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Barnett M, Wang D, Beadnall H, Bischof A, Brunacci D, Butzkueven H, Brown JWL, Cabezas M, Das T, Dugal T, Guilfoyle D, Klistorner A, Krieger S, Kyle K, Ly L, Masters L, Shieh A, Tang Z, van der Walt A, Ward K, Wiendl H, Zhan G, Zivadinov R, Barnett Y, Wang C. A real-world clinical validation for AI-based MRI monitoring in multiple sclerosis. NPJ Digit Med 2023; 6:196. [PMID: 37857813 PMCID: PMC10587188 DOI: 10.1038/s41746-023-00940-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Accepted: 09/29/2023] [Indexed: 10/21/2023] Open
Abstract
Modern management of MS targets No Evidence of Disease Activity (NEDA): no clinical relapses, no magnetic resonance imaging (MRI) disease activity and no disability worsening. While MRI is the principal tool available to neurologists for monitoring clinically silent MS disease activity and, where appropriate, escalating treatment, standard radiology reports are qualitative and may be insensitive to the development of new or enlarging lesions. Existing quantitative neuroimaging tools lack adequate clinical validation. In 397 multi-center MRI scan pairs acquired in routine practice, we demonstrate superior case-level sensitivity of a clinically integrated AI-based tool over standard radiology reports (93.3% vs 58.3%), relative to a consensus ground truth, with minimal loss of specificity. We also demonstrate equivalence of the AI-tool with a core clinical trial imaging lab for lesion activity and quantitative brain volumetric measures, including percentage brain volume loss (PBVC), an accepted biomarker of neurodegeneration in MS (mean PBVC -0.32% vs -0.36%, respectively), whereas even severe atrophy (>0.8% loss) was not appreciated in radiology reports. Finally, the AI-tool additionally embeds a clinically meaningful, experiential comparator that returns a relevant MS patient centile for lesion burden, revealing, in our cohort, inconsistencies in qualitative descriptors used in radiology reports. AI-based image quantitation enhances the accuracy of, and value-adds to, qualitative radiology reporting. Scaled deployment of these tools will open a path to precision management for patients with MS.
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Affiliation(s)
- Michael Barnett
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia
- Department of Neurology, Royal Prince Alfred Hospital, Camperdown, NSW, Australia
| | - Dongang Wang
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia
| | - Heidi Beadnall
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia
- Department of Neurology, Royal Prince Alfred Hospital, Camperdown, NSW, Australia
| | - Antje Bischof
- Department of Neurology, University Hospital of Muenster, Muenster, Germany
| | - David Brunacci
- Department of Radiology, Royal Prince Alfred Hospital, Camperdown, NSW, Australia
| | - Helmut Butzkueven
- Department of Neurology, The Alfred Hospital, Melbourne, VIC, Australia
- Department of Neuroscience, Central Clinical School, Monash University, Melbourne, VIC, Australia
| | - J William L Brown
- Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK
| | - Mariano Cabezas
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia
| | - Tilak Das
- Department of Radiology, University of Cambridge, Cambridge, UK
| | - Tej Dugal
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
- Synergy Radiology, Sydney, NSW, Australia
| | - Daniel Guilfoyle
- Department of Neurology, Royal Prince Alfred Hospital, Camperdown, NSW, Australia
| | - Alexander Klistorner
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia
- Save Sight Institute, University of Sydney, Sydney, NSW, Australia
| | - Stephen Krieger
- Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - Kain Kyle
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia
| | - Linda Ly
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
| | | | - Andy Shieh
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
| | - Zihao Tang
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia
| | - Anneke van der Walt
- Department of Radiology, Royal Prince Alfred Hospital, Camperdown, NSW, Australia
- Department of Neurology, The Alfred Hospital, Melbourne, VIC, Australia
| | - Kayla Ward
- Department of Neurology, Royal Prince Alfred Hospital, Camperdown, NSW, Australia
| | - Heinz Wiendl
- Department of Neurology, University Hospital of Muenster, Muenster, Germany
| | - Geng Zhan
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia
| | | | - Yael Barnett
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia
- Department of Radiology, St Vincent's Hospital, Sydney, NSW, Australia
| | - Chenyu Wang
- Sydney Neuroimaging Analysis Centre, Sydney, NSW, Australia.
- Brain and Mind Centre, University of Sydney, Sydney, NSW, Australia.
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Zou A, Ramanathan S, Dale RC, Brilot F. Single-cell approaches to investigate B cells and antibodies in autoimmune neurological disorders. Cell Mol Immunol 2021; 18:294-306. [PMID: 32728203 PMCID: PMC8027387 DOI: 10.1038/s41423-020-0510-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Accepted: 07/07/2020] [Indexed: 12/18/2022] Open
Abstract
Autoimmune neurological disorders, including neuromyelitis optica spectrum disorder, anti-N-methyl-D-aspartate receptor encephalitis, anti-MOG antibody-associated disorders, and myasthenia gravis, are clearly defined by the presence of autoantibodies against neurological antigens. Although these autoantibodies have been heavily studied for their biological activities, given the heterogeneity of polyclonal patient samples, the characteristics of a single antibody cannot be definitively assigned. This review details the findings of polyclonal serum and CSF studies and then explores the advances made by single-cell technologies to the field of antibody-mediated neurological disorders. High-resolution single-cell methods have revealed abnormalities in the tolerance mechanisms of several disorders and provided further insight into the B cells responsible for autoantibody production. Ultimately, several factors, including epitope specificity and binding affinity, finely regulate the pathogenic potential of an autoantibody, and a deeper appreciation of these factors may progress the development of targeted immunotherapies for patients.
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Affiliation(s)
- Alicia Zou
- Brain Autoimmunity Group, Kids Neuroscience Centre, Kids Research at the Children's Hospital at Westmead, Sydney, NSW, Australia
- Discipline of Child and Adolescent Health, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia
| | - Sudarshini Ramanathan
- Brain Autoimmunity Group, Kids Neuroscience Centre, Kids Research at the Children's Hospital at Westmead, Sydney, NSW, Australia
- Discipline of Child and Adolescent Health, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia
| | - Russell C Dale
- Brain Autoimmunity Group, Kids Neuroscience Centre, Kids Research at the Children's Hospital at Westmead, Sydney, NSW, Australia
- Discipline of Child and Adolescent Health, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia
- Brain and Mind Centre, The University of Sydney, Sydney, NSW, Australia
| | - Fabienne Brilot
- Brain Autoimmunity Group, Kids Neuroscience Centre, Kids Research at the Children's Hospital at Westmead, Sydney, NSW, Australia.
- Discipline of Child and Adolescent Health, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia.
- Brain and Mind Centre, The University of Sydney, Sydney, NSW, Australia.
- School of Medical Sciences, Discipline of Applied Medical Science, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW, Australia.
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Maltby VE, Lea RA, Graves MC, Sanders KA, Benton MC, Tajouri L, Scott RJ, Lechner-Scott J. Genome-wide DNA methylation changes in CD19 + B cells from relapsing-remitting multiple sclerosis patients. Sci Rep 2018; 8:17418. [PMID: 30479356 PMCID: PMC6258668 DOI: 10.1038/s41598-018-35603-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Accepted: 10/17/2018] [Indexed: 01/07/2023] Open
Abstract
Multiple Sclerosis (MS) is an inflammatory and neurodegenerative disease of the central nervous system. The inflammatory process in MS is driven by both T and B cells and current therapies are targeted to each of these cell types. Epigenetic mechanisms may provide a valuable link between genes and environment. DNA methylation is the best studied epigenetic mechanism and is recognized as a potential contributor to MS risk. The objective of this study was to identify DNA methylation changes associated with MS in CD19+ B-cells. We performed an epigenome-wide association analysis of DNA methylation in the CD19+ B-cells from 24 patients with relapsing-remitting MS on various treatments and 24 healthy controls using Illumina 450 K arrays. A large differentially methylated region (DMR) was observed at the lymphotoxin alpha (LTA) locus. This region was hypermethylated and contains 19 differentially methylated positions (DMPs) spanning 860 bp, all of which are located within the transcriptional start site. We also observed smaller DMRs at 4 MS-associated genes: SLC44A2, LTBR, CARD11 and CXCR5. These preliminary findings suggest that B-cell specific DNA-methylation may be associated with MS risk or response to therapy, specifically at the LTA locus. Development of B-cell specific epigenetic therapies is an attractive new avenue of research in MS treatment. Further studies are now required to validate these findings and understand their functional significance.
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Affiliation(s)
- Vicki E Maltby
- School of Medicine and Public Health, University of Newcastle, Newcastle, Australia
- Centre for Information Based Medicine, Hunter Medical Research Institute, Newcastle, Australia
| | - Rodney A Lea
- School of Medicine and Public Health, University of Newcastle, Newcastle, Australia
- Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
| | - Moira C Graves
- School of Medicine and Public Health, University of Newcastle, Newcastle, Australia
- Centre for Information Based Medicine, Hunter Medical Research Institute, Newcastle, Australia
| | - Katherine A Sanders
- Centre for Information Based Medicine, Hunter Medical Research Institute, Newcastle, Australia
- Faculty of Health Sciences and Medicine, Bond University, Gold Coast, Australia
| | - Miles C Benton
- School of Medicine and Public Health, University of Newcastle, Newcastle, Australia
- Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
| | - Lotti Tajouri
- Faculty of Health Sciences and Medicine, Bond University, Gold Coast, Australia
| | - Rodney J Scott
- Centre for Information Based Medicine, Hunter Medical Research Institute, Newcastle, Australia
- School of Biomedical Sciences and Pharmacy, University of Newcastle, Newcastle, Australia
- Medical Genetics, Pathology North, John Hunter Hospital, Newcastle, Australia
| | - Jeannette Lechner-Scott
- School of Medicine and Public Health, University of Newcastle, Newcastle, Australia.
- Centre for Information Based Medicine, Hunter Medical Research Institute, Newcastle, Australia.
- Department of Neurology, John Hunter Hospital, Newcastle, Australia.
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