1
|
Gaidar D, Jonas A, Akulenko R, Ruffing U, Herrmann M, Helms V, von Müller L. Analysis of the dynamics of Staphylococcus aureus binding to white blood cells using whole blood assay and geno-to-pheno mapping. Int J Med Microbiol 2020; 310:151411. [DOI: 10.1016/j.ijmm.2020.151411] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Revised: 12/02/2019] [Accepted: 02/03/2020] [Indexed: 12/28/2022] Open
|
2
|
Vubil D, Garrine M, Ruffing U, Acácio S, Sigaúque B, Alonso PL, von Müller L, Herrmann M, Mandomando I. Molecular Characterization of Community Acquired Staphylococcus aureus Bacteremia in Young Children in Southern Mozambique, 2001-2009. Front Microbiol 2017; 8:730. [PMID: 28522992 PMCID: PMC5415612 DOI: 10.3389/fmicb.2017.00730] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Accepted: 04/07/2017] [Indexed: 01/15/2023] Open
Abstract
Background: The emergence of community-acquired Staphylococcus aureus infections is increasingly recognized as life threating problem worldwide. In Manhiça district, southern Mozambique, S. aureus is the leading cause of community-acquired bacteremia in neonates. Methods: Eighty-four S. aureus isolates from children less than 5 years admitted to Manhiça District Hospital from 2001 to 2009 were randomly selected and genetically characterized by DNA microarray and spa typing. Antimicrobial susceptibility was determined by VITEK 2. Results: Thirty-eight different spa types and 14 clonal complexes (CC) were identified. Spa-type t084 (n = 10; 12%) was the most predominant while CC8 (n = 18; 21%) and CC15 (n = 14; 16%) were the most frequent CCs. Mortality tended to be higher among children infected with CC45 (33.3%, 1/3) and CC8 (27.8%, 5/18). The majority of isolates possessed the accessory gene regulator I (45%) and belonged to either capsule type 8 (52%) or 5 (47%). Panton valentine leukocidin (PVL) encoding genes were detected in 30%. Antibiotic resistance was high for penicillin (89%), tetracycline (59%) and Trimethoprim Sulfamethoxazole (36%) while MRSA was uncommon (8%). Conclusions: Although MRSA were uncommon, we found high genetic diversity of methicillin susceptible S. aureus causing bacteremia in Mozambican children, associated with high resistance to the most available antibiotics in this community. Some CCs are likely to be more lethal indicating the need for prompt recognition and appropriate treatment.
Collapse
Affiliation(s)
- Delfino Vubil
- Centro de Investigação em Saúde de Manhiça (CISM)Maputo, Mozambique
| | | | - Ulla Ruffing
- Institute of Medical Microbiology and Hygiene, University of SaarlandHomburg, Germany
| | - Sozinho Acácio
- Centro de Investigação em Saúde de Manhiça (CISM)Maputo, Mozambique.,Instituto Nacional de Saúde (INS), Ministério da SaúdeMaputo, Mozambique
| | - Betuel Sigaúque
- Centro de Investigação em Saúde de Manhiça (CISM)Maputo, Mozambique.,Instituto Nacional de Saúde (INS), Ministério da SaúdeMaputo, Mozambique
| | - Pedro L Alonso
- Centro de Investigação em Saúde de Manhiça (CISM)Maputo, Mozambique.,Barcelona Institute of Global HealthBarcelona, Spain
| | - Lutz von Müller
- Institute of Medical Microbiology and Hygiene, University of SaarlandHomburg, Germany
| | - Mathias Herrmann
- Institute of Medical Microbiology and Hygiene, University of SaarlandHomburg, Germany
| | - Inácio Mandomando
- Centro de Investigação em Saúde de Manhiça (CISM)Maputo, Mozambique.,Instituto Nacional de Saúde (INS), Ministério da SaúdeMaputo, Mozambique
| |
Collapse
|
3
|
Mardal M, Bischoff M, Ibáñez M, Ruffing U, Hernández F, Meyer MR. Microbial biotransformation of five pyrrolidinophenone-type psychoactive substances in wastewater and a wastewater isolatedPseudomonas putidastrain. Drug Test Anal 2017; 9:1522-1536. [DOI: 10.1002/dta.2165] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Revised: 01/12/2017] [Accepted: 01/12/2017] [Indexed: 12/24/2022]
Affiliation(s)
- Marie Mardal
- Department of Experimental and Clinical Toxicology, Institute of Experimental and Clinical Pharmacology and Toxicology; Saarland University; Homburg Germany
| | - Markus Bischoff
- Institute of Medical Microbiology and Hygiene; Saarland University; Homburg (Saar) Germany
| | - María Ibáñez
- Research Institute for Pesticides and Water; University Jaume I; Castellón Spain
| | - Ulla Ruffing
- Institute of Medical Microbiology and Hygiene; Saarland University; Homburg (Saar) Germany
| | - Félix Hernández
- Research Institute for Pesticides and Water; University Jaume I; Castellón Spain
| | - Markus R. Meyer
- Department of Experimental and Clinical Toxicology, Institute of Experimental and Clinical Pharmacology and Toxicology; Saarland University; Homburg Germany
| |
Collapse
|
4
|
Ruffing U, Alabi A, Kazimoto T, Vubil DC, Akulenko R, Abdulla S, Alonso P, Bischoff M, Germann A, Grobusch MP, Helms V, Hoffmann J, Kern WV, Kremsner PG, Mandomando I, Mellmann A, Peters G, Schaumburg F, Schubert S, Strauß L, Tanner M, Briesen HV, Wende L, Müller LV, Herrmann M. Community-Associated Staphylococcus aureus from Sub-Saharan Africa and Germany: A Cross-Sectional Geographic Correlation Study. Sci Rep 2017; 7:154. [PMID: 28273954 PMCID: PMC5428059 DOI: 10.1038/s41598-017-00214-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Accepted: 02/14/2017] [Indexed: 01/29/2023] Open
Abstract
Clonal clusters and gene repertoires of Staphylococcus aureus are essential to understand disease and are well characterized in industrialized countries but poorly analysed in developing regions. The objective of this study was to compare the molecular-epidemiologic profiles of S. aureus isolates from Sub-Saharan Africa and Germany. S. aureus isolates from 600 staphylococcal carriers and 600 patients with community-associated staphylococcal disease were characterized by DNA hybridization, clonal complex (CC) attribution, and principal component (PCA)-based gene repertoire analysis. 73% of all CCs identified representing 77% of the isolates contained in these CCs were predominant in either African or German region. Significant differences between African versus German isolates were found for alleles encoding the accessory gene regulator type, enterotoxins, the Panton-Valentine leukocidin, immune evasion gene cluster, and adhesins. PCA in conjunction with silhouette analysis distinguished nine separable PCA clusters, with five clusters primarily comprising of African and two clusters of German isolates. Significant differences between S. aureus lineages in Africa and Germany may be a clue to explain the apparent difference in disease between tropical/(so-called) developing and temperate/industrialized regions. In low-resource countries further clinical-epidemiologic research is warranted not only for neglected tropical diseases but also for major bacterial infections.
Collapse
Affiliation(s)
- Ulla Ruffing
- Institute of Medical Microbiology and Hygiene, Saarland University, Homburg, Germany
| | - Abraham Alabi
- Centre de Recherches Médicales de Lambaréné (CERMEL), Albert Schweitzer Hospital, Lambaréné, Gabon
| | - Theckla Kazimoto
- Ifakara Health Research and Development Centre (IHRDC), Dar es Salaam, Tanzania
| | - Delfino C Vubil
- Manhiça Health Research Center, Manhiça, Manhiça, Mozambique
| | - Ruslan Akulenko
- Center for Bioinformatics, Saarland University, Saarbrücken, Germany
| | - Salim Abdulla
- Ifakara Health Research and Development Centre (IHRDC), Dar es Salaam, Tanzania
| | - Pedro Alonso
- Manhiça Health Research Center, Manhiça, Manhiça, Mozambique.,Department of Public Health, University of Barcelona, Barcelona, Spain
| | - Markus Bischoff
- Institute of Medical Microbiology and Hygiene, Saarland University, Homburg, Germany
| | - Anja Germann
- Fraunhofer Institute for Biomedical Engineering, St. Ingbert, Germany
| | - Martin P Grobusch
- Centre de Recherches Médicales de Lambaréné (CERMEL), Albert Schweitzer Hospital, Lambaréné, Gabon.,Center of Tropical Medicine and Travel Medicine, Department of Infectious Diseases, Division of Internal Medicine, University of Amsterdam, Amsterdam, The Netherlands
| | - Volkhard Helms
- Center for Bioinformatics, Saarland University, Saarbrücken, Germany
| | - Jonas Hoffmann
- Division of Infectious Diseases and Travel Medicine, University of Freiburg, Freiburg, Germany
| | - Winfried V Kern
- Division of Infectious Diseases and Travel Medicine, University of Freiburg, Freiburg, Germany
| | - Peter G Kremsner
- Centre de Recherches Médicales de Lambaréné (CERMEL), Albert Schweitzer Hospital, Lambaréné, Gabon.,Institute of Tropical Medicine, University of Tübingen, Deutsches Zentrum für Infektionsforschung, Tübingen, Germany
| | | | | | - Georg Peters
- Institute of Medical Microbiology, University Hospital Münster, Münster, Germany
| | - Frieder Schaumburg
- Institute of Medical Microbiology, University Hospital Münster, Münster, Germany
| | - Sabine Schubert
- Institute of Medical Microbiology and Hygiene, Saarland University, Homburg, Germany
| | - Lena Strauß
- Institute of Hygiene, University Hospital Münster, Münster, Germany
| | - Marcel Tanner
- Ifakara Health Research and Development Centre (IHRDC), Dar es Salaam, Tanzania.,Swiss Tropical and Public Health Institute, Basel, Switzerland
| | - Hagen von Briesen
- Fraunhofer Institute for Biomedical Engineering, St. Ingbert, Germany
| | - Laura Wende
- Institute of Medical Microbiology and Hygiene, Saarland University, Homburg, Germany
| | - Lutz von Müller
- Institute of Medical Microbiology and Hygiene, Saarland University, Homburg, Germany
| | - Mathias Herrmann
- Institute of Medical Microbiology and Hygiene, Saarland University, Homburg, Germany.
| |
Collapse
|
5
|
Shittu AO, Oyedara O, Okon K, Raji A, Peters G, von Müller L, Schaumburg F, Herrmann M, Ruffing U. An assessment on DNA microarray and sequence-based methods for the characterization of methicillin-susceptible Staphylococcus aureus from Nigeria. Front Microbiol 2015; 6:1160. [PMID: 26539185 PMCID: PMC4612102 DOI: 10.3389/fmicb.2015.01160] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Accepted: 10/05/2015] [Indexed: 11/17/2022] Open
Abstract
Staphylococcus aureus is an important human pathogen causing nosocomial and community-acquired infections worldwide. In the characterization of this opportunistic pathogen, DNA microarray hybridization technique is used as an alternative to sequence based genotyping to obtain a comprehensive assessment on the virulence, resistance determinants, and population structure. The objective of this study was to characterize a defined collection of S. aureus isolates from Nigeria using the microarray technique, and to assess the extent that it correlates with sequence-based genotyping methods. The clonal diversity and genomic content of 52 methicillin-susceptible Staphylococcus aureus (MSSA) were investigated by spa typing, MLST and DNA microarray hybridization. More than half (55.8%) of these isolates were associated with clonal complexes (CCs) typically associated with methicillin-resistant S. aureus (MRSA) clones i.e., CC1, CC5, CC8, CC30, and CC45. Certain genes linked with virulence (hlgA and clfA) and adherence (ebpS, fnbA, sspA, sspB, and sspP) were detected in all isolates. A number of genes or gene clusters were associated with distinct clonal types. The enterotoxin gene cluster (egc) was linked with CC5, CC25, CC30, CC45, and CC121, enterotoxin H gene (seh) with CC1, exfoliative toxin D gene (etd) with CC25 and CC80, and the epidermal cell differentiation inhibitor B gene (edinB) with CC25, CC80, and CC152. The excellent agreement between data from DNA microarray and MLST in the delineation of Nigerian MSSA isolates indicates that the microarray technique is a useful tool to provide information on antibiotic resistance, clonal diversity and virulence factors associated with infection and disease.
Collapse
Affiliation(s)
- Adebayo O Shittu
- Department of Microbiology, Obafemi Awolowo University Ile-Ife, Nigeria ; Institute of Medical Microbiology and Hygiene, Saarland University Homburg, Germany
| | - Omotayo Oyedara
- Department of Biological Sciences, College of Science, Engineering and Technology, Osun State University Osogbo, Nigeria
| | - Kenneth Okon
- Department of Medical Laboratory Services, Federal Medical Centre Makurdi, Nigeria
| | - Adeola Raji
- Department of Microbiology and Immunology, Alfaisal University Riyadh, Saudi Arabia
| | - Georg Peters
- Institute of Medical Microbiology, University Hospital Münster Münster, Germany
| | - Lutz von Müller
- Institute of Medical Microbiology and Hygiene, Saarland University Homburg, Germany
| | - Frieder Schaumburg
- Institute of Medical Microbiology, University Hospital Münster Münster, Germany
| | - Mathias Herrmann
- Institute of Medical Microbiology and Hygiene, Saarland University Homburg, Germany
| | - Ulla Ruffing
- Institute of Medical Microbiology and Hygiene, Saarland University Homburg, Germany
| |
Collapse
|
6
|
Hamed M, Nitsche-Schmitz DP, Ruffing U, Steglich M, Dordel J, Nguyen D, Brink JH, Chhatwal GS, Herrmann M, Nübel U, Helms V, von Müller L. Whole genome sequence typing and microarray profiling of nasal and blood stream methicillin-resistant Staphylococcus aureus isolates: Clues to phylogeny and invasiveness. Infect Genet Evol 2015; 36:475-482. [PMID: 26297907 DOI: 10.1016/j.meegid.2015.08.020] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Revised: 08/11/2015] [Accepted: 08/18/2015] [Indexed: 11/29/2022]
Abstract
Hospital-associated methicillin-resistant Staphylococcus aureus (MRSA) infections are frequently caused by predominant clusters of closely related isolates that cannot be discriminated by conventional diagnostic typing methods. Whole genome sequencing (WGS) and DNA microarray (MA) now allow for better discrimination within a prevalent clonal complex (CC). This single center exploratory study aims to distinguish invasive (blood stream infection) and non-invasive (nasal colonization) MRSA isolates of the same CC5 into phylogenetic- and virulence-associated genotypic subgroups by WGS and MA. A cohort of twelve blood stream and fifteen nasal MRSA isolates of CC5 (spa-types t003 and t504) was selected. Isolates were propagated at the same period of time from unrelated patients treated at the University of Saarland Medical Center, Germany. Rooted phylotyping based on WGS with core-genome single nucleotide polymorphism (SNP) analysis revealed two local clusters of closely related CC5 subgroups (t504 and Clade1 t003) which were separated from other local t003 isolates and from unrelated CC5 MRSA reference isolates of German origin. Phylogenetic subtyping was not associated with invasiveness when comparing blood stream and nasal isolates. Clustering based on MA profiles was not concordant with WGS phylotyping, but MA profiles may identify subgroups of isolates with nasal and blood stream origin. Among the new putative virulence associated genes identified by WGS, the strongest association with blood stream infections was shown for ebhB mutants. Analysis of the core-genome together with the accessory genome enables subtyping of closely related MRSA isolates according to phylogeny and presumably also to the potential virulence capacity of isolates.
Collapse
Affiliation(s)
- Mohamed Hamed
- Center for Bioinformatics, Saarland University, Saarbruecken, Germany
| | | | - Ulla Ruffing
- Institute of Medical Microbiology and Hygiene, University of Saarland Medical Center, Homburg, Germany
| | | | | | - Duy Nguyen
- Center for Bioinformatics, Saarland University, Saarbruecken, Germany
| | - Jan-Hendrik Brink
- Institute of Medical Microbiology and Hygiene, University of Saarland Medical Center, Homburg, Germany
| | - Gursharan Singh Chhatwal
- Department of Medical Microbiology, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany
| | - Mathias Herrmann
- Institute of Medical Microbiology and Hygiene, University of Saarland Medical Center, Homburg, Germany
| | | | - Volkhard Helms
- Center for Bioinformatics, Saarland University, Saarbruecken, Germany
| | - Lutz von Müller
- Institute of Medical Microbiology and Hygiene, University of Saarland Medical Center, Homburg, Germany.
| |
Collapse
|
7
|
Ballhausen B, Jung P, Kriegeskorte A, Makgotlho PE, Ruffing U, von Müller L, Köck R, Peters G, Herrmann M, Ziebuhr W, Becker K, Bischoff M. LA-MRSA CC398 differ from classical community acquired-MRSA and hospital acquired-MRSA lineages: functional analysis of infection and colonization processes. Int J Med Microbiol 2014; 304:777-86. [PMID: 25034858 DOI: 10.1016/j.ijmm.2014.06.006] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
Abstract
Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) of the clonal complex (CC) 398 became primarily known as colonizers of livestock animals. In the past few years, they have been increasingly introduced into hospitals with subsequent emergence of human infections. However, the (re-)adaptation to the human host is only incompletely understood. This study aimed to assess virulence properties of LA-MRSA CC398 by functional modeling of infection and colonization processes. A selection of 15 human LA-MRSA CC398 isolates and 11 pig-colonizing isolates were characterized regarding their virulence capacities and compared with human isolates of hospital-acquired (HA)-MRSA (CC5, CC22 and CC45) and community-associated (CA)-MRSA (CC8, CC30 and CC80) clonal lineages. Our investigations demonstrated that LA-MRSA CC398 adhered less efficient to human cells and human/bovine plasma fibronectin than CA-MRSA and HA-MRSA isolates. In contrast, the LA-MRSA CC398 isolates revealed a high cytotoxic potential comparable to certain CA-MRSA. Comparing the most prevalent LA-MRSA CC398 spa types (t011, t034, t108), isolates associated with spa t108 showed an increased adhesive and invasive potential paired with an increased ability to evade phagocytosis. The results underline both the pathogenic potential of LA-MRSA in general and the heterogeneity within the CC398 clade regarding the virulence characteristics of CC398 subpopulations. Assuming an ongoing (re-)adaptation to the human host combined with a huge reservoir of LA-MRSA CC398 in livestock and constant zoonotic transmission, the LA-MRSA CC398 lineage has the potential to pose a serious threat to human health.
Collapse
Affiliation(s)
- Britta Ballhausen
- Institute of Medical Microbiology, University Hospital of Münster, Münster, Germany
| | - Philipp Jung
- Institute of Medical Microbiology and Hygiene, University of Saarland Hospital, Homburg/Saar, Germany
| | - André Kriegeskorte
- Institute of Medical Microbiology, University Hospital of Münster, Münster, Germany
| | | | - Ulla Ruffing
- Institute of Medical Microbiology and Hygiene, University of Saarland Hospital, Homburg/Saar, Germany
| | - Lutz von Müller
- Institute of Medical Microbiology and Hygiene, University of Saarland Hospital, Homburg/Saar, Germany
| | - Robin Köck
- Institute of Hygiene, University Hospital of Münster, Münster, Germany
| | - Georg Peters
- Institute of Medical Microbiology, University Hospital of Münster, Münster, Germany
| | - Mathias Herrmann
- Institute of Medical Microbiology and Hygiene, University of Saarland Hospital, Homburg/Saar, Germany
| | - Wilma Ziebuhr
- Institute for Molecular Infection Biology, University of Würzburg, Würzburg, Germany
| | - Karsten Becker
- Institute of Medical Microbiology, University Hospital of Münster, Münster, Germany.
| | - Markus Bischoff
- Institute of Medical Microbiology and Hygiene, University of Saarland Hospital, Homburg/Saar, Germany
| |
Collapse
|
8
|
Obisesan T, Ruffing U, Nimmesgern A, Herrmann M, Müller L, Shittu A. Identification of mannitol positive coagulase negative staphylococci from poultry litter in Nigeria. Int J Infect Dis 2014. [DOI: 10.1016/j.ijid.2014.03.1199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
|
9
|
Herrmann M, Abdullah S, Alabi A, Alonso P, Friedrich AW, Fuhr G, Germann A, Kern WV, Kremsner PG, Mandomando I, Mellmann AC, Pluschke G, Rieg S, Ruffing U, Schaumburg F, Tanner M, Peters G, von Briesen H, von Eiff C, von Müller L, Grobusch MP. Staphylococcal disease in Africa: another neglected ‘tropical’ disease. Future Microbiol 2013; 8:17-26. [DOI: 10.2217/fmb.12.126] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
The term ‘neglected tropical diseases’ predominantly refers to single-entity, mostly parasitic diseases. However, a considerable morbidity and mortality burden is carried by patients infected with Gram-positive cocci and Gram-negative bacilli that are prevalent all over the world, yet have impact in tropical and developing countries, particularly in children, with much higher incidence rates than those reported from developed countries. Staphylococcus aureus is among these pathogens. The African–German StaphNet consortium uses microbiological characterization of African S. aureus isolates, including identification of virulence factors, alongside the gathering of epidemiological and clinical data in an innovative research network between a European country (Germany) and several African partners. By creating an accessible strain repository and by implementing personnel training and capacity building, this network aims to put staphylococcal disease on the international agenda as a truly neglected condition with a major global impact on public health.
Collapse
Affiliation(s)
- Mathias Herrmann
- Institute of Medical Microbiology & Hygiene, University of Saarland Medical Center, Homburg, Germany
| | - Salim Abdullah
- Ifakara Health Research & Development Center, Bagamoyo, Tanzania
| | - Abraham Alabi
- Medical Research Unit, Albert Schweitzer Hospital, Lambaréné, Gabon
| | - Pedro Alonso
- Barcelona Centre for International Health Research (Hospital Clínic-Universitat de Barcelona), Barcelona, Spain
- Manhiça Health & Research Center, Maputo, Mozambique
| | - Alexander W Friedrich
- Department of Medical Microbiology, University Hospital Groningen, Groningen, The Netherlands
| | - Günther Fuhr
- Fraunhofer Institute for Biomedical Engineering, St Ingbert, Germany
| | - Anja Germann
- Fraunhofer Institute for Biomedical Engineering, St Ingbert, Germany
| | - Winfried V Kern
- Division of Infectious Diseases, Department of Medicine, University of Freiburg, Freiburg, Germany
| | - Peter G Kremsner
- Medical Research Unit, Albert Schweitzer Hospital, Lambaréné, Gabon
- Institute of Tropical Medicine, University of Tübingen, Tübingen, Germany
| | - Inacio Mandomando
- Manhiça Health & Research Center, Maputo, Mozambique
- Instituto Nacional de Saúde, Ministério da Saúde, Maputo, Mozambique
| | | | - Gerd Pluschke
- Swiss Tropical & Public Health Institute & University of Basel, Switzerland
| | - Siegbert Rieg
- Division of Infectious Diseases, Department of Medicine, University of Freiburg, Freiburg, Germany
| | - Ulla Ruffing
- Institute of Medical Microbiology & Hygiene, University of Saarland Medical Center, Homburg, Germany
| | - Frieder Schaumburg
- Medical Research Unit, Albert Schweitzer Hospital, Lambaréné, Gabon
- Institute of Medical Microbiology, University of Münster, Münster, Germany
| | - Marcel Tanner
- Swiss Tropical & Public Health Institute & University of Basel, Switzerland
| | - Georg Peters
- Institute of Medical Microbiology, University of Münster, Münster, Germany
| | - Hagen von Briesen
- Fraunhofer Institute for Biomedical Engineering, St Ingbert, Germany
| | - Christof von Eiff
- Institute of Medical Microbiology, University of Münster, Münster, Germany
| | - Lutz von Müller
- Institute of Medical Microbiology & Hygiene, University of Saarland Medical Center, Homburg, Germany
| | - Martin P Grobusch
- Center for Tropical Medicine & Travel Medicine, Department of Infectious Diseases, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands
| |
Collapse
|
10
|
Ruffing U, Akulenko R, Bischoff M, Helms V, Herrmann M, von Müller L. Matched-cohort DNA microarray diversity analysis of methicillin sensitive and methicillin resistant Staphylococcus aureus isolates from hospital admission patients. PLoS One 2012; 7:e52487. [PMID: 23285062 PMCID: PMC3527544 DOI: 10.1371/journal.pone.0052487] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2012] [Accepted: 11/13/2012] [Indexed: 12/03/2022] Open
Abstract
As genotyping of S. aureus is important for epidemiologic research and for hygiene management, methods are required for standardized fast and easily applicable evaluation of closely related epidemic strains with high prevalence in hospitals. In this single centre matched control study we compared a new commercially available DNA microarray (IdentiBAC) with standard spa-typing for S. aureus genotyping. Included in the study was a subgroup of 46 MRSA and matched 46 MSSA nasal isolates of the Saarland University Medical Center collected during a state-wide admission prevalence screening. Microarray (MA) and also spa-typing could easily differentiate the genetically diverse MSSA group. However, due to the predominance of CC5/t003 in the MRSA group a sufficient subtyping required analysis of more complex genetic profiles as was shown here by the MA comprising a total number of 334 different hybridization probes. The genetic repertoire of the MRSA group was characterized by more virulence genes as compared to the MSSA group. The standard evaluation of MA results by the original software into CCs, agr-, SCCmec- and capsule-types was substituted in the present study by implementation of multivariate subtyping of closely related CC5 isolates using three different bioinformatic methods (splits graph, cluster dendrogram, and principal component analysis). Each method used was applicable for standardized and highly discriminative subtyping with high concordance. We propose that the identified S. aureus subtypes with characteristic virulence gene profiles are presumably associated also with virulence and pathogenicity in vivo; however, this remains to be analyzed in future studies. MA was superior to spa-typing for epidemiologic and presumably also provide functional respectively virulence associated characterization of S. aureus isolates. This is of specific importance for the hospital setting. In future, MA could become a new standard test for S. aureus typing in combination with multivariate bioinformatic analysis.
Collapse
Affiliation(s)
- Ulla Ruffing
- Institute of Medical Microbiology and Hygiene, Saarland University Medical Center, Homburg/Saar, Germany
| | - Ruslan Akulenko
- Center for Bioinformatics, Saarland University, Saarbrücken, Germany
| | - Markus Bischoff
- Institute of Medical Microbiology and Hygiene, Saarland University Medical Center, Homburg/Saar, Germany
| | - Volkhard Helms
- Center for Bioinformatics, Saarland University, Saarbrücken, Germany
| | - Mathias Herrmann
- Institute of Medical Microbiology and Hygiene, Saarland University Medical Center, Homburg/Saar, Germany
| | - Lutz von Müller
- Institute of Medical Microbiology and Hygiene, Saarland University Medical Center, Homburg/Saar, Germany
- * E-mail:
| |
Collapse
|
11
|
Mannowetz N, Wandernoth P, Hornung J, Ruffing U, Raubuch M, Wennemuth G. Early activation of sperm by HCO3− is regulated hormonally in the murine uterus. ACTA ACUST UNITED AC 2010; 34:153-64. [DOI: 10.1111/j.1365-2605.2010.01067.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
|