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Zhang Z, Ma J, Yang X, Liu Z, Liu Y, Liu X, Liang S, Duan Z, Wang Z, Yang X, Yan L, Zhang M, Liu S, Tian Z. Natural allelic diversities of GmPrx16 confer drought tolerance in soybean. Plant Biotechnol J 2024; 22:535-537. [PMID: 37991796 PMCID: PMC10893949 DOI: 10.1111/pbi.14249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 10/12/2023] [Accepted: 11/13/2023] [Indexed: 11/23/2023]
Affiliation(s)
- Zhifang Zhang
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijingChina
| | - Junkui Ma
- The Industrial Crop InstituteShanxi Agriculture University/Shanxi Academy of Agricultural SciencesTaiyuanChina
| | - Xia Yang
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijingChina
| | - Zhi Liu
- The Key Laboratory of Crop Genetics and Breeding, Institute of Cereal and Oil CropsHebei Academy of Agricultural and Forestry SciencesShi‐jiazhuangChina
| | - Yucheng Liu
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijingChina
| | - Xueyi Liu
- The Industrial Crop InstituteShanxi Agriculture University/Shanxi Academy of Agricultural SciencesTaiyuanChina
| | - Shan Liang
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijingChina
- University of Chinese Academy of SciencesBeijingChina
| | | | - Zheng Wang
- State Key Laboratory of Vegetable Biobreeding, Beijing Vegetable Research CenterBeijing Academy of Agriculture and Forestry ScienceBeijingChina
| | - Xiaoyue Yang
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijingChina
- University of Chinese Academy of SciencesBeijingChina
| | - Long Yan
- The Key Laboratory of Crop Genetics and Breeding, Institute of Cereal and Oil CropsHebei Academy of Agricultural and Forestry SciencesShi‐jiazhuangChina
| | - Min Zhang
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijingChina
| | - Shulin Liu
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijingChina
| | - Zhixi Tian
- Key Laboratory of Seed Innovation, Institute of Genetics and Developmental BiologyChinese Academy of SciencesBeijingChina
- University of Chinese Academy of SciencesBeijingChina
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Chu J, Li W, Yang Z, Shao Z, Zhang H, Rong S, Kong Y, Du H, Li X, Zhang C. Genome resequencing reveals genetic loci and genes conferring resistance to SMV-SC8 in soybean. Theor Appl Genet 2023; 136:129. [PMID: 37193909 DOI: 10.1007/s00122-023-04373-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 04/28/2023] [Indexed: 05/18/2023]
Abstract
KEY MESSAGE A soybean natural population genotyped by resequencing and another RIL population genotyped by SoySNP6K were used to explore consistent genetic loci and genes under greenhouse- and field-conditions for SMV-SC8 resistance. Soybean mosaic virus (SMV) is a member of the genus Potyvirus that occurs in all soybean-growing areas of the world and causes serious losses of yield and seed quality. In this study, a natural population composed of 209 accessions resequenced at an average depth of 18.44 × and another RIL population containing 193 lines were used to explore genetic loci and genes conferring resistance to SMV-SC8. There were 3030 SNPs significantly associated with resistance to SC8 on chromosome 13 in the natural population, among which 327 SNPs were located within an ~ 0.14 Mb region (from 28.46 to 28.60 Mb) of the major QTL qRsc8F in the RIL population. Two genes among 21 candidate genes, GmMACPF1 and GmRad60, were identified in the region of consistent linkage and association. Compared to the mock control, the changes in the expression of these two genes after inoculation with SC8 differed between resistant and susceptible accessions. More importantly, GmMACPF1 was shown to confer resistance to SC8 by significantly decreasing virus content in soybean hairy roots overexpressing this gene. A functional marker, FMSC8, was developed based on the allelic variation of GmMACPF1, and a high coincidence rate of 80.19% between the disease index and marker genotype was identified in the 419 soybean accessions. The results provide valuable resources for studies on the molecular mechanism of SMV resistance and genetic improvement in soybean.
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Affiliation(s)
- Jiahao Chu
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China
| | - Wenlong Li
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China
| | - Zhanwu Yang
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China
| | - Zhenqi Shao
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China
| | - Hua Zhang
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China
| | - Shaoda Rong
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China
| | - Youbin Kong
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China
| | - Hui Du
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China
| | - Xihuan Li
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China.
| | - Caiying Zhang
- State Key Laboratory of North China Crop Improvement and Regulation, North China Key Laboratory for Crop Germplasm Resources of Education Ministry, Key Laboratory for Crop Germplasm Resources of Hebei, Hebei Agricultural University, Baoding, China.
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