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Druzhinin SI, Galievsky VA, Demeter A, Kovalenko SA, Senyushkina T, Dubbaka SR, Knochel P, Mayer P, Grosse C, Stalke D, Zachariasse KA. Two-State Intramolecular Charge Transfer (ICT) with 3,5-Dimethyl-4-(dimethylamino)benzonitrile (MMD) and Its Meta-Isomer mMMD. Ground State Amino Twist Not Essential for ICT. J Phys Chem A 2015; 119:11820-36. [PMID: 26559045 DOI: 10.1021/acs.jpca.5b09368] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
From X-ray structure analysis, amino twist angles of 90.0° for 2,4-dimethyl-3-(dimethylamino)benzonitrile (mMMD), 82.7° for 4-(di-tert-butylamino)benzonitrile (DTABN), and 88.7° for 6-cyanobenzoquinuclidine (CBQ) are determined, all considerably larger than the 57.4° of 3,5-dimethyl-4-(dimethylamino)benzonitrile (MMD). This large twist leads to lengthening of the amino-phenyl bond, 143.5 pm (mMMD), 144.1 pm (DTABN), 144.6 pm (CBQ), and 141.4 pm (MMD), as compared with 136.5 pm for the planar 4-(dimethylamino)benzonitrile (DMABN). As a consequence, the electronic coupling between the amino and phenyl subgroups in mMMD, DTABN, CBQ, and MMD is much weaker than in DMABN, as seen from the strongly reduced molar absorption coefficients. The fluorescence spectrum of MMD in n-hexane at 25 °C consists of two emissions, from a locally excited (LE) and an intramolecular charge transfer (ICT) state, with a fluorescence quantum yield ratio Φ'(ICT)/Φ(LE) of 12.8. In MeCN, a single ICT emission is found. With mMMD in n-hexane, in contrast, only LE fluorescence is observed, whereas the spectrum in MeCN originates from the ICT state. These differences are also seen from the half-widths of the overall fluorescence bands, which in n-hexane are larger for MMD than for mMMD, decreasing with solvent polarity for MMD and increasing for mMMD, reflecting the disappearance of LE and the onset of ICT in the overall spectra, respectively. From solvatochromic measurements the dipole moments μe(ICT) of MMD (16 D) and mMMD (15 D) are obtained. Femtosecond excited state absorption (ESA) spectra at 22 °C, together with the dual (LE + ICT) fluorescence, reveal that MMD in n-hexane undergoes a reversible LE ⇄ ICT reaction, with LE as the precursor, with a forward rate constant ka = 5.6 × 10(12) s(-1) and a back-reaction kd ∼ 0.05 × 10(12) s(-1). With MMD in the strongly polar solvent MeCN, ICT is faster: ka = 10 × 10(12) s(-1). In the case of mMMD in n-hexane, the ESA spectra show that ICT does not take place, contrary to MeCN, in which ka = 2.5 × 10(12) s(-1). The ICT reactions with MMD and mMMD are much faster than that of the parent compound DMABN in MeCN, with ka = 0.24 × 10(12) s(-1). Because of the very short ICT reaction times of 180 fs (MMD, n-hexane), 100 fs (MMD, MeCN), and 400 fs (mMMD, MeCN), it is clear that the picosecond fluorescence decays of these systems appear to be single exponential, due to the insufficient time resolution of 3 ps. It is concluded that the faster LE → ICT reaction of MMD as compared with DMABN (ka = 0.24 × 10(12) s(-1) in MeCN) is caused by a smaller energy gap ΔE(S1,S2) between the lowest singlet excited states and not by the large amino twist angle. Similarly, the larger ΔE(S1,S2) of mMMD as compared with MMD is held responsible for its smaller ICT efficiency (no reaction in n-hexane).
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Affiliation(s)
- Sergey I Druzhinin
- Max-Planck-Institut für biophysikalische Chemie, Spektroskopie und Photochemische Kinetik , 37070 Göttingen, Germany
| | - Victor A Galievsky
- Max-Planck-Institut für biophysikalische Chemie, Spektroskopie und Photochemische Kinetik , 37070 Göttingen, Germany
| | - Attila Demeter
- Institute of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Hungarian Academy of Sciences , P.O. Box 286, 1519 Budapest, Hungary
| | - Sergey A Kovalenko
- Institut für Chemie, Humboldt Universität zu Berlin , Brook-Taylor Strasse 2, 12489 Berlin, Germany
| | - Tamara Senyushkina
- Max-Planck-Institut für biophysikalische Chemie, Spektroskopie und Photochemische Kinetik , 37070 Göttingen, Germany
| | - Srinivas R Dubbaka
- Department Chemie und Biochemie, Ludwig-Maximilians-Universität , Butenandtstrasse 5-13, Haus F, 81377 München, Germany
| | - Paul Knochel
- Department Chemie und Biochemie, Ludwig-Maximilians-Universität , Butenandtstrasse 5-13, Haus F, 81377 München, Germany
| | - Peter Mayer
- Department Chemie und Biochemie, Ludwig-Maximilians-Universität , Butenandtstrasse 5-13, Haus F, 81377 München, Germany
| | - Christian Grosse
- Institut für Anorganische Chemie, Georg-August Universität , Tammannstrasse 4, 37077 Göttingen, Germany
| | - Dietmar Stalke
- Institut für Anorganische Chemie, Georg-August Universität , Tammannstrasse 4, 37077 Göttingen, Germany
| | - Klaas A Zachariasse
- Max-Planck-Institut für biophysikalische Chemie, Spektroskopie und Photochemische Kinetik , 37070 Göttingen, Germany
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Zambroń BK, Dubbaka SR, Marković D, Moreno-Clavijo E, Vogel P. Amide formation in one pot from carboxylic acids and amines via carboxyl and sulfinyl mixed anhydrides. Org Lett 2013; 15:2550-3. [PMID: 23642170 DOI: 10.1021/ol401053y] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
An efficient method has been developed for the preparation of yet unknown acyclic mixed anhydrides of carboxylic and sulfinic acids. Sterically hindered 2-methylbut-3-ene-2-sulfinyl carboxylates add primary and secondary amines preferentially onto the carbonyl moieties realizing a new method for the one-pot preparation of carboxamides. It uses 1:1 mixtures of carboxylic acids and amines without a base, requires no excess of reagents, and liberates only volatile coproducts. Protected di- and tripeptides have been prepared in solution without epimerization by application of this method.
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Affiliation(s)
- Bartosz K Zambroń
- Laboratory of Glycochemistry and Asymmetric Synthesis, Swiss Federal Institute of Technology (EPFL) , CH 1015 Lausanne, Switzerland
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Matt T, Ng CL, Lang K, Sha SH, Akbergenov R, Shcherbakov D, Meyer M, Duscha S, Xie J, Dubbaka SR, Perez-Fernandez D, Vasella A, Ramakrishnan V, Schacht J, Böttger EC. Dissociation of antibacterial activity and aminoglycoside ototoxicity in the 4-monosubstituted 2-deoxystreptamine apramycin. Proc Natl Acad Sci U S A 2012; 109:10984-9. [PMID: 22699498 PMCID: PMC3390888 DOI: 10.1073/pnas.1204073109] [Citation(s) in RCA: 152] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
Aminoglycosides are potent antibacterials, but therapy is compromised by substantial toxicity causing, in particular, irreversible hearing loss. Aminoglycoside ototoxicity occurs both in a sporadic dose-dependent and in a genetically predisposed fashion. We recently have developed a mechanistic concept that postulates a key role for the mitochondrial ribosome (mitoribosome) in aminoglycoside ototoxicity. We now report on the surprising finding that apramycin, a structurally unique aminoglycoside licensed for veterinary use, shows little activity toward eukaryotic ribosomes, including hybrid ribosomes which were genetically engineered to carry the mitoribosomal aminoglycoside-susceptibility A1555G allele. In ex vivo cultures of cochlear explants and in the in vivo guinea pig model of chronic ototoxicity, apramycin causes only little hair cell damage and hearing loss but it is a potent antibacterial with good activity against a range of clinical pathogens, including multidrug-resistant Mycobacterium tuberculosis. These data provide proof of concept that antibacterial activity can be dissected from aminoglycoside ototoxicity. Together with 3D structures of apramycin-ribosome complexes at 3.5-Å resolution, our results provide a conceptual framework for further development of less toxic aminoglycosides by hypothesis-driven chemical synthesis.
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Affiliation(s)
- Tanja Matt
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
| | - Chyan Leong Ng
- Structural Studies Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom
| | - Kathrin Lang
- Structural Studies Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom
| | - Su-Hua Sha
- Kresge Hearing Research Institute, Department of Otolaryngology, Head and Neck Surgery, University of Michigan, Ann Arbor, MI 48109; and
| | - Rashid Akbergenov
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
| | - Dmitri Shcherbakov
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
| | - Martin Meyer
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
| | - Stefan Duscha
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
| | - Jing Xie
- Kresge Hearing Research Institute, Department of Otolaryngology, Head and Neck Surgery, University of Michigan, Ann Arbor, MI 48109; and
| | - Srinivas R. Dubbaka
- Laboratorium für Organische Chemie, Eidgenössische Technische Hochschule Zürich, 8093 Zürich, Switzerland
| | - Déborah Perez-Fernandez
- Laboratorium für Organische Chemie, Eidgenössische Technische Hochschule Zürich, 8093 Zürich, Switzerland
| | - Andrea Vasella
- Laboratorium für Organische Chemie, Eidgenössische Technische Hochschule Zürich, 8093 Zürich, Switzerland
| | - V. Ramakrishnan
- Structural Studies Division, Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom
| | - Jochen Schacht
- Kresge Hearing Research Institute, Department of Otolaryngology, Head and Neck Surgery, University of Michigan, Ann Arbor, MI 48109; and
| | - Erik C. Böttger
- Institut für Medizinische Mikrobiologie, Universität Zürich, 8006 Zürich, Switzerland
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