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KIM EOJIN, KIM HYUNJIN, YEO MINKYUNG, KIM CHULHWAN, KIM JOOYOUNG, PARK SUNGSOO, KIM HYUNSOO, CHAE YANGSEOK. Identification of a Novel Long Non-coding RNA, lnc-ATMIN-4:2, and its Clinicopathological and Prognostic Significance in Advanced Gastric Cancer. Cancer Genomics Proteomics 2022; 19:761-772. [PMID: 36316044 PMCID: PMC9620448 DOI: 10.21873/cgp.20358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 09/21/2022] [Accepted: 09/26/2022] [Indexed: 11/27/2022] Open
Abstract
BACKGROUND/AIM Long non-coding RNAs (lncRNAs) are emerging as significant regulators of gene expression and a novel promising biomarker for cancer diagnosis and prognosis. This study identified a novel, differentially expressed lncRNA in advanced gastric cancer (AGC), Inc-ATMIN-4:2, and evaluated its clinicopathological and prognostic significance. PATIENTS AND METHODS Whole transcriptome sequencing was performed to identify differentially expressed lncRNAs in AGC tissue samples. We also analyzed lnc-ATMIN-4:2 expression in 317 patients with AGC using RNA in situ hybridization. RESULTS High (>30 dots) lnc-ATMIN-4:2 expression significantly correlated with younger age, poorly differentiated histology, diffuse type, deeper invasion depth, perineural invasion, lymph node metastasis, and higher stage group. In addition, high lnc-ATMIN-4:2 expression was significantly associated with worse overall survival in patients with AGC. CONCLUSION This study elucidated the significance of lncRNAs in AGC and indicated the value of lnc-ATMIN-4:2 expression as a predictive biomarker for the overall survival of patients with AGC.
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Affiliation(s)
- EOJIN KIM
- Department of Pathology, Korea University College of Medicine, Seoul, Republic of Korea
| | - HYUNJIN KIM
- Pathology Center, Seegene Medical Foundation, Seoul, Republic of Korea
| | - MIN-KYUNG YEO
- Department of Pathology, Chungnam National University School of Medicine, Daejeon, Republic of Korea
| | - CHUL HWAN KIM
- Department of Pathology, Anam Hospital, Korea University College of Medicine, Seoul, Republic of Korea
| | - JOO YOUNG KIM
- Department of Pathology, Kangnam Sacred Heart Hospital, Hallym University College of Medicine, Seoul, Republic of Korea
| | - SUNGSOO PARK
- Division of Foregut Surgery, Korea University College of Medicine, Seoul, Republic of Korea
| | - HYUN-SOO KIM
- Department of Pathology and Translational Genomics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea
| | - YANG-SEOK CHAE
- Department of Pathology, Korea University College of Medicine, Seoul, Republic of Korea,Department of Pathology, Anam Hospital, Korea University College of Medicine, Seoul, Republic of Korea
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Kim G, Kim S, Oh M, Han J, PARK S, An S. LB775 Characterization of sensitive scalp in Korean females. J Invest Dermatol 2021. [DOI: 10.1016/j.jid.2021.07.041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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PARK S, Lee S, Kim Y, Lee Y, Kang M, Han K, Kim D. SAT-273 TUBERCULOSIS IN PRE-DIALYSIS CHRONIC KIDNEY DISEASE: A NATIONWIDE OBSERVATIONAL STUDY WITH A MATCHED CONTROL GROUP. Kidney Int Rep 2019. [DOI: 10.1016/j.ekir.2019.05.310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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PARK S, Hahm M, Na S, Chong G, Jeong S, Lee J, Kang M, Kim M, Kim J. PO-0829 MRI-based texture analysis of lymph node for predicting clinical outcome in cervical cancer patients. Radiother Oncol 2019. [DOI: 10.1016/s0167-8140(19)31249-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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HWANG KA, PARK S, AHN JH, NAM JH. Development of a standard protocol for quantitative polymerase chain reaction to detect adenovirus 36, which is associated with obesity. Acta Virol 2018; 62:350-359. [DOI: 10.4149/av_2018_402] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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LUO P, MORRISON I, DUDKIEWICZ A, TIEDE K, BOYES E, O’TOOLE P, PARK S, BOXALL A. Visualization and characterization of engineered nanoparticles in complex environmental and food matrices using atmospheric scanning electron microscopy. J Microsc 2013; 250:32-41. [DOI: 10.1111/jmi.12014] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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KIM C, RHO S, LEE N, LEE C, KIM N, PARK S, CHOI B, CHOI M. IOP lowering effect of low intensity ultrasound on experimental glaucoma model using microbeads in rats. Acta Ophthalmol 2012. [DOI: 10.1111/j.1755-3768.2012.f052.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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KIM C, RHO S, LEE N, LEE C, KIM N, PARK S, CHOI B. Experimental glaucoma model using polyurethane microbeads in rats. Acta Ophthalmol 2012. [DOI: 10.1111/j.1755-3768.2012.f049.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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KOOK K, PARK S, CHOI A. Pirfenidone inhibits the induction of COX-2 stimulated by IL-1β at a step of NF-κB DNA binding in orbital fibroblast. Acta Ophthalmol 2012. [DOI: 10.1111/j.1755-3768.2012.t002.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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KIM NK, KIM CY, CHOI MJ, RHO S, PARK S, CHOI BH. Effects of low intensity ultrasound (LIUS) on the macular degeneration model in vitro. Acta Ophthalmol 2012. [DOI: 10.1111/j.1755-3768.2012.f105.x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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LEE YJ, KIM JH, SOHN HJ, LEE J, JUNG SY, CHWAE YJ, KIM K, PARK S, SHIN HJ. Effects of immunization with the rNfa1 protein on experimental Naegleria fowleri-PAM mice. Parasite Immunol 2011; 33:382-9. [DOI: 10.1111/j.1365-3024.2011.01296.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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KIM J, CHUNG S, PARK S, PARK J, BYUN S, HWANG M, OH D, CHOI H, KIM M, BU Y. Enhancing effect of HT008-1 on cognitive function and quality of life in cognitively declined healthy adults: A randomized, double-blind, placebo-controlled, trial. Pharmacol Biochem Behav 2008; 90:517-24. [DOI: 10.1016/j.pbb.2008.03.033] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/30/2007] [Revised: 03/15/2008] [Accepted: 03/30/2008] [Indexed: 11/24/2022]
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KIM HK, KIM JE, HAM CK, LEE DS, PARK S, CHO HI. Prognostic value of platelet indices as determined by ADVIA 120 in patients suspected of having disseminated intravascular coagulation. Int J Lab Hematol 2008; 30:117-23. [DOI: 10.1111/j.1751-553x.2007.00904.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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SHIN B, DAVIS Y, KONG X, PARK S, LOCKEY R, MOHAPATRA S. SiRNA for Intercellular Adhesion Molecule-1 (ICAM-1) Decreases Infection of A549 Cells by Respiratory Syncytial Virus (RSV) and Human Rhinovirus (HRV)-16. J Allergy Clin Immunol 2008. [DOI: 10.1016/j.jaci.2007.12.1117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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KIM S, KIM T, SOHN J, YOON H, SHIN D, PARK S. The Fraction of Nitric Oxide and Influencing Factors among Healthy Young Adults in Korea. J Allergy Clin Immunol 2008. [DOI: 10.1016/j.jaci.2007.12.593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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PARK S, KITCHENS R, GRAYSON M. Single Non-Viral Antigen Exposure During a Paramyxoviral Respiratory Infection is Sufficient to Drive Specific IgE Production. J Allergy Clin Immunol 2008. [DOI: 10.1016/j.jaci.2007.12.555] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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KWON N, SHIM J, LEE Y, UH S, JUNG K, PARK S, LEE Y. Longitudinal Validation of the Asthma Control Test in Moderate Persistent Asthma. J Allergy Clin Immunol 2008. [DOI: 10.1016/j.jaci.2007.12.591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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LEE D, PARK S, YU C, IHM S, LEE K. Novel synthesis of a porous stainless steel-supported Knudsen membrane with remarkably high permeability. J Memb Sci 2007. [DOI: 10.1016/j.memsci.2007.06.054] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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LEE D, PARK S, KIM K, KIM S, LIM S, LEE J, CHOI D, LEE Y. 73: Comparison of effectiveness of stellate ganglion block between chronic tension headache and migraine patients. Reg Anesth Pain Med 2007. [DOI: 10.1016/j.rapm.2007.06.249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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PARK S, KANG S, JOHNSON C, AMINE K, THACKERAY M. Lithium–manganese–nickel-oxide electrodes with integrated layered–spinel structures for lithium batteries. Electrochem commun 2007. [DOI: 10.1016/j.elecom.2006.09.014] [Citation(s) in RCA: 167] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
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JUNG H, PARK S, SHIN C, PARK Y, HONG S. Comparative catalytic studies on the conversion of 1-butene and n-butane to isobutene over MCM-22 and ITQ-2 zeolites. J Catal 2007. [DOI: 10.1016/j.jcat.2006.09.015] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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HONG B, KO G, KIM S, KANG H, PARK S, LIM H, KIM J, EO S, KANG S, KO S. Ketamine increases the Intracellular Mg2+Concentration via MAP kinase Activation in Cardiac Myocytes. Life Sci 2006. [DOI: 10.1016/j.lfs.2006.09.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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CHOI J, PARK S, KIM S, YOON Y, LEE K, LEE Y, PARK J. 41Oral alprazolam attenuates stress responses to regional anesthesia and surgery. Reg Anesth Pain Med 2006. [DOI: 10.1016/j.rapm.2006.06.185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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SOON D, YUEN E, KOTHARE P, POO Y, PARK S, CHAN C, LINNEBJERG H, WISE S. OIV-A-4Chinese are more sensitive to warfarin than Asian Indians despite similar pharmacokinetics and vitamin K levels. Clin Pharmacol Ther 2006. [DOI: 10.1016/j.clpt.2005.12.117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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PARK S, KASE C. Re-Anticoagulation after Warfarin-Related Intracerebral Hemorrhage in Patients with Mechanical Heart Valves: The Clinical Dilemma. ACTA ACUST UNITED AC 2005. [DOI: 10.1053/j.scds.2006.03.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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YEO S, PARK S, PARK K, PARK Y. Therapeutic Efficacy of Tinnitus Retraining Therapy. Otolaryngol Head Neck Surg 2005. [DOI: 10.1016/j.otohns.2005.05.562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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PARK S, YEO S, BANG C, PARK K. The Effect of Steroid on Middle Ear Mucosal MUC5AC Expression. Otolaryngol Head Neck Surg 2005. [DOI: 10.1016/j.otohns.2005.05.276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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FLOREA A, SMIT J, DEPEW A, GAINES R, LEE C, PARK S, JOHN E, JUNG T. Effect of Dexamethasone on Nitric Oxide-Induced Hearing Loss. Otolaryngol Head Neck Surg 2005. [DOI: 10.1016/j.otohns.2005.05.177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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CHUNG P, LEE S, JUNG J, PARK S, KIM Y. The Comparison Between Laser Cordectomy and Radiation Therapy for T1 Glottic Carcinoma. Otolaryngol Head Neck Surg 2005. [DOI: 10.1016/j.otohns.2005.05.531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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PARK S, CHAO X, GONZALEZBONET G, BEEL B, BILWES A, CRANE B. Structure and Function of an Unusual Family of Protein PhosphatasesThe Bacterial Chemotaxis Proteins CheC and CheX. Mol Cell 2004. [DOI: 10.1016/s1097-2765(04)00644-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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PARK S, BREWER M, McKEITH F, BECHTEL P, NOVAKOFSKI J. Salt, Cryoprotectants and Preheating Temperature Effects on Surimi-like Material from Beef or Pork. J Food Sci 1996. [DOI: 10.1111/j.1365-2621.1996.tb12204.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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PARK S. The combined 5-HT2 receptor and calcium channel inhibitor LU49938 restores endothelium dependent responses in the regenerated endothelium of the porcine coronary artery*1. Cardiovasc Res 1995. [DOI: 10.1016/0008-6363(96)88552-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/17/2022] Open
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