K.D. Hyde
- World Agro forestry Centre East and Central Asia Ofӿce, 132 Lanhei Road, Kunming 650201, China
- Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science,Kunming 650201, Yunnan China
- Institute of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
| | - E. Camporesi
- A.M.B. Gruppo Micologico Forlivese ‘Antonio Cicognani’, Via Roma 18, Forlì, Italy and A.M.B. Circolo Micologico ‘Giovanni Carini’,C.P.314,Brescia, Italy
- Società per gli Studi Naturalisticidella Romagna, C.P. 144, Bagnacavallo (RA), Italy
| | - E.B. Gareth Jones
- Department of Botany and Microbiology, College of Science, King Saudi University, Riyadh, Saudi Arabia
| | - K.M. Thambugala
- Institute of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand
- Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Xiaohe District, Guiyang City, Guizhou Province 550006, People’s Republic of China
| | - E.F. Malysheva
- Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov St. 2, RUS-197376, Saint Petersburg, Russia
| | - V.F. Malysheva
- Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov St. 2, RUS-197376, Saint Petersburg, Russia
| | - K. Acharya
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700019, West Bengal, India
| | - J. Álvarez
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - P. Alvarado
- ALVALAB, La Rochela 47, E-39012, Santander, Spain
| | - A. Assefa
- Department of Biology, Madawalabu University, P.O. Box 247, Bale Robe, Ethiopia
| | - C.W. Barnes
- Centro de Investigación, Estudios y Desarrollo de Ingeniería (CIEDI), Facultad de Ingenierías y Ciencias Agropecuarias (FICA), Universidad de Las Américas, Calle José Queri s/n entre Av. Granados y Av. Eloy Alfaro, Quito, Ecuador
| | - J.S. Bartlett
- Biosecurity Queensland, Ecosciences Precinct, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia
| | - R.A. Blanchette
- University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108, USA
| | - T.I. Burgess
- Centre for Phytophthora Science and Management, Murdoch University, 90 South Street, Murdoch, WA 6150, Australia
| | - J.R. Carlavilla
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - M.P.A. Coetzee
- Department of Genetics, Centre of Excellence in Tree Health Biotechnology (CTHB), Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, P. Bag X20, Pretoria, 0028, South Africa
| | - U. Damm
- Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany
| | - C.A. Decock
- Mycothèque de l’Université catholique de Louvain (MUCL, BCCM), Earth and Life Institute – ELIM – Mycology, Université catholique de Louvain, Croix du Sud 2 bte L7.05.06, B-1348 Louvain-la-Neuve, Belgium
| | - A. den Breeÿen
- ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa
| | - B. de Vries
- Roerdomplaan 222, 7905 EL Hoogeveen, The Netherlands
| | - A.K. Dutta
- Molecular and Applied Mycology and Plant Pathology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700019, West Bengal, India
| | - D.G. Holdom
- Biosecurity Queensland, Ecosciences Precinct, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia
| | - S. Rooney-Latham
- California Department of Food and Agriculture, 3294 Meadowview Road, Sacramento, CA 95832, USA
| | - J.L. Manjón
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - S. Marincowitz
- Department of Genetics, Centre of Excellence in Tree Health Biotechnology (CTHB), Forestry and Agricultural Biotechnology Institute (FABI), Faculty of Natural and Agricultural Sciences, University of Pretoria, P. Bag X20, Pretoria, 0028, South Africa
| | - M. Mirabolfathy
- Iranian Research Institute of Plant Protection, Tehran, Iran
| | - G. Moreno
- Departamento de Ciencias de la Vida (Área de Botánica), Universidad de Alcalá, E-28805 Alcalá de Henares, Spain
| | - C. Nakashima
- Graduate School of Bioresources, Mie University, 1577 Kurima-machiya, Tsu, Mie 514-8507, Japan
| | - M. Papizadeh
- Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture & Research (ACECR) Tehran, Iran
| | - S.A. Shahzadeh Fazeli
- Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture & Research (ACECR) Tehran, Iran
| | - M.A. Amoozegar
- Iranian Biological Resource Center (IBRC), Academic Center for Education, Culture & Research (ACECR) Tehran, Iran
| | - M.K. Romberg
- USDA APHIS PPQ NIS, 10300 Baltimore Ave, Beltsville, MD 20705, USA
| | - R.G. Shivas
- Biosecurity Queensland, Ecosciences Precinct, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia
| | - J.A. Stalpers
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - B. Stielow
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
| | - M.J.C. Stukely
- Science Division, Department of Parks and Wildlife, Locked Bag 104, Bentley Delivery Centre, WA 6983, Australia
| | - W.J. Swart
- Department of Plant Sciences, University of the Free State, P.O. Box 339, Bloemfontein 9300, South Africa
| | - Y.P. Tan
- Biosecurity Queensland, Ecosciences Precinct, Department of Agriculture, Fisheries and Forestry, Dutton Park 4102, Queensland, Australia
| | - M. van der Bank
- Department of Botany and Plant Biotechnology, University of Johannesburg, P.O. Box 524, Auckland Park, 2006, South Africa
| | - A.R. Wood
- ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch 7599, South Africa
| | - Y. Zhang
- Institute of Microbiology, Beijing Forestry University, P.O. Box 61, Beijing 100083, PR China
| | - J.Z. Groenewald
- CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands
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Papizadeh M, Ardakani MR. Bio filtration of volatile sulphurous hydrocarbon-polluted air by hydrocarbon degrading pseudomonas nisoc-11. J Biotechnol 2010. [DOI: 10.1016/j.jbiotec.2010.09.023] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Papizadeh M, Ardakani MR, Ebrahimipour G, Motamedi H. Utilization of dibenzothiophene as sulfur source by Microbacterium sp. NISOC-06. World J Microbiol Biotechnol 2009; 26:1195-200. [PMID: 24026923 DOI: 10.1007/s11274-009-0288-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2009] [Accepted: 12/14/2009] [Indexed: 11/28/2022]
Abstract
Oil-polluted soils were sampled from National Iranian South Oil Company (NISOC) for isolation and screening of C-S and not C-C targeted Dibenzothiophene (DBT) degrading microorganisms. Microbacterium sp. NISOC-06, a C-S targeted DBT degrading bacterium, was selected and its desulfurization ability was studied in aqueous phase and water-gasoline biphasic systems. The 16srRNA gene was amplified using universal eubacteria-specific primers, PCR product was sequenced and the sequence of nearly 1,500 bp 16srDNA was studied. Based on Gas Chromatography results Microbacterium sp. NISOC-06 utilized 94.8% of 1 mM DBT during the 2 weeks of incubation. UV Spectrophotometry and biomass production measurements showed that the Microbacterium sp. NISOC-06 was not able to utilize DBT as a carbon source. There was no accumulation of phenolic compounds as Gibb's assay showed. Biomass production in a biphasic system for which DBT-enriched gasoline was used as the sulfur source indicated the capability of Microbacterium sp. NISOC-06 to desulfurize gasoline.
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Affiliation(s)
- Moslem Papizadeh
- Department of Biology, Faculty of Sciences, Shahid Chamran University, Ahvaz, Iran,
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