1
|
Redding LE, Tu V, Abbas A, Alvarez M, Zackular JP, Gu C, Bushman FD, Kelly DJ, Barnhart D, Lee JJ, Bittinger KL. Genetic and phenotypic characteristics of Clostridium (Clostridioides) difficile from canine, bovine, and pediatric populations. Anaerobe 2022; 74:102539. [PMID: 35217150 PMCID: PMC9359814 DOI: 10.1016/j.anaerobe.2022.102539] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 02/02/2022] [Accepted: 02/17/2022] [Indexed: 12/15/2022]
Abstract
Objectives: Carriage of Clostridioides difficile by different species of animals has led to speculation that animals could represent a reservoir of this pathogen for human infections. The objective of this study was to compare C. difficile isolates from humans, dogs, and cattle from a restricted geographic area. Methods: C. difficile isolates from 36 dogs and 15 dairy calves underwent whole genome sequencing, and phenotypic assays assessing growth and virulence were performed. Genomes of animal-derived isolates were compared to 29 genomes of isolates from a pediatric population as well as 44 reference genomes. Results: Growth rates and relative cytotoxicity of isolates were significantly higher and lower, respectively, in bovine-derived isolates compared to pediatric- and canine-derived isolates. Analysis of core genes showed clustering by host species, though in a few cases, human strains co-clustered with canine or bovine strains, suggesting possible interspecies transmission. Geographic differences (e.g., farm, litter) were small compared to differences between species. In an analysis of accessory genes, the total number of genes in each genome varied between host species, with 6.7% of functional orthologs differentially present/absent between host species and bovine-derived strains having the lowest number of genes. Canine-derived isolates were most likely to be non-toxigenic and more likely to carry phages. A targeted study of episomes identified in local pediatric strains showed sharing of a methicillin-resistance plasmid with dogs, and historic sharing of a wide range of episomes across hosts. Bovine-derived isolates harbored the widest variety of antibiotic-resistance genes, followed by canine Conclusions: While C. difficile isolates mostly clustered by host species, occasional co-clustering of canine and pediatric-derived isolates suggests the possibility of interspecies transmission. The presence of a pool of resistance genes in animal-derived isolates with the potential to appear in humans given sufficient pressure from antibiotic use warrants concern.
Collapse
Affiliation(s)
- L E Redding
- Department of Clinical Studies-New Bolton Center, University of Pennsylvania, School of Veterinary Medicine, Kennett Square, PA, 19348, USA.
| | - V Tu
- Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, PA, 19104, USA
| | - A Abbas
- Division of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
| | - M Alvarez
- Division of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA
| | - J P Zackular
- Division of Protective Immunity, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA; Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - C Gu
- Department of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - F D Bushman
- Department of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - D J Kelly
- Department of Clinical Studies-New Bolton Center, University of Pennsylvania, School of Veterinary Medicine, Kennett Square, PA, 19348, USA
| | - D Barnhart
- Department of Clinical Studies-New Bolton Center, University of Pennsylvania, School of Veterinary Medicine, Kennett Square, PA, 19348, USA
| | - J J Lee
- Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, PA, 19104, USA
| | - K L Bittinger
- Division of Gastroenterology, Hepatology, and Nutrition, Children's Hospital of Philadelphia, PA, 19104, USA
| |
Collapse
|
2
|
Bristow TF, Grotzinger JP, Rampe EB, Cuadros J, Chipera SJ, Downs GW, Fedo CM, Frydenvang J, McAdam AC, Morris RV, Achilles CN, Blake DF, Castle N, Craig P, Des Marais DJ, Downs RT, Hazen RM, Ming DW, Morrison SM, Thorpe MT, Treiman AH, Tu V, Vaniman DT, Yen AS, Gellert R, Mahaffy PR, Wiens RC, Bryk AB, Bennett KA, Fox VK, Millken RE, Fraeman AA, Vasavada AR. Brine-driven destruction of clay minerals in Gale crater, Mars. Science 2021; 373:198-204. [PMID: 34244410 DOI: 10.1126/science.abg5449] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Accepted: 05/28/2021] [Indexed: 11/02/2022]
Abstract
Mars' sedimentary rock record preserves information on geological (and potential astrobiological) processes that occurred on the planet billions of years ago. The Curiosity rover is exploring the lower reaches of Mount Sharp, in Gale crater on Mars. A traverse from Vera Rubin ridge to Glen Torridon has allowed Curiosity to examine a lateral transect of rock strata laid down in a martian lake ~3.5 billion years ago. We report spatial differences in the mineralogy of time-equivalent sedimentary rocks <400 meters apart. These differences indicate localized infiltration of silica-poor brines, generated during deposition of overlying magnesium sulfate-bearing strata. We propose that destabilization of silicate minerals driven by silica-poor brines (rarely observed on Earth) was widespread on ancient Mars, because sulfate deposits are globally distributed.
Collapse
Affiliation(s)
- T F Bristow
- Eobiology Branch, NASA Ames Research Center, Moffett Field, CA 94035, USA.
| | - J P Grotzinger
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA
| | - E B Rampe
- Astromaterials Research and Exploration Science Division, NASA Johnson Space Center, Houston, TX 77058, USA
| | - J Cuadros
- Department of Earth Sciences, Natural History Museum, London SW7 5BD, UK
| | - S J Chipera
- Planetary Science Institute, Tucson, AZ 85719, USA
| | - G W Downs
- Department of Geosciences, University of Arizona, Tucson, AZ 85721, USA
| | - C M Fedo
- Department of Earth and Planetary Sciences, University of Tennessee, Knoxville, TN 37996, USA
| | - J Frydenvang
- Globe Institute, University of Copenhagen, Copenhagen, Denmark
| | - A C McAdam
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA
| | - R V Morris
- Astromaterials Research and Exploration Science Division, NASA Johnson Space Center, Houston, TX 77058, USA
| | - C N Achilles
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA
| | - D F Blake
- Eobiology Branch, NASA Ames Research Center, Moffett Field, CA 94035, USA
| | - N Castle
- Planetary Science Institute, Tucson, AZ 85719, USA
| | - P Craig
- Planetary Science Institute, Tucson, AZ 85719, USA
| | - D J Des Marais
- Eobiology Branch, NASA Ames Research Center, Moffett Field, CA 94035, USA
| | - R T Downs
- Department of Geosciences, University of Arizona, Tucson, AZ 85721, USA
| | - R M Hazen
- Earth and Planets Laboratory, Carnegie Institution for Science, Washington, DC 20015, USA
| | - D W Ming
- Astromaterials Research and Exploration Science Division, NASA Johnson Space Center, Houston, TX 77058, USA
| | - S M Morrison
- Earth and Planets Laboratory, Carnegie Institution for Science, Washington, DC 20015, USA
| | - M T Thorpe
- Jacobs Technology-Jacobs JETS Contract, Astromaterials Research and Exploration Science Division, at NASA Johnson Space Center, Houston, TX 77058, USA
| | - A H Treiman
- Lunar and Planetary Institute, Universities Space Research Association, Houston, TX 77058, USA
| | - V Tu
- Jacobs Technology-Jacobs JETS Contract, Astromaterials Research and Exploration Science Division, at NASA Johnson Space Center, Houston, TX 77058, USA
| | - D T Vaniman
- Planetary Science Institute, Tucson, AZ 85719, USA
| | - A S Yen
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA
| | - R Gellert
- Department of Physics, University of Guelph, Guelph, Ontario N1G 2W1, Canada
| | - P R Mahaffy
- Solar System Exploration Division, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA
| | - R C Wiens
- Los Alamos National Laboratory, Los Alamos, NM 87545, USA
| | - A B Bryk
- Department of Earth and Planetary Science, University of California Berkeley, Berkeley, CA 94720, USA
| | - K A Bennett
- U.S. Geological Survey, Astrogeology Science Center, Flagstaff, AZ 86001, USA
| | - V K Fox
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA
| | - R E Millken
- Department of Earth, Environmental Sciences and Planetary Sciences, Brown University, Providence, RI 02912, USA
| | - A A Fraeman
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA
| | - A R Vasavada
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, USA
| |
Collapse
|