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Sen P, Ghosh SS. γ-Secretase Inhibitor Potentiates the Activity of Suberoylanilide Hydroxamic Acid by Inhibiting Its Ability to Induce Epithelial to Mesenchymal Transition and Stemness via Notch Pathway Activation in Triple-Negative Breast Cancer Cells. ACS Pharmacol Transl Sci 2023; 6:1396-1415. [PMID: 37854616 PMCID: PMC10580388 DOI: 10.1021/acsptsci.3c00099] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Indexed: 10/20/2023]
Abstract
Histone deacetylase inhibitors, such as suberoylanilide hydroxamic acid (SAHA), possess great therapeutic value for triple-negative breast cancer patients. However, their inherent ability to induce epithelial to mesenchymal transition in various malignancies has been of greater concern. Herein, we hypothesize that SAHA facilitates epithelial to mesenchymal transition (EMT) via activation of the Notch pathway. From the literature survey, it is evident that histone deacetylase mediates the formation of the co-repressor complex upon interacting with the DNA binding domain, thereby inhibiting the transcription of the Notch downstream genes. Hence, we hypothesize that the use of SAHA facilitates the transcriptional activation of the Notch target genes, by disrupting the co-repressor complex and recruiting the coactivator complex, thereby facilitating EMT. In this study, we have observed that SAHA upregulates the expression profile of the Notch downstream proteins (such as Notch intracellular domain, Hes-1, c-Myc, etc.) and the Notch ligands (such as Jagged-1 and Jagged-2), thereby aberrantly activating the signaling pathway. Therefore, we have focused on combination therapy using a γ-secretase inhibitor LY411575 that would enhance the efficacy of SAHA by blocking the canonical Notch pathway mediated via its intracellular domain. It was observed that co-treatment significantly mediates apoptosis, generates cellular reactive oxygen species, depolarizes mitochondria, and diminishes the stemness properties. Besides, it also mediates autophagy-independent cell death and diminishes the expression of inflammatory cytokines, along with the downregulation in the expression of the Notch downstream genes and mesenchymal markers. Altogether, our study provides a mechanistic basis for combating EMT potentiated by SAHA, which could be utilized as a rational strategy for the treatment of solid tumors, especially triple-negative breast cancer.
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Affiliation(s)
- Plaboni Sen
- Department
of Biosciences and Bioengineering, Indian
Institute of Technology Guwahati, Guwahati 781039, Assam, India
| | - Siddhartha Sankar Ghosh
- Department
of Biosciences and Bioengineering, Indian
Institute of Technology Guwahati, Guwahati 781039, Assam, India
- Centre
for Nanotechnology, Indian Institute of
Technology Guwahati, Guwahati 781039, Assam, India
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2
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Debnath S, Rajalakshmi VS, Kumar D, Das B, Vasudev PG, Satpati P, Chatterjee S. Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3 10 Helices. ACS Omega 2023; 8:36370-36385. [PMID: 37810672 PMCID: PMC10552473 DOI: 10.1021/acsomega.3c05124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 08/29/2023] [Indexed: 10/10/2023]
Abstract
Chirality is an omnipresent feature in nature's architecture starting from simple molecules like amino acids to complex higher-order structures viz. proteins, DNA, and RNA. The L configuration of proteinogenic amino acids gives rise to right-handed helices. Ambidexterity is as rare in organisms as in molecules. There are only a few reports of ambidexterity in single-peptide molecules composed of either mixed L and D or achiral residues. Here, we report, for the first time, the ambidextrous and left-handed helical conformations in the chiral nonapeptides P1-P3 (Boc-LUVUγx,xULUV-OMe where U = Aib, x,x = 2,2/3,3/4,4), containing chiral L α amino acid residues, in addition to the usually observed right-handed helical conformation. The centrally located achiral γ residue, capable of adopting both left and right-handed helical conformations, induces its handedness on the neighboring chiral and achiral residues, leading to the observation of both left and right-handed helices in P2 and P3. The presence of a single water molecule proximal to the γ residue induces the reversal of helix handedness by forming distinct and stable water-mediated hydrogen bonds. This gives rise to ambidextrous helices as major conformers in P1 and P2. The absence of the observation of ambidexterity in P3 might be due to the inability of γ4,4 in the recruitment of a water molecule. Experiments (NMR, X-ray, and CD) and density functional theory (DFT) calculations suggest that the position of geminal disubstitution is crucial for determining the population of the amenable helical conformations (ambidextrous, left and right-handed) in these chiral peptides.
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Affiliation(s)
- Swapna Debnath
- Department
of Chemistry, Indian Institute of Technology,
Guwahati, Guwahati, Assam 781039, India
| | | | - Dinesh Kumar
- Plant
Biotechnology Division, CSIR-Central Institute
of Medicinal and Aromatic Plants Lucknow, Uttar Pradesh 226015, India
| | - Babulal Das
- Department
of Chemistry, Indian Institute of Technology,
Guwahati, Guwahati, Assam 781039, India
| | - Prema G. Vasudev
- Plant
Biotechnology Division, CSIR-Central Institute
of Medicinal and Aromatic Plants Lucknow, Uttar Pradesh 226015, India
| | - Priyadarshi Satpati
- Biosciences
and Bioengineering, Indian Institute of
Technology, Guwahati, Guwahati, Assam 781039, India
| | - Sunanda Chatterjee
- Department
of Chemistry, Indian Institute of Technology,
Guwahati, Guwahati, Assam 781039, India
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Devi M, Moral R, Thakuria S, Mitra A, Paul S. Hydrophobic Deep Eutectic Solvents as Greener Substitutes for Conventional Extraction Media: Examples and Techniques. ACS Omega 2023; 8:9702-9728. [PMID: 36969397 PMCID: PMC10034849 DOI: 10.1021/acsomega.2c07684] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Accepted: 02/24/2023] [Indexed: 06/18/2023]
Abstract
Deep eutectic solvents (DESs) are multicomponent designer solvents that exist as stable liquids over a wide range of temperatures. Over the last two decades, research has been dedicated to developing noncytotoxic, biodegradable, and biocompatible DESs to replace commercially available toxic organic solvents. However, most of the DESs formulated until now are hydrophilic and disintegrate via dissolution on coming in contact with the aqueous phase. To expand the repertoire of DESs as green solvents, hydrophobic DESs (HDESs) were prepared as an alternative. The hydrophobicity is a consequence of the constituents and can be modified according to the nature of the application. Due to their immiscibility, HDESs induce phase segregation in an aqueous solution and thus can be utilized as an extracting medium for a multitude of compounds. Here, we review literature reporting the usage of HDESs for the extraction of various organic compounds and metal ions from aqueous solutions and absorption of gases like CO2. We also discuss the techniques currently employed in the extraction processes. We have delineated the limitations that might reduce the applicability of these solvents and also discussed examples of how DESs behave as reaction media. Our review presents the possibility of HDESs being used as substitutes for conventional organic solvents.
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Affiliation(s)
| | | | | | | | - Sandip Paul
- . Phone: +91-361-2582321. Fax: +91-361-2582349
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4
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Prakash V, Kumari K, Ramakrishnan V. Efficient Biosorption of Hexavalent Chromium from Water with Human Hair. ACS Omega 2023; 8:915-924. [PMID: 36643437 PMCID: PMC9835515 DOI: 10.1021/acsomega.2c06268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 11/30/2022] [Indexed: 06/17/2023]
Abstract
The triphenyl group (trityl radical) possessing three-phenyl rings, self-assembled through aromatic π-π stacking interactions, can form interesting crystalline organic nano-flowers. In this work, we have synthesized a hybrid material of 1,2-bis(tritylthio)ethane and magnetite, which reduces toxic Cr(VI) to non-toxic Cr(III). We validated the efficacy of the hybrid in reducing toxic Cr(VI) along with three other adsorbent systems. Among the five adsorbent systems tested, we observed that human hair has higher Cr removal efficiency, which prompted us to explore further using different mechanical forms of human hair. Pulverized hair (PH), hair powder (HP), and raw hair (RH) were evaluated by employing different reaction factors such as the adsorbent dose, pH, initial Cr(VI) concentration, and contact time. The comparative evaluation showed that PH has greater adsorption capacity (15.14 mg/g), followed by RH (13.27 mg/g) and HP (10.5 mg/g). While investigating the adsorption mechanism, we observed that it follows pseudo-second-order kinetics suggesting chemisorption. The Freundlich isotherm model fitted well for Cr(VI) adsorption by human hair, suggesting a multi-layered adsorption process. Overall, this study promises a cost-effective and eco-friendly bio-adsorbent for Cr(VI), which may be scaled up to design automated industrial waste disposal systems.
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Mondal S, Dolai G, Mandal B. Unprecedented C-C Bond Formation via Ipso Nucleophilic Substitution of 2,4-Dinitrobenzene Sulfonic Acid with Active Methylene Compounds. ACS Omega 2023; 8:1401-1409. [PMID: 36643446 PMCID: PMC9835781 DOI: 10.1021/acsomega.2c06865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 12/09/2022] [Indexed: 06/17/2023]
Abstract
The sulfonic acid functionalization of sufficiently electron-deficient benzene sulfonic acids undergoes ipso nucleophilic substitution with various active methylene compounds, leading to new C-C bond formation. Good to excellent yields are obtained under mild conditions without transition-metal (Pd or Cu) catalyst, PTC, and ligand. No solid waste is generated. It is a highly effective strategy for incorporating various active methylene compounds into the o-nitro-substituted benzene ring. This method has been applied not only for synthesizing APIs but also in materials chemistry. It shows a novel route for creating heavily crowded all-carbon quaternary centers. Carbon-carbon bond formation by substituting a sulfonic acid group was unknown.
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Pandit G, Sarkar T, S. R. V, Debnath S, Satpati P, Chatterjee S. Delineating the Mechanism of Action of a Protease Resistant and Salt Tolerant Synthetic Antimicrobial Peptide against Pseudomonas aeruginosa. ACS Omega 2022; 7:15951-15968. [PMID: 35571791 PMCID: PMC9097201 DOI: 10.1021/acsomega.2c01089] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 04/08/2022] [Indexed: 06/15/2023]
Abstract
Rapidly growing antimicrobial resistance (AMR) against antibiotics has propelled the development of synthetic antimicrobial peptides (AMPs) as potential antimicrobial agents. An antimicrobial peptide Nle-Dab-Trp-Nle-Dab-Dab-Nle-CONH2 (P36; Nle = norleucine, Dab = diaminobutyric acid, Trp = tryptophan) potent against Pseudomonas aeruginosa (P. aeruginosa) has been developed in the present study. Rational design strategy adopted in this study led to the improvisation of the therapeutic qualities such as activity, salt tolerance, cytotoxicity, and protease resistance of the template peptide P4, which was earlier reported from our group. P36 exhibited salt tolerant antimicrobial potency against P. aeruginosa, along with very low cytotoxicity against mammalian cell lines. P36 was found to be nonhemolytic and resistant toward protease degradation which qualified it as a potent antimicrobial agent. We have investigated the mechanism of action of this molecule in detail using several experimental techniques (spectroscopic, biophysical, and microscopic) and molecular dynamics simulations. P36 was a membrane active AMP with membrane destabilization and deformation abilities, leading to leakage of the intracellular materials and causing eventual cell death. The interaction between P36 and the microbial membrane/membrane mimics was primarily driven by electrostatics. P36 was unstructured in water and upon binding to the microbial membrane mimic SDS, suggesting no influence of secondary structure on its antimicrobial potency. Positive charge, optimum hydrophobic-hydrophilic balance, and chain length remained the most important concerns to be addressed while designing small cationic antimicrobial peptides.
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Affiliation(s)
- Gopal Pandit
- Department
of Chemistry, Indian Institute of Technology.
Guwahati (IITG), Guwahati, Assam 781039, India
| | - Tanumoy Sarkar
- Department
of Chemistry, Indian Institute of Technology.
Guwahati (IITG), Guwahati, Assam 781039, India
| | - Vignesh S. R.
- Department
of Biosciences and Bioengineering, Indian
Institute of Technology. Guwahati (IITG), Guwahati, Assam 781039, India
| | - Swapna Debnath
- Department
of Chemistry, Indian Institute of Technology.
Guwahati (IITG), Guwahati, Assam 781039, India
| | - Priyadarshi Satpati
- Department
of Biosciences and Bioengineering, Indian
Institute of Technology. Guwahati (IITG), Guwahati, Assam 781039, India
| | - Sunanda Chatterjee
- Department
of Chemistry, Indian Institute of Technology.
Guwahati (IITG), Guwahati, Assam 781039, India
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7
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Hazarika D, Kalita NK, Kumar A, Katiyar V. Functionalized poly(lactic acid) based nano-fabric for anti-viral applications. RSC Adv 2021; 11:32884-32897. [PMID: 35493591 PMCID: PMC9042262 DOI: 10.1039/d1ra05352c] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 08/23/2021] [Indexed: 12/11/2022] Open
Abstract
This study endeavoured to explore and fabricate antiviral and antibacterial facemasks using zinc (oligo-lactate) (ZL), developed through a microwave synthesis technique. The prepared nano-fabric layer has excellent antiviral and antibacterial properties against Newcastle Disease Virus (NDV) and E. coli and S. aureus, respectively. Thermogravimetric analysis (TGA) of ZL shows a two-step thermal degradation, which confirms the formation of low molecular weight end group lactyl units with zinc ions. Another investigation using varying ZL concentration and silk nanocrystal (SNC) with poly(lactic acid) (PLA) and electrospinning them into nanofibres led to the fabrication of a facile and sustainable nanofabric that can be utilized as a protective layer for facemasks. Morphological analysis revealed the successful preparation of the nanofabric with proper distribution and uniformity in fibre diameter. Hydrophobicity of the prepared nanofabric confirmed excellent protection from water droplets that may transpire during coughing or sneezing by an infected individual. Breathability and reusability tests confirmed that the prepared facemask could be reused by ethanol washing without compromising its surface properties till 4 cycles. The PLA/ZL nanofabric layer demonstrated 97% antiviral efficacy against NDV in 10 minutes. In conclusion, the electrospun nanofabric layer can be used as a facemask having high hydrophobicity, good breathability, antibacterial, and antiviral properties to control the spread of contagious diseases.
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Affiliation(s)
- Doli Hazarika
- Chemical Engineering Department, Indian Institute of Technology Guwahati Assam-781039 India
| | - Naba Kumar Kalita
- Chemical Engineering Department, Indian Institute of Technology Guwahati Assam-781039 India
| | - Amit Kumar
- Chemical Engineering Department, Indian Institute of Technology Guwahati Assam-781039 India
| | - Vimal Katiyar
- Chemical Engineering Department, Indian Institute of Technology Guwahati Assam-781039 India
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8
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Konch T, Dutta T, Buragohain M, Raidongia K. Remarkable Rate of Water Evaporation through Naked Veins of Natural Tree Leaves. ACS Omega 2021; 6:20379-20387. [PMID: 34395986 PMCID: PMC8359162 DOI: 10.1021/acsomega.1c02398] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 07/12/2021] [Indexed: 06/13/2023]
Abstract
In the form of leaves, nature designs the finest photothermal evaporators, and the tremendous evaporation efficiency of leaves is supported by a precisely designed network of veins. Here, we have demonstrated that the vein network of a natural leaf can be extracted through a simple water-assisted digestion process and exploited for low-energy steam generation. The naked leaf veins exhibit a remarkable flux (evaporation rate, 1.5 kg·m-2·h-1) of capillary evaporation under ambient conditions (25 °C and 30% RH), close to the photothermal material-based evaporators reported in the recent literature. Even inside a dark box, naked veins exhibit an evaporation rate up to 4.5 kg·m-2·h-1 (at 30% relative humidity (RH) and a wind speed of 22 km·h-1). The mechanistic studies performed with variable atmospheric conditions (temperature, humidity, and wind speed) suggest the evaporation process through the naked veins to be a kinetic-limited process. Naked veins with remarkable evaporation efficiency are found to be suitable for applications like water desalination and streaming potential harvesting. Experiments with the naked veins also unveiled that the biofluidic channels in leaves not only exhibit the characteristics of surface charge-governed ionic transport but also support an exceptional water transport velocity of 1444 μm·s-1.
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Affiliation(s)
- Tukhar
Jyoti Konch
- Department
of Chemistry, Indian Institute of Technology
Guwahati, Guwahati 781039, Assam, India
| | - Trisha Dutta
- Department
of Chemistry, Indian Institute of Technology
Guwahati, Guwahati 781039, Assam, India
| | - Madhurjya Buragohain
- Department
of Chemistry, Indian Institute of Technology
Guwahati, Guwahati 781039, Assam, India
| | - Kalyan Raidongia
- Department
of Chemistry, Indian Institute of Technology
Guwahati, Guwahati 781039, Assam, India
- Centre
for Nanotechnology, Indian Institute of
Technology Guwahati, Guwahati 781039, Assam, India
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Mathew A, Nandy MK. Existence of Chandrasekhar's limit in generalized uncertainty white dwarfs. R Soc Open Sci 2021; 8:210301. [PMID: 34113456 PMCID: PMC8187993 DOI: 10.1098/rsos.210301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Accepted: 04/28/2021] [Indexed: 06/12/2023]
Abstract
The existence of Chandrasekhar's limit has played various decisive roles in astronomical observations for many decades. However, various recent theoretical investigations suggest that gravitational collapse of white dwarfs is withheld for arbitrarily high masses beyond Chandrasekhar's limit if the equation of state incorporates the effect of quantum gravity via the generalized uncertainty principle. There have been a few attempts to restore the Chandrasekhar limit but they are found to be inadequate. In this paper, we rigorously resolve this problem by analysing the dynamical instability in general relativity. We confirm the existence of Chandrasekhar's limit as well as stable mass-radius curves that behave consistently with astronomical observations. Moreover, this stability analysis suggests gravitational collapse beyond the Chandrasekhar limit signifying the possibility of compact objects denser than white dwarfs.
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Affiliation(s)
- Arun Mathew
- Department of Physics, Indian Institute of Technology Guwahati, Guwahati 781039, India
| | - Malay K. Nandy
- Department of Physics, Indian Institute of Technology Guwahati, Guwahati 781039, India
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Das A, Maji K, Naskar S, Manna U. Facile optimization of hierarchical topography and chemistry on magnetically active graphene oxide nanosheets. Chem Sci 2020; 11:6556-6566. [PMID: 34094121 PMCID: PMC8152583 DOI: 10.1039/d0sc00517g] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Accepted: 03/20/2020] [Indexed: 12/02/2022] Open
Abstract
Highly flexible and two-dimensional (2D) graphene oxide (GO) nanosheets have remained instrumental for developing different functional materials for practically relevant applications. In general, 2D GO is routinely assembled into different structures (i.e. layered, porous, etc.) for achieving desired properties. However, a facile approach for modifying GO nanosheets with (1) hierarchical topography and (2) desired chemistry is rare in the literature. In this report, adequate optimization of both hierarchical topography and low surface energy chemistry in a confined space (in the order of μm dimensions) of GO nanosheets is unprecedentedly carried out for achieving magnetically active and 2D 'confined-super-water-repellence'. A chemically reactive polymeric complex was covalently deposited on the GO-nanosheets through a facile 1,4-conjugate addition reaction for adopting a chemically reactive and hierarchically featured polymeric interface. Simultaneously, the deposition of iron oxide nanoparticles on the 2D-nanosheets rendered the entire material magnetically active. The post-covalent modification of these chemically/magnetically active and hierarchically featured GO-nanosheets with octadecylamine (ODA) yielded magnetically active and 2D 'confined-superhydrophobicity'. Further, this synthesized material was extended for addressing highly relevant and severe global challenges of 'oil-in-water' and 'water-in-oil' emulsion separation by either selective collection (with an efficiency of above 1000 wt%) of tiny oil-droplets from bulk water or forming magnetically active 'Pickering-type' aqueous droplets, respectively, under various practically relevant harsh conditions, including extremes of pH, salinity, surfactant contamination, etc. Further, appropriate functionalization of this chemically/magnetically active 2D nano-interface could be useful in developing functional interfaces for various applications related to energy, catalysis and healthcare.
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Affiliation(s)
- Avijit Das
- Bio-Inspired Polymeric Materials Lab, Department of Chemistry, Indian Institute of Technology-Guwahati Kamrup Assam 781039 India
| | - Kousik Maji
- Bio-Inspired Polymeric Materials Lab, Department of Chemistry, Indian Institute of Technology-Guwahati Kamrup Assam 781039 India
| | - Sarajit Naskar
- Bio-Inspired Polymeric Materials Lab, Department of Chemistry, Indian Institute of Technology-Guwahati Kamrup Assam 781039 India
| | - Uttam Manna
- Bio-Inspired Polymeric Materials Lab, Department of Chemistry, Indian Institute of Technology-Guwahati Kamrup Assam 781039 India
- Centre for Nanotechnology, Indian Institute of Technology-Guwahati Kamrup Assam 781039 India
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