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Devi M, Ramakrishnan E, Deka S, Parasar DP. Bacteria as a source of biopigments and their potential applications. J Microbiol Methods 2024; 219:106907. [PMID: 38387652 DOI: 10.1016/j.mimet.2024.106907] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 02/19/2024] [Accepted: 02/19/2024] [Indexed: 02/24/2024]
Abstract
From the prehistoric period, the utilization of pigments as colouring agents was an integral part of human life. Early people may have utilized paint for aesthetic motives, according to archaeologists. The pigments are either naturally derived or synthesized in the laboratory. Different studies reported that certain synthetic colouring compounds were toxic and had adverse health and environmental effects. Therefore, knowing the drawbacks of these synthetic colouring agents now scientists are attracted towards the harmless natural pigments. The main sources of natural pigments are plants, animals or microorganisms. Out of these natural pigments, microorganisms are the most important source for the production and application of bioactive secondary metabolites. Among all kinds of microorganisms, bacteria have specific benefits due to their short life cycle, low sensitivity to seasonal and climatic variations, ease of scaling, and ability to create pigments of various colours. Based on these physical characteristics, bacterial pigments appear to be a promising sector for novel biotechnological applications, ranging from functional food production to the development of new pharmaceuticals and biomedical therapies. This review summarizes the need for bacterial pigments, biosynthetic pathways of carotenoids and different applications of bacterial pigments.
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Affiliation(s)
- Moitrayee Devi
- Faculty of Paramedical Science (Microbiology), Assam down town University, Sankar Madhab Path, Gandhi Nagar, Panikhaiti, Guwahati, Assam 781026, India
| | - Elancheran Ramakrishnan
- Department of Chemistry, School of Engineering and Technology, Dhanalakshmi Srinivasan University, Tiruchirappalli, Tamil Nadu 621112, India
| | - Suresh Deka
- Faculty of Science, Assam down town University, Sankar Madhab Path, Gandhi Nagar, Panikhaiti, Guwahati, Assam 781026, India
| | - Deep Prakash Parasar
- Faculty of Science (Biotechnology), Assam down town University, Sankar Madhab Path, Gandhi Nagar, Panikhaiti, Guwahati, Assam 781026, India.
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Malakar C, Barman D, Kalita MC, Deka S. A biosurfactant-producing novel bacterial strain isolated from vermicompost having multiple plant growth-promoting traits. J Basic Microbiol 2023. [PMID: 37058008 DOI: 10.1002/jobm.202200608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 03/27/2023] [Accepted: 04/01/2023] [Indexed: 04/15/2023]
Abstract
The nutrient-rich vermicompost which is used as manure for the growth and development of plants is rich in microbial flora. These microbes protect the plants against several infectious pathogenic microbes. As certain microbes are known to produce biosurfactants as metabolites, an investigation was carried out to isolate biosurfactant-producing bacterial strains from vermicompost with the efficient antifungal property. From the study, it was revealed that biosurfactant-producing bacterial strains are present in the vermicompost. A total of nine bacterial strains were isolated from the vermicompost. Among them, one most efficient biosurfactant-producing bacterial strains with antifungal properties have been screened. After molecular characterization of the isolated strain, it was revealed that the bacterial strain is Bacillus licheniformis strain SCV1. The strain produces 3.4 ± 0.1 g/L of crude biosurfactant, which when column purified yields 3.1 ± 0.1 g/L of biosurfactant. The biosurfactant exhibited excellent emulsifying activity (E24 ) of 96.56% against crude oil. The produced biosurfactant was identified as a lipopeptide consisting of a mixer of surfactin and iturin. Furthermore, the biosurfactant exhibited significant antifungal activity against a wide range of phytopathogens, showing 76.3% inhibition against Sclerotinia sclerotiorum, 53% inhibition against Colletotrichum gloeosporioides, 51% against Fusarium verticillioides, and 36% against Corynespora cassicolla. Along with antifungal activities, the stain was found to exhibit multiple plant growth-promoting traits. This study, thus indicates that vermicompost might contain biosurfactant-producing microbes which can render protection to the plant against various phytopathogens by the production of biosurfactants and can also stimulate plant growth.
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Affiliation(s)
- Chandana Malakar
- Environmental Biotechnology Laboratory, Life Science Division, Institute of Advanced Study in Science and Technology, Guwahati, India
| | - Dipumani Barman
- Chemical Biology Laboratory I, Life Science Division, Institute of Advanced Study in Science and Technology, Guwahati, India
| | - Mohan C Kalita
- Department of Biotechnology, Gauhati University, Jalukbari, Guwahati, India
| | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Science Division, Institute of Advanced Study in Science and Technology, Guwahati, India
- Faculty of Science, Assam Down Town University, Panikhaiti, Guwahati, India
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Patowary K, Bhuyan T, Patowary R, Mohanta YK, Panda BP, Deka S, Islam NF, Joshi SJ, Sarma H. Soil treatment using a biosurfactant producing bacterial consortium in rice fields contaminated with oily sludge- a sustainable approach. Environ Res 2023; 220:115092. [PMID: 36587720 DOI: 10.1016/j.envres.2022.115092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2022] [Revised: 12/11/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
Abstract
A consortium of two biosurfactant-producing bacteria (Bacillus pumilus KS2 and Bacillus cereus R2) was developed to remediate petroleum hydrocarbon-contaminated paddy soil. Soil samples from a heavily contaminated rice field near Assam's Lakwa oilfield were collected and placed in earthen pots for treatment. After each month of incubation, 50 g of soil from each earthen pot was collected, and the soil TPH (ppm) in each sample was determined. The extracted TPH samples were analysed by Gas chromatography-mass spectrometry (GC-MS) to confirm microbial degradation. The soil samples were examined for changes in pH, conductivity, total organic content (TOC), water holding capacity, and total nitrogen content in addition to TPH degradation. An increasing trend in TPH degradation was observed with each passing month. After six months of treatment, the sample with the lowest initial TPH concentration (1735 ppm) had the highest degradation (91.24%), while the soil with the highest amount of TPH (5780 ppm) had the lowest degradation (74.35%). A wide range of aliphatic hydrocarbons found in soil samples was degraded by the bacterial consortium. The soil samples contained eight different low- and high-molecular-weight PAHs. Some were fully mineralized, while others were significantly reduced. With the decrease in the TPH level in the polluted soil, a significant improvement in the soil's physicochemical qualities (such as pH, electrical conductivity, total organic content, and water-holding capacity) was observed.
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Affiliation(s)
- Kaustuvmani Patowary
- Department of Applied Biology, School of Biological Sciences, University of Science and Technology Meghalaya (USTM), 9th Mile, Techno City, Baridua, Ri-Bhoi, 793101, Meghalaya, India; Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India
| | - Tamanna Bhuyan
- Department of Applied Biology, School of Biological Sciences, University of Science and Technology Meghalaya (USTM), 9th Mile, Techno City, Baridua, Ri-Bhoi, 793101, Meghalaya, India
| | - Rupshikha Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India
| | - Yugal Kishore Mohanta
- Department of Applied Biology, School of Biological Sciences, University of Science and Technology Meghalaya (USTM), 9th Mile, Techno City, Baridua, Ri-Bhoi, 793101, Meghalaya, India
| | - Bibhu Prasad Panda
- Salim Ali Center for Ornithology and Natural History, Coimbatore, 641108, India
| | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India
| | - Nazim Forid Islam
- Institutional Biotech Hub (IBT Hub), Department of Botany, NN Saikia College, Titabar, 785630, Assam, India
| | - Sanket J Joshi
- Oil & Gas Research Center, Central Analytical and Applied Research Unit, Sultan Qaboos University, Oman
| | - Hemen Sarma
- Bioremediation Technology Research Group, Department of Botany, Bodoland University, Rangalikhata, Deborgaon, 783370, Kokrajhar (BTR), Assam, India.
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Malakar C, Kashyap B, Kalita MC, Deka S. Wound healing efficacy of rhamnolipid-coated zinc oxide nanoparticle along with its in vivo antibacterial efficacy against Staphylococcus aureus. Exp Dermatol 2023; 32:154-164. [PMID: 36270963 DOI: 10.1111/exd.14692] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 10/05/2022] [Accepted: 10/13/2022] [Indexed: 11/30/2022]
Abstract
Rhamnolipids are microbial metabolites with antibacterial efficacies, which can be further boosted through the application of nanobiotechnology. In this study, the efficacy of rhamnolipid-coated zinc oxide nanoparticles (ZnRL) has been studied for their wound healing efficacy as well as in vivo antibacterial efficacy. Thus, this study evaluates the efficacy of ZnRL to heal an excised infected wound, which was compared with the healing efficacy of rhamnolipid and clindamycin. The study revealed that rhamnolipid-coated zinc oxide nanoparticles possess promising wound healing efficacy with prominent antibacterial activity in the rat model. Prominent wound healing in a Staphylococcus aureus infected excised wound was observed on the 5th day of the treatment when the wound site was treated with 100 μl of 0.5 mg/ml of ZnRL. This concentration of ZnRL was found to exhibit efficient antibacterial activity against the pathogen, thereby decreasing the amount of pathogen in the wound site. ZnRL exhibited efficient wound contraction, thereby decreasing the size of the wound prominently in 5 days. Histological study revealed efficient tissue remodelling in ZnRL-treated skin which resulted in rapid formation of the epidermis and recruitment of various dermal cells within the 5th day of treatment. The study also revealed the non-cytotoxic effect of the nanoparticles in fibroblast cell line L929 and the non-haemolytic effect against blood cells, indicating its potential in pharmaceuticals.
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Affiliation(s)
- Chandana Malakar
- Environmental Biotechnology Laboratory, Life Science Division, Institute of Advanced Study in Science and Technology, Guwahati, Assam, India.,Department of Biotechnology, Gauhati University, Guwahati, Assam, India
| | - Bhaswati Kashyap
- Chemical Biology Laboratory I, Life Science Division, Institute of Advanced Study in Science and Technology, Guwahati, Assam, India
| | | | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Science Division, Institute of Advanced Study in Science and Technology, Guwahati, Assam, India.,Faculty of Science, Assam Down Town University, Guwahati, Assam, India
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Mehra S, Hariharan N, Deka S. AB0318 PREVALENCE OF SECONDARY SJOGREN’S SYNDROME IN PATIENTS WITH RHEUMATOID ARTHRITIS- A SINGLE CENTER STUDY FROM NORTHERN INDIA. Ann Rheum Dis 2022. [DOI: 10.1136/annrheumdis-2022-eular.4622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
BackgroundSjogren’s syndrome (SS) is a systemic autoimmune disease characterized by lymphocytic infiltration of salivary and lacrimal glands leading to dry eyes and dry mouth. Sjogren’s syndrome either present alone (primary Sjogren’s syndrome) or sometimes can occur with other autoimmune diseases like rheumatoid arthritis, systemic lupus erythematosus, and scleroderma. In such instances, the condition is termed secondary Sjogren’s syndrome. SS may be a marker of more aggressive joint disease in patients with RA, and hence it is essential to characterize the symptoms in the RA cohort, which may help in the management and treatment of the disease.ObjectivesPrimary ObjectiveThe primary objective of the current study is to estimate the prevalence of secondary Sjogren’s syndrome in a cohort of patients with rheumatoid arthritis.Secondary ObjectiveTo compare the clinical characteristics in rheumatoid arthritis patients with Sjogren’s syndrome and in rheumatoid arthritis patients without Sjogren’s syndrome.MethodsThe study was conducted from 2016-2018 in a tertiary care hospital in the Department of Rheumatology, New Delhi, India. Patients with a rheumatologist-diagnosed RA were enrolled. There were 726 patients with rheumatoid arthritis. Patients were enquired about their symptoms. Out of 726, 193 had secondary Sjogren’s syndrome (26.58%). In patients without Sjogren’s syndrome, complete clinical data were available only for 377 patients hence the analysis on the comparison of clinical characteristics was limited to 377 patients. The other patients were excluded due to lack of the data required for the study.ResultsIt was identified that out of 726 patients, 193 had symptoms of secondary Sjogren’s like dry eyes dry mouth, or both. It was found that in patients with secondary Sjogren’s syndrome (n=193), the mean age was significantly higher than those patients without secondary Sjogren’s syndrome (n=377) [52.58 ± 12.36 Vs. 48.42 ± 13.98, p=0.0005]. Similarly, the mean disease duration was significantly higher among RA patients with secondary SS than those without SS [10.76 ± 8.34 Vs. 6.81 ± 7.29, p<0.0001]. Similarly, co-morbidities like hypertension, diabetes mellitus, and hypothyroidism were more seen in patients with rheumatoid arthritis with Sjogren’s syndrome.In a meta-analysis involving 18 studies1, it was identified that the prevalence of SS in RA was 19.5%. The differences in the prevalence of secondary SS in RA patients could be attributable to inter-ethnic variation, disease duration, and clinical scores employed in the studies. Similar to our study, Santhosh et al.2 reported that patients with secondary SS had a longer disease duration than those without secondary SS.ConclusionThe prevalence of Sjogren’s syndrome among patients with rheumatoid arthritis in the North Indian cohort of patients with RA was 26.58%.References[1]Alani H, Henty JR, Thompson NL, Jury E, Ciurtin C. Systematic review and meta-analysis of the epidemiology of polyautoimmunity in Sjögren’s syndrome (secondary Sjögren’s syndrome) focusing on autoimmune rheumatic diseases. Scandinavian journal of rheumatology. 2018 Mar 4;47(2):141-54.[2]Santosh K, Dhir V, Singh S, Sood A, Gupta A, Sharma A, Sharma S. Prevalence of secondary Sjögren’s syndrome in Indian patients with rheumatoid arthritis: a single-center study. International journal of rheumatic diseases. 2017 Jul;20(7):870-4.Disclosure of InterestsNone declared
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Patowary R, Patowary K, Kalita MC, Deka S, Borah JM, Joshi SJ, Zhang M, Peng W, Sharma G, Rinklebe J, Sarma H. Biodegradation of hazardous naphthalene and cleaner production of rhamnolipids - Green approaches of pollution mitigation. Environ Res 2022; 209:112875. [PMID: 35122743 DOI: 10.1016/j.envres.2022.112875] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 01/23/2022] [Accepted: 01/30/2022] [Indexed: 06/14/2023]
Abstract
Toxic and hazardous waste poses a serious threat to human health and the environment. Green remediation technologies are required to manage such waste materials, which is a demanding and difficult task. Here, effort was made to explore the role of Pseudomonas aeruginosa SR17 in alleviating naphthalene via catabolism and simultaneously producing biosurfactant. The results showed up to 89.2% naphthalene degradation at 35 °C and pH 7. The GC/MS analysis revealed the generation of naphthalene degradation intermediates. Biosurfactant production led to the reduction of surface tension of the culture medium to 34.5 mN/m. The biosurfactant was further characterized as rhamnolipids. LC-MS of the column purified biosurfactant revealed the presence of both mono and di rhamnolipid congeners. Rhamnolipid find tremendous application in medical field and as well as in detergent industry and since they are of biological origin, they can be used as favorable alternative against their chemical counterparts. The study demonstrated that catabolism of naphthalene and concurrent formation of rhamnolipid can result in a dual activity process, namely environmental cleanup and production of a valuable microbial metabolite. Additionally, the present-day application of rhamnolipids is highlighted.
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Affiliation(s)
- Rupshikha Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India
| | - Kaustuvmani Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India
| | - Mohan Chandra Kalita
- Department of Biotechnology, Gauhati University, Guwahati, 781 014, Assam, India
| | - Suresh Deka
- Faculty of Sciences, Assam Down Town University, Guwahati, Assam, 781026, India
| | - Jayanta Madhab Borah
- Department of Chemistry, Nandanath Saikia College, Titabar, 785630, Assam, India
| | - Sanket J Joshi
- Oil & Gas Research Center, Central Analytical and Applied Research Unit, Sultan Qaboos University, Oman
| | - Ming Zhang
- Department of Environmental Engineering, China Jiliang University, No. 258 Xueyuan Street, Hangzhou, 310018, Zhejiang, China
| | - Wanxi Peng
- School of Forestry, Henan Agricultural University, Zhengzhou, 450002, China
| | - Gaurav Sharma
- International Research Centre of Nanotechnology for Himalayan Sustainability (IRCNHS), Shoolini University, Solan 173212, Himachal Pradesh, India; College of Materials Science and Engineering, Shenzhen Key Laboratory of Polymer Science and Technology, Guangdong Research Center for Interfacial Engineering of Functional Materials, Nanshan District Key Lab. for Biopolymers and Safety Evaluation, Shenzhen University, Shenzhen, 518060, PR China; School of Science and Technology, Shoolini University, Saharanpur, India
| | - Jörg Rinklebe
- School of Forestry, Henan Agricultural University, Zhengzhou, 450002, China; International Research Centre of Nanotechnology for Himalayan Sustainability (IRCNHS), Shoolini University, Solan 173212, Himachal Pradesh, India; Laboratory of Soil- and Groundwater-Management, Institute of Soil Engineering, Waste and Water Science, Faculty of Architecture and Civil Engineering, University of Wuppertal, Pauluskirchstraße 7, 42285, Wuppertal, Germany; Department of Environment, Energy and Geoinformatics, Sejong University, 98 Gunja-Dong, Guangjin-Gu, Seoul, Republic of Korea
| | - Hemen Sarma
- Bioremediation Technology Research Group, Department of Botany, Bodoland University, Rangalikhata, Deborgaon, Kokrajhar (BTR), Assam, 783370, India.
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Goswami M, Deka S. Isolation of a novel rhizobacteria having multiple plant growth promoting traits and antifungal activity against certain phytopathogens. Microbiol Res 2020; 240:126516. [DOI: 10.1016/j.micres.2020.126516] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Revised: 05/03/2020] [Accepted: 05/04/2020] [Indexed: 10/24/2022]
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Sen S, Borah SN, Bora A, Deka S. Rhamnolipid exhibits anti-biofilm activity against the dermatophytic fungi Trichophyton rubrum and Trichophyton mentagrophytes. ACTA ACUST UNITED AC 2020; 27:e00516. [PMID: 32884912 PMCID: PMC7451867 DOI: 10.1016/j.btre.2020.e00516] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Revised: 08/04/2020] [Accepted: 08/06/2020] [Indexed: 10/25/2022]
Abstract
Dermatophytes are responsible for a majority of fungal infections in humans and other vertebrates, causing dermatophytosis. Treatment failures are often associated with biofilm formation, making dermatophytes resistant to antifungals. In this study, effects of a rhamnolipid (RL-SS14) produced by Pseudomonas aeruginosa SS14 on planktonic cells of Trichophyton rubrum and Trichophyton mentagrophytes, their biofilm formation, and disruption of mature biofilms were assessed. The composition of RL-SS14 was analysed using FTIR, HPLC-ESI-MS, and GC-MS. Minimum inhibitory concentrations against the planktonic forms of T. rubrum and T. mentagrophytes were 0.5 mg/mL and 0.125 mg/mL, respectively. Crystal-violet (biofilm biomass) and safranin (extracellular matrix) staining revealed that RL-SS14 significantly inhibited biofilm formation and also reduced preformed biofilms in a dose-dependent manner. Microscopic visualization of treated biofilms via SEM, AFM, and CLSM revealed marked morphological damage, cell death, and reduced extracellular matrix. The results indicate the potential of RL-SS14 as an anti-biofilm agent against dermatophytes.
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Affiliation(s)
- Suparna Sen
- Environmental Biotechnology Laboratory, Resource Management and Environment Section, Life Sciences Division, Institute of Advanced Study in Science and Technology, Vigyan Path, Paschim Boragaon, Garchuk, Guwahati, 781035, Assam, India
| | - Siddhartha Narayan Borah
- Environmental Biotechnology Laboratory, Resource Management and Environment Section, Life Sciences Division, Institute of Advanced Study in Science and Technology, Vigyan Path, Paschim Boragaon, Garchuk, Guwahati, 781035, Assam, India.,Centre for the Environment, Indian Institute of Technology Guwahati, North Guwahati, Guwahati, 781039, Assam, India
| | - Arijit Bora
- Department of Bioengineering and Technology, Institute of Science and Technology, Gauhati University, Gopinath Bordoloi Nagar, Guwahati, 781014, Assam, India
| | - Suresh Deka
- Environmental Biotechnology Laboratory, Resource Management and Environment Section, Life Sciences Division, Institute of Advanced Study in Science and Technology, Vigyan Path, Paschim Boragaon, Garchuk, Guwahati, 781035, Assam, India
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Sen S, Borah SN, Kandimalla R, Bora A, Deka S. Sophorolipid Biosurfactant Can Control Cutaneous Dermatophytosis Caused by Trichophyton mentagrophytes. Front Microbiol 2020; 11:329. [PMID: 32226417 PMCID: PMC7080852 DOI: 10.3389/fmicb.2020.00329] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Accepted: 02/14/2020] [Indexed: 12/13/2022] Open
Abstract
Trichophyton mentagrophytes, a zoophilic species, is one of the most frequently isolated dermatophytes in many parts of the world. This study investigated the efficacy of a sophorolipid (SL-YS3) produced by Rhodotorula babjevae YS3 against dermatophytosis caused by T. mentagrophytes. SL-YS3 was characterized by gas chromatography–mass spectrometry (GC–MS) and ultra-performance liquid chromatography, coupled with electrospray mass spectrometry (UPLC-ESI-MS). SL-YS3 comprised of six different fatty acids as the hydrophobic components of constituent congeners and sophorose as the hydrophilic component. Inhibitory effects of purified SL-YS3 against hyphal growth was found to be 85% at a 2 mg ml–1 concentration, and MIC was 1 mg ml–1. Microscopic examination with scanning electron microscopy (SEM), atomic force microscopy, and confocal laser scanning microscopy (CLSM) revealed that SL-YS3 exerts its effect by disrupting cell membrane integrity causing cell death. SL-YS3 was also effective in reducing the biofilms formed by T. mentagrophytes, which was observed spectrophotometrically with crystal-violet staining and further validated with SEM and CLSM studies of treated biofilms. In vivo studies in a mouse model of cutaneous dermatophytosis involving macroscopic observations, percent culture recovery from skin samples, and histopathological studies showed that SL-YS3 could effectively cure the infected mice after 21 days of topical treatment. Terbinafine (TRB) was used as a standard drug in the experiments. We demonstrate, for the first time, the antidermatophytic activity of a sophorolipid biosurfactant. The findings are suggestive that SL-YS3 can be formulated as a novel antifungal compound to treat cutaneous mycoses caused by T. mentagrophytes.
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Affiliation(s)
- Suparna Sen
- Environmental Biotechnology Laboratory, Resource Management and Environment Section, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, India
| | - Siddhartha Narayan Borah
- Environmental Biotechnology Laboratory, Resource Management and Environment Section, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, India
| | - Raghuram Kandimalla
- Drug Discovery Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, India
| | - Arijit Bora
- Department of Bioengineering and Technology, Institute of Science and Technology, Gauhati University, Guwahati, India
| | - Suresh Deka
- Environmental Biotechnology Laboratory, Resource Management and Environment Section, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, India
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Goswami M, Deka S. Biosurfactant production by a rhizosphere bacteria Bacillus altitudinis MS16 and its promising emulsification and antifungal activity. Colloids Surf B Biointerfaces 2019; 178:285-296. [DOI: 10.1016/j.colsurfb.2019.03.003] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 03/01/2019] [Accepted: 03/02/2019] [Indexed: 01/12/2023]
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Sen S, Borah SN, Kandimalla R, Bora A, Deka S. Efficacy of a rhamnolipid biosurfactant to inhibit
Trichophyton rubrum
in vitro and in a mice model of dermatophytosis. Exp Dermatol 2019; 28:601-608. [DOI: 10.1111/exd.13921] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2018] [Revised: 03/06/2019] [Accepted: 03/18/2019] [Indexed: 01/22/2023]
Affiliation(s)
- Suparna Sen
- Environmental Biotechnology Laboratory, Resource Management and Environment Section Life Sciences Division Institute of Advanced Study in Science and Technology Guwahati Assam India
| | - Siddhartha Narayan Borah
- Environmental Biotechnology Laboratory, Resource Management and Environment Section Life Sciences Division Institute of Advanced Study in Science and Technology Guwahati Assam India
| | - Raghuram Kandimalla
- Drug Discovery Laboratory Life Sciences Division Institute of Advanced Study in Science and Technology Guwahati Assam India
| | - Arijit Bora
- Department of Bioengineering and Technology Institute of Science and Technology Gauhati University Guwahati Assam India
| | - Suresh Deka
- Environmental Biotechnology Laboratory, Resource Management and Environment Section Life Sciences Division Institute of Advanced Study in Science and Technology Guwahati Assam India
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Patowary K, Das M, Patowary R, Kalita MC, Deka S. Recycling of Bakery Waste as an Alternative Carbon Source for Rhamnolipid Biosurfactant Production. J SURFACTANTS DETERG 2018. [DOI: 10.1002/jsde.12242] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Kaustuvmani Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division; Institute of Advanced Study in Science & Technology (IASST); Paschim Boragaon, Guwahati Assam India
| | - Moonjit Das
- Centre for Biotechnology & Bioinformatics; Dibrugarh University; Dibrugarh Assam India
| | - Rupshikha Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division; Institute of Advanced Study in Science & Technology (IASST); Paschim Boragaon, Guwahati Assam India
| | | | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Sciences Division; Institute of Advanced Study in Science & Technology (IASST); Paschim Boragaon, Guwahati Assam India
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Sen S, Borah SN, Bora A, Deka S. Production, characterization, and antifungal activity of a biosurfactant produced by Rhodotorula babjevae YS3. Microb Cell Fact 2017; 16:95. [PMID: 28558761 PMCID: PMC5450096 DOI: 10.1186/s12934-017-0711-z] [Citation(s) in RCA: 87] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Accepted: 05/26/2017] [Indexed: 11/10/2022] Open
Abstract
Background Sophorolipids are one of the most promising glycolipid biosurfactants and have been successfully employed in bioremediation and various other industrial sectors. They have also been described to exhibit antimicrobial activity against different bacterial species. Nevertheless, previous literature pertaining to the antifungal activity of sophorolipids are limited indicating the need for further research to explore novel strains with wide antimicrobial activity. A novel yeast strain, Rhodotorula babjevae YS3, was recently isolated from an agricultural field in Assam, Northeast India. This study was primarily emphasized at the characterization and subsequent evaluation of antifungal activity of the sophorolipid biosurfactant produced by R. babjevae YS3. Results The growth kinetics and biosurfactant production by R. babjevae YS3 was evaluated by cultivation in Bushnell-Haas medium containing glucose (10% w/v) as the sole carbon source. A reduction in the surface tension of the culture medium from 70 to 32.6 mN/m was observed after 24 h. The yield of crude biosurfactant was recorded to be 19.0 g/l which might further increase after optimization of the growth parameters. The biosurfactant was characterized to be a heterogeneous sophorolipid (SL) with both lactonic and acidic forms after TLC, FTIR and LC–MS analyses. The SL exhibited excellent oil spreading and emulsifying activity against crude oil at 38.46 mm2 and 100% respectively. The CMC was observed to be 130 mg/l. The stability of the SL was evaluated over a wide range of pH (2–10), salinity (2–10% NaCl) and temperature (at 120 °C for time intervals of 30 up to 120 min). The SL was found to retain surface-active properties under the extreme conditions. Additionally, the SL exhibited promising antifungal activity against a considerably broad group of pathogenic fungi viz. Colletotrichum gloeosporioides, Fusarium verticilliodes, Fusarium oxysporum f. sp. pisi, Corynespora cassiicola, and Trichophyton rubrum. Conclusions The study reports, for the first time, the biosurfactant producing ability of R. babjevae, a relatively lesser studied yeast. The persistent surface active properties of the sophorolipid in extreme conditions advocates its applicability in diverse environmental and industrial sectors. Further, antifungal activities against plant and human pathogens opens up possibilities for development of efficient and eco-friendly antifungal agents with agricultural and biomedical applications.
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Affiliation(s)
- Suparna Sen
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology(IASST), Vigyan Path, Paschim Boragaon, Garchuk, Guwahati, Assam, 781035, India
| | - Siddhartha Narayan Borah
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology(IASST), Vigyan Path, Paschim Boragaon, Garchuk, Guwahati, Assam, 781035, India
| | - Arijit Bora
- Department of Bioengineering and Technology, Institute of Science and Technology, Gauhati University, Jalukbari, Guwahati, Assam, India
| | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology(IASST), Vigyan Path, Paschim Boragaon, Garchuk, Guwahati, Assam, 781035, India.
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Patowary K, Patowary R, Kalita MC, Deka S. Characterization of Biosurfactant Produced during Degradation of Hydrocarbons Using Crude Oil As Sole Source of Carbon. Front Microbiol 2017; 8:279. [PMID: 28275373 PMCID: PMC5319985 DOI: 10.3389/fmicb.2017.00279] [Citation(s) in RCA: 113] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Accepted: 02/09/2017] [Indexed: 11/24/2022] Open
Abstract
Production and spillage of petroleum hydrocarbons which is the most versatile energy resource causes disastrous environmental pollution. Elevated oil degrading performance from microorganisms is demanded for successful microbial remediation of those toxic pollutants. The employment of biosurfactant-producing and hydrocarbon-utilizing microbes enhances the effectiveness of bioremediation as biosurfactant plays a key role by making hydrocarbons bio-available for degradation. The present study aimed the isolation of a potent biosurfactant producing indigenous bacteria which can be employed for crude oil remediation, along with the characterization of the biosurfactant produced during crude oil biodegradation. A potent bacterial strain Pseudomonas aeruginosa PG1 (identified by 16s rDNA sequencing) was isolated from hydrocarbon contaminated soil that could efficiently produce biosurfactant by utilizing crude oil components as the carbon source, thereby leading to the enhanced degradation of the petroleum hydrocarbons. Strain PG1 could degrade 81.8% of total petroleum hydrocarbons (TPH) after 5 weeks of culture when grown in mineral salt media (MSM) supplemented with 2% (v/v) crude oil as the sole carbon source. GCMS analysis of the treated crude oil samples revealed that P. aeruginosa PG1 could potentially degrade various hydrocarbon contents including various PAHs present in the crude oil. Biosurfactant produced by strain PG1 in the course of crude oil degradation, promotes the reduction of surface tension (ST) of the culture medium from 51.8 to 29.6 mN m−1, with the critical micelle concentration (CMC) of 56 mg L−1. FTIR, LC-MS, and SEM-EDS studies revealed that the biosurfactant is a rhamnolipid comprising of both mono and di rhamnolipid congeners. The biosurfactant did not exhibit any cytotoxic effect to mouse L292 fibroblastic cell line, however, strong antibiotic activity against some pathogenic bacteria and fungus was observed.
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Affiliation(s)
- Kaustuvmani Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology Guwahati, India
| | - Rupshikha Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology Guwahati, India
| | - Mohan C Kalita
- Department of Biotechnology, Gauhati University Guwahati, India
| | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology Guwahati, India
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Patowary R, Patowary K, Devi A, Kalita MC, Deka S. Uptake of Total Petroleum Hydrocarbon (TPH) and Polycyclic Aromatic Hydrocarbons (PAHs) by Oryza sativa L. Grown in Soil Contaminated with Crude Oil. Bull Environ Contam Toxicol 2017; 98:120-126. [PMID: 27896384 DOI: 10.1007/s00128-016-1990-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Accepted: 11/23/2016] [Indexed: 06/06/2023]
Abstract
The purpose of this study was to determine whether total petroleum hydrocarbon (TPH) and polycyclic aromatic hydrocarbons (PAHs) present in crude oil contaminated sites are transferred to roots, shoots and finally the grains of rice crops (Oryza sativa L.) grown in those sites. Soil was artificially contaminated with crude oil at concentrations of 0, 1000, 5000, 10,000, and 15,000 mg/kg, followed by planting of rice seedlings. After harvest, TPH in plant samples were measured, and it was determined that the uptake of TPH by the plants gradually increased as the concentration of oil in soil increased. Further, from GC-MS analysis, it was observed that PAHs including naphthalene and phenanthrene bioaccumulated in rice plant parts. Vital physico-chemical properties of soil were also altered due to crude oil contamination. Our study revealed that rice plants grown in crude oil polluted sites can uptake TPH including PAHs, thus emphasising the importance of prior investigation of soil condition before cultivation of crops.
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Affiliation(s)
- Rupshikha Patowary
- Life Sciences Division, Environmental Biotechnology Laboratory, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781035, Assam, India
| | - Kaustuvmani Patowary
- Life Sciences Division, Environmental Biotechnology Laboratory, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781035, Assam, India
| | - Arundhuti Devi
- Life Sciences Division, Environmental Chemistry Laboratory, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781035, Assam, India
| | | | - Suresh Deka
- Life Sciences Division, Environmental Biotechnology Laboratory, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781035, Assam, India.
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Borah SN, Goswami D, Sarma HK, Cameotra SS, Deka S. Rhamnolipid Biosurfactant against Fusarium verticillioides to Control Stalk and Ear Rot Disease of Maize. Front Microbiol 2016; 7:1505. [PMID: 27708638 PMCID: PMC5030215 DOI: 10.3389/fmicb.2016.01505] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 09/08/2016] [Indexed: 12/04/2022] Open
Abstract
Antifungal activity of rhamnolipids (RLs) has been widely studied against many plant pathogenic fungi, but not against Fusarium verticillioides, a major pathogen of maize (Zea mays L.). F. verticillioides causes stalk and ear rot of maize or asymptomatically colonizes the plant and ears resulting in moderate to heavy crop loss throughout the world. F. verticillioides produces fumonisin mycotoxins, reported carcinogens, which makes the contaminated ears unsuitable for consumption. In this study, the RL produced using glucose as sole carbon source was characterized by FTIR and LCMS analyses and its antifungal activity against F. verticillioides was evaluated in vitro on maize stalks and seeds. Further, the effect of RL on the mycelia of F. verticillioides was investigated by scanning electron microscopy which revealed visible damage to the mycelial structure as compared to control samples. In planta, treatment of maize seeds with a RL concentration of 50 mg l-1 resulted in improved biomass and fruiting compared to those of healthy control plants and complete suppression of characteristic disease symptoms and colonization of maize by F. verticillioides. The study highlights the potential of RLs to be used for an effective biocontrol strategy against colonization of maize plant by F. verticillioides.
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Affiliation(s)
- Siddhartha N. Borah
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and TechnologyGuwahati, India
| | - Debahuti Goswami
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and TechnologyGuwahati, India
| | - Hridip K. Sarma
- Department of Biotechnology, Gauhati UniversityGuwahati, India
| | | | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and TechnologyGuwahati, India
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Patowary K, Patowary R, Kalita MC, Deka S. Development of an Efficient Bacterial Consortium for the Potential Remediation of Hydrocarbons from Contaminated Sites. Front Microbiol 2016; 7:1092. [PMID: 27471499 PMCID: PMC4943938 DOI: 10.3389/fmicb.2016.01092] [Citation(s) in RCA: 95] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2016] [Accepted: 06/30/2016] [Indexed: 11/25/2022] Open
Abstract
The intrinsic biodegradability of hydrocarbons and the distribution of proficient degrading microorganisms in the environment are very crucial for the implementation of bioremediation practices. Among others, one of the most favorable methods that can enhance the effectiveness of bioremediation of hydrocarbon-contaminated environment is the application of biosurfactant producing microbes. In the present study, the biodegradation capacities of native bacterial consortia toward total petroleum hydrocarbons (TPH) with special emphasis to poly aromatic hydrocarbons were determined. The purpose of the study was to isolate TPH degrading bacterial strains from various petroleum contaminated soil of Assam, India and develop a robust bacterial consortium for bioremediation of crude oil of this native land. From a total of 23 bacterial isolates obtained from three different hydrocarbons contaminated samples five isolates, namely KS2, PG1, PG5, R1, and R2 were selected as efficient crude oil degraders with respect to their growth on crude oil enriched samples. Isolates KS2, PG1, and R2 are biosurfactant producers and PG5, R1 are non-producers. Fourteen different consortia were designed involving both biosurfactant producing and non-producing isolates. Consortium 10, which comprises two Bacillus strains namely, Bacillus pumilus KS2 and B. cereus R2 (identified by 16s rRNA sequencing) has shown the best result in the desired degradation of crude oil. The consortium showed degradation up to 84.15% of TPH after 5 weeks of incubation, as revealed from gravimetric analysis. FTIR (Fourier transform infrared) and GCMS (Gas chromatography-mass spectrometer) analyses were correlated with gravimetric data which reveals that the consortium has removed a wide range of petroleum hydrocarbons in comparison with abiotic control including different aliphatic and aromatic hydrocarbons.
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Affiliation(s)
- Kaustuvmani Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology Guwahati, India
| | - Rupshikha Patowary
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology Guwahati, India
| | - Mohan C Kalita
- Department of Biotechnology, Gauhati University Guwahati, India
| | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology Guwahati, India
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Baruah P, Deka S, Baruah PP. Phytoremediation of crude oil-contaminated soil employing Crotalaria pallida Aiton. Environ Sci Pollut Res Int 2016; 23:10595-10603. [PMID: 26865490 DOI: 10.1007/s11356-016-6227-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2015] [Accepted: 02/01/2016] [Indexed: 06/05/2023]
Abstract
The purpose of the study was to evaluate the phytoremediation potentiality of a herb named Crotalaria pallida which are abundantly grown on crude oil-contaminated soil of oil field situated at upper Assam, India, so that this plant could be used to remediate hydrocarbon from contaminated soil. To evaluate the potentiality of the plant, a pot culture experiment was conducted taking 3 kg of rice field soil mixed with crude oil at a concentration of 10,000 (10 g/kg), 20,000 (20 g/kg), 30,000 (30 g/kg), 40,000 (40 g/kg), 50,000 (50 g/kg), 60,000 (60 g/kg), 70,000 (70 g/kg), 80,000 (80 g/kg), 90,000 (90 g/kg), and 100,000 (100 g/kg) ppm. Ten numbers of healthy seeds of C. pallida were sown in three pots of each concentration for germination, and after 15 days of germination, single healthy seedling in each pot was kept for the study. A control setup was also maintained without adding crude oil. The duration of the experiment was fixed for 6 months. The results showed that uptake of hydrocarbon by the plants was increased with increasing the concentration of crude oil in the soil up to 60,000 ppm. After that, uptake of hydrocarbon by the plants was found to be lower with increasing doses of crude oil concentration. Uptake of hydrocarbon by the shoot was found to be maximum, i.e., 35,018 ppm in 60,000 ppm concentration. Dissipation of total petroleum hydrocarbon (TPH) from the soil was also gradually increased with increasing concentration of crude oil in the soil up to 60,000 ppm. Maximum dissipation, i.e., 78.66 %, occurred in 60,000 ppm concentration of crude oil-mixed soil. The plant could not survive in 100,000 ppm concentration of crude oil-mixed soil. The results also demonstrated that there was a reduction in plant shoot and root biomass with an increase of crude oil concentration. Furthermore, results revealed that the shoot biomass was higher than root biomass in all the treatments.
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Affiliation(s)
- P Baruah
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India
| | - S Deka
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India.
| | - P P Baruah
- Department of Botany, Gauhati University, Guwahati, 781014, Assam, India
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Goswami D, Borah SN, Lahkar J, Handique PJ, Deka S. Antifungal properties of rhamnolipid produced by Pseudomonas aeruginosa DS9 against Colletotrichum falcatum. J Basic Microbiol 2015; 55:1265-74. [PMID: 26173581 DOI: 10.1002/jobm.201500220] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2015] [Accepted: 06/23/2015] [Indexed: 11/12/2022]
Abstract
The rhamnolipid biosurfactant (RL-DS9) extracted from the bacterial strain Pseudomonas aeruginosa DS9 was evaluated for its antifungal activity against Colletotrichum falcatum that causes red rot in sugarcane. The surface tension (ST) reduction, biosurfactant production, and antifungal activity of biosurfactant against C. falcatum were investigated by using the medium with different carbon sources and it was found to be maximum in glucose. Moreover, highest reduction of ST and production of biosurfactant was achieved at 4.5% (w/v) concentration of glucose. The efficacy of RL-DS9 was compared with a commercially available rhamnolipid (RL-R95) using microtitre plate assay. Results showed that at 100 μg ml(-1) concentration RL-DS9 exhibited 86.6% inhibition against C. falcatum spore germination, and in the same concentration RL-R95 showed 83.3% inhibition. From liquid chromatography-mass spectrometry (LC-MS) analysis, it was revealed that only two similar congeners Rha-(C10 ) and Rha-Rha-(C10:1 ) were found to be in common among both the rhamnolipids. In the plant bioassay test, it was noted that red rot incidence was reduced on the sugarcane plants treated with RL-DS9. This is the first report that rhamnolipid biosurfactant produced by Pseudomonas aeruginosa DS9 could be able to control red rot disease of sugarcane caused due to the infection with the fungus Colletotrichum falcatum.
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Affiliation(s)
- Debahuti Goswami
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology (IASST), Paschim Boragaon, Guwahati, Assam, India
| | - Siddhartha Narayan Borah
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology (IASST), Paschim Boragaon, Guwahati, Assam, India
| | - Jiumoni Lahkar
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology (IASST), Paschim Boragaon, Guwahati, Assam, India
| | | | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology (IASST), Paschim Boragaon, Guwahati, Assam, India
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Baruah P, Saikia RR, Baruah PP, Deka S. Effect of crude oil contamination on the chlorophyll content and morpho-anatomy of Cyperus brevifolius (Rottb.) Hassk. Environ Sci Pollut Res Int 2014; 21:12530-12538. [PMID: 24946711 DOI: 10.1007/s11356-014-3195-y] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2014] [Accepted: 06/11/2014] [Indexed: 06/03/2023]
Abstract
Chlorophyll plays a pivotal role in the plant physiology and its productivity. Cultivation of plants in crude oil contaminated soil has a great impact on the synthesis of chlorophyll pigment. Morpho-anatomy of the experimental plant also shows structural deformation in higher concentrations. Keeping this in mind, a laboratory investigation has been carried out to study the effect of crude oil on chlorophyll content and morpho-anatomy of Cyperus brevifolius plant. Fifteen-day-old seedling of the plant was planted in different concentrations of the crude oil mixed soil (i.e., 10,000, 20,000, 30,000, 40,000, and 50,000 ppm). A control setup was also maintained without adding crude oil. Results were recorded after 6 months of plantation. Investigation revealed that there is a great impact of crude oil contamination on chlorophyll content of the leaves of the experimental plant. It also showed that chlorophyll a, chlorophyll b, and total chlorophyll content of leaves grown in different concentrations of crude oil were found to be lower than those of the control plant. Further, results also demonstrated that chlorophyll content was lowest in the treatment that received maximum dose of crude oil. It also showed that chlorophyll content was decreased with increased concentration of crude oil. Results also demonstrated that there was a reduction in plant shoot and root biomass with the increase of crude oil concentration. Results also revealed that the shoot biomass is higher than root biomass. Morphology and anatomy of the experimental plant also show structural deformation in higher concentrations. Accumulation of crude oil on the cuticle of the transverse section of the leaves and shoot forms a thick dark layer. Estimation of the level of pollution in an environment due to oil spill is possible by the in-depth study of the harmful effects of oil on the morphology and anatomy and chlorophyll content of the plants grown in that particular environment.
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Affiliation(s)
- Plabita Baruah
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India
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Patowary K, Saikia RR, Kalita MC, Deka S. Degradation of polyaromatic hydrocarbons employing biosurfactant-producing Bacillus pumilus KS2. ANN MICROBIOL 2014. [DOI: 10.1007/s13213-014-0854-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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Saikia RR, Deka S. Removal of hydrocarbon from refinery tank bottom sludge employing microbial culture. Environ Sci Pollut Res Int 2013; 20:9026-9033. [PMID: 23764986 DOI: 10.1007/s11356-013-1888-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2012] [Accepted: 05/30/2013] [Indexed: 06/02/2023]
Abstract
Accumulation of oily sludge is becoming a serious environmental threat, and there has not been much work reported for the removal of hydrocarbon from refinery tank bottom sludge. Effort has been made in this study to investigate the removal of hydrocarbon from refinery sludge by isolated biosurfactant-producing Pseudomonas aeruginosa RS29 strain and explore the biosurfactant for its composition and stability. Laboratory investigation was carried out with this strain to observe its efficacy of removing hydrocarbon from refinery sludge employing whole bacterial culture and culture supernatant to various concentrations of sand-sludge mixture. Removal of hydrocarbon was recorded after 20 days. Analysis of the produced biosurfactant was carried out to get the idea about its stability and composition. The strain could remove up to 85 ± 3 and 55 ± 4.5 % of hydrocarbon from refinery sludge when whole bacterial culture and culture supernatant were used, respectively. Maximum surface tension reduction (26.3 mN m(-1)) was achieved with the strain in just 24 h of time. Emulsification index (E24) was recorded as 100 and 80 % with crude oil and n-hexadecane, respectively. The biosurfactant was confirmed as rhamnolipid containing C8 and C10 fatty acid components and having more mono-rhamnolipid congeners than the di-rhamnolipid ones. The biosurfactant was stable up to 121 °C, pH 2-10, and up to a salinity value of 2-10 % w/v. To our knowledge, this is the first report showing the potentiality of a native strain from the northeast region of India for the efficient removal of hydrocarbon from refinery sludge.
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Affiliation(s)
- Rashmi Rekha Saikia
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology (IASST), Paschim Boragaon, Guwahati, 781 035, Assam, India,
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Goswami D, Handique PJ, Deka S. Rhamnolipid biosurfactant againstFusarium sacchari-the causal organism of pokkah boeng disease of sugarcane. J Basic Microbiol 2013; 54:548-57. [DOI: 10.1002/jobm.201200801] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Accepted: 01/19/2013] [Indexed: 11/09/2022]
Affiliation(s)
- Debahuti Goswami
- Environmental Biotechnology Laboratory, Life Sciences Division; Institute of Advanced Study in Science and Technology (IASST); Paschim Boragaon Garchuk, Guwahati, Assam India
| | | | - Suresh Deka
- Environmental Biotechnology Laboratory, Life Sciences Division; Institute of Advanced Study in Science and Technology (IASST); Paschim Boragaon Garchuk, Guwahati, Assam India
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Saikia RR, Deka S, Deka M, Sarma H. Optimization of environmental factors for improved production of rhamnolipid biosurfactant by Pseudomonas aeruginosa RS29 on glycerol. J Basic Microbiol 2011; 52:446-57. [PMID: 22144225 DOI: 10.1002/jobm.201100228] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2011] [Accepted: 09/09/2011] [Indexed: 11/11/2022]
Abstract
A biosurfactant producing Pseudomonas aeruginosa RS29 (identified on the basis of 16S rDNA analysis) with good foaming and emulsification properties has been isolated from crude oil contaminated sites. Optimization of different environmental factors was carried out with an objective to achieve maximum production of biosurfactant. Production of biosurfactant was estimated in terms of surface tension reduction and emulsification (E24) index. It was recorded that the isolated strain produced highest biosurfactant after 48 h of incubation at 37.5 °C, with a pH range of 7-8 and at salinity <0.8% (w/v). Ammonium nitrate used in the experiment was the best nitrogen source for the growth of biomass of P. aeruginosa RS29. On the other hand sodium and potassium nitrate enhanced the production of biosurfactant (Surface tension, 26.3 and 26.4 mN/m and E24 index, 80 and 79% respectively). The CMC of the biosurfactant was 90 mg/l. Maximum biomass (6.30 g/l) and biosurfactant production (0.80 g/l) were recorded at an optimal C/N ratio of 12.5. Biochemical analysis and FTIR spectra confirmed that the biosurfactant was rhamnolipid in nature. GC-MS analysis revealed the presence of C(8) and C(10) fatty acid components in the purified biosurfactant.
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Affiliation(s)
- Rashmi Rekha Saikia
- Environmental Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science & Technology, Paschim Boragaon, Guwahati, Assam, India.
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Deka H, Deka S, Baruah CK, Das J, Hoque S, Sarma H, Sarma NS. Vermicomposting potentiality of Perionyx excavatus for recycling of waste biomass of Java citronella--an aromatic oil yielding plant. Bioresour Technol 2011; 102:11212-11217. [PMID: 22014704 DOI: 10.1016/j.biortech.2011.09.102] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2011] [Revised: 09/23/2011] [Accepted: 09/24/2011] [Indexed: 05/31/2023]
Abstract
Laboratory investigation on vermicomposting efficacy of Perionyx excavatus for recycling of distillation waste biomass of java citronella (Cymbopogon winterianus Jowitt) was carried out in two seasonal trials i.e. summer and winter periods. The experiment was conducted in earthen pots using a mixture of citronella waste material and cowdung in the proportion of 5:1. A control treatment without earthworms was setup for comparison of the results. The vermicompost had shown 5.8 folds reduction in C/N ratio and 5.6 folds enhancement in ash content. The nutrient contents (N, P, K, Ca and Mg) in the vermicompost had increase in the range of 1.2 - 4.1 fold than the initial level. The FT-IR spectra of the vermicompost confirmed increase in nitrogen rich compounds and decrease in aliphatic/aromatic compounds as compared to the initial level of the biowaste materials. The vermicomposting process is influenced by seasonal variation and summer was more productive than winter.
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Affiliation(s)
- H Deka
- Life Science Division, Institute of Advanced Study in Science and Technology, Guwahati 35, Assam, India.
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Affiliation(s)
- S Deka
- Vitreoretina Service, Sri Sankaradeva Nethralaya, Beltola, India
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Deka H, Deka S, Baruah CK, Das J, Hoque S, Sarma NS. Vermicomposting of distillation waste of citronella plant (Cymbopogon winterianus Jowitt.) employing Eudrilus eugeniae. Bioresour Technol 2011; 102:6944-6950. [PMID: 21550233 DOI: 10.1016/j.biortech.2011.04.027] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2010] [Revised: 04/09/2011] [Accepted: 04/10/2011] [Indexed: 05/30/2023]
Abstract
Laboratory experiment on vermicomposting of distillation waste of java citronella (Cymbopogon winterianus Jowitt.) was carried out employing Eudrilus eugeniae, in two seasonal trials, covering summer and winter periods. Two vermicomposting treatments were conducted in earthen pots, one with citronella plant waste only (CW) and the other, a mixture of citronella waste and cowdung in the proportion 5:1 (CW+CD). Vermicomposting of citronella waste resulted reduction in C/N ratio (83.5-87.7%), enhancement of ash content and a number of macro and micronutrients. The FT-IR spectroscopy of the vermicompost revealed the reduction in aliphatic and aromatic compound as well as increase in amide group after the 105 days stabilization process. The vermicompost output was significantly enhanced in CW+CD treatment than CW treatment. Even, nutrient content of the vermicompost was also higher in CW+CD treatment than CW alone indicating the positive role of cowdung in improvement of quantity and quality.
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Affiliation(s)
- H Deka
- Resource Management and Environment Division, Institute of Advanced Study in Science and Technology, Guwahati-35, Assam, India.
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Medhi UJ, Talukdar AK, Deka S. Impact of paper mill effluent on growth and development of certain agricultural crops. J Environ Biol 2011; 32:185-188. [PMID: 21882653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The physico-chemical characteristics of paper mill industry effluent were measured and some were found to be above the permissible limits prescribed by Indian irrigation water standard. A study was conducted in pots to investigate the effects of different concentrations (10, 20, 30, 40, 50, 60, 70, 80 and 100%) of paper mill effluent on growth and production of rice, mustard and peafor three years. The study reveals that the paper mill effluent has deleterious effect on the growth of crop at higher concentrations. However, at lower concentration (viz. 10 to 40% in rice, 10 to 50% in mustard and 10 to 60% in pea) of effluent, beneficial impact on general welfare of the crops was noticed. Growth and development was increased with increasing the concentration of the effluent up to 30% in rice, 40% in mustard and 50% in pea. Investigation showed that the growth and production of rice, mustard and pea was found maximum at a concentration of 30, 40 and 50% effluent respectively.
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Affiliation(s)
- U J Medhi
- Pub-Kamrup College, Baihata Chariali -781 381, India
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Abstract
In this review, we evaluate the reports published between 1993 and 2011 that address the heavy metal accumulation in 88 medicinal plant species. We compare the safe limits for heavy metals set by governmental agencies vs. the levels at which such metals actually exist in selected medicinal plants. We also evaluate the uses and effectiveness of medicinal plants in health care, and assess the hazards of medicinal plant uses, in view of the growing worldwide use of medicinal plants. From our extensive review of the literature, we discovered that a maximum permissible level (MPL) of Pb is exceeded in 21 plant medicine species, Cd in 44 species, and Hg in 10 species. Vetiveria zizanioides a potential candidate species for the treatment of cardiovascular diseases absorb a wide range of heavy metals from metal-contaminated soils. We believe that this species is the single most impressive example of a potentially hazardous medicinal plant. Based on our review, we endorse the hypothesis that heavy metal accumulation by medicinal plants is mainly caused by extraction of soluble metals from contaminated soil, sediments and air. One continuing problem in protecting consumers of plant-based medicines is that permissible levels of all heavy metals in herbal medicine have not yet been standardized by regulating governmental entities. Moreover, there are few limit tests that exist for heavy metal content of medicinal plants, or permissible limits for essential dietary minerals, in most medicinal plants. The dearth of such limits hamstrings development of medicinal plant research and delays the release of either new or improved versions of medicinal plants or their components. In the present review, we emphasize that medicinal plants are often subjected to heavy metal contamination and that the levels at which these heavy metals sometimes occur exceeds permissible levels for some species. Therefore, collecting medicinal plants from areas that are, or may be, contaminated should be discouraged and banned if possible.
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Affiliation(s)
- Hemen Sarma
- Environmental Biotechnology Laboratory, Resource Management and Environment Division, Institute of Advanced Study in Science and Technology, Guwahati, Assam 781 035, India.
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Biswas J, Deka S, Padmaja S, Madhavan HN, Kumarasamy N, Solomon S. Central retinal vein occlusion due to herpes zoster as the initial presenting sign in a patient with acquired immunodeficiency syndrome (AIDS). Ocul Immunol Inflamm 2001; 9:125-30. [PMID: 11449328 DOI: 10.1076/ocii.9.2.125.3976] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Central retinal vein occlusion (CRVO) due to herpes zoster has rarely been reported. Varicella zoster virus is a common opportunistic infection in patients with AIDS. This case report is about a 40-year-old man with herpes zoster ophthalmicus and central retinal vein occlusion of the right eye who is HIV-positive. Although the lesion resolved following treatment with intravenous acyclovir and oral steroid, the patient subsequently developed florid disc neovascularization and vitreous hemorrhage. The paper highlights CRVO as the initial presentation in an AIDS patient with herpes zoster ophthalmicus.
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Affiliation(s)
- J Biswas
- Medical and Vision Research Foundation, Chennai, India.
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