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Buceta D, Dominguez B, Vieitez S, Arias IR, Ageitos JM, Blanco MC, Barone G, Domínguez F, López‐Quintela MA. A Simple Entropic-Driving Separation Procedure of Low-Size Silver Clusters, Through Interaction with DNA. ChemistryOpen 2021; 10:760-763. [PMID: 34351086 PMCID: PMC8340070 DOI: 10.1002/open.202100028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Revised: 07/01/2021] [Indexed: 11/07/2022] Open
Abstract
Synthesis and purification of metal clusters without strong binding agents by wet chemical methods are very attractive for their potential applications in many research areas. However, especially challenging is the separation of uncharged clusters with only a few number of atoms, which renders the usual techniques very difficult to apply. Herein, we report the first efficient separation of Ag2 and Ag3 clusters using the different entropic driving forces when such clusters interact with DNA, into which Ag3 selectively intercalates. After sequential dialysis of the samples and denaturalizing the DNA-Ag3 complex, pure Ag2 can be found in the dialysate after extensive dialysis. Free Ag3 is recovered after DNA denaturation.
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Affiliation(s)
- David Buceta
- Department of Physical ChemistryLab. Nanomag University of Santiago de Compostela15782Santiago de CompostelaSpain
| | - Blanca Dominguez
- Department of Physical ChemistryLab. Nanomag University of Santiago de Compostela15782Santiago de CompostelaSpain
| | - Sara Vieitez
- Department of Physical ChemistryLab. Nanomag University of Santiago de Compostela15782Santiago de CompostelaSpain
| | - Iria R. Arias
- Department of Physical ChemistryLab. Nanomag University of Santiago de Compostela15782Santiago de CompostelaSpain
| | - J. Manuel Ageitos
- Department of PharmacologyPharmacy and Pharmaceutical Technologyand Centro de Investigaciones en Medicina Molecular y Enfermedades Crónicas (CIMUS)University of Santiago de Compostela15782Santiago de CompostelaSpain
| | - M. Carmen Blanco
- Department of Physical ChemistryLab. Nanomag University of Santiago de Compostela15782Santiago de CompostelaSpain
| | - Giampaolo Barone
- Department of Biological, Chemical and Pharmaceutical Sciences and TechnologiesUniversity of Palermo90128PalermoItaly
| | - Fernando Domínguez
- Department of Physiology and Centro de Investigaciones en Medicina Molecular y Enfermedades Crónicas (CIMUS)University of Santiago de CompostelaE-15782Santiago de CompostelaSpain
| | - M. Arturo López‐Quintela
- Department of Physical ChemistryLab. Nanomag University of Santiago de Compostela15782Santiago de CompostelaSpain
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Álvarez-Fraga L, Rumbo-Feal S, Pérez A, Gómez MJ, Gayoso C, Vallejo JA, Ohneck EJ, Valle J, Actis LA, Beceiro A, Bou G, Poza M. Global assessment of small RNAs reveals a non-coding transcript involved in biofilm formation and attachment in Acinetobacter baumannii ATCC 17978. PLoS One 2017; 12:e0182084. [PMID: 28763494 PMCID: PMC5538643 DOI: 10.1371/journal.pone.0182084] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Accepted: 07/12/2017] [Indexed: 12/30/2022] Open
Abstract
Many strains of Acinetobacter baumannii have been described as being able to form biofilm. Small non-coding RNAs (sRNAs) control gene expression in many regulatory circuits in bacteria. The aim of the present work was to provide a global description of the sRNAs produced both by planktonic and biofilm-associated (sessile) cells of A. baumannii ATCC 17978, and to compare the corresponding gene expression profiles to identify sRNAs molecules associated to biofilm formation and virulence. sRNA was extracted from both planktonic and sessile cells and reverse transcribed. cDNA was subjected to 454-pyrosequencing using the GS-FLX Titanium chemistry. The global analysis of the small RNA transcriptome revealed different sRNA expression patterns in planktonic and biofilm associated cells, with some of the transcripts only expressed or repressed in sessile bacteria. A total of 255 sRNAs were detected, with 185 of them differentially expressed in the different types of cells. A total of 9 sRNAs were expressed only in biofilm cells, while the expression of other 21 coding regions were repressed only in biofilm cells. Strikingly, the expression level of the sRNA 13573 was 120 times higher in biofilms than in planktonic cells, an observation that prompted us to further investigate the biological role of this non-coding transcript. Analyses of an isogenic mutant and over-expressing strains revealed that the sRNA 13573 gene is involved in biofilm formation and attachment to A549 human alveolar epithelial cells. The present work serves as a basis for future studies examining the complex regulatory network that regulate biofilm biogenesis and attachment to eukaryotic cells in A. baumannii ATCC 17978.
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Affiliation(s)
- Laura Álvarez-Fraga
- Departamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain
| | - Soraya Rumbo-Feal
- Departamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain
| | - Astrid Pérez
- Departamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain
- Department of Microbiology, Miami University, Oxford, Ohio, United States of America
| | - Manuel J. Gómez
- Department of Molecular Evolution, Center for Astrobiology, INTA-CSIC, Torrejón de Ardoz, Madrid, Spain
- Centro Nacional de Investigaciones Cardiovasculares Carlos III, Madrid, Spain
| | - Carmen Gayoso
- Departamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain
| | - Juan A. Vallejo
- Departamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain
| | - Emily J. Ohneck
- Department of Microbiology, Miami University, Oxford, Ohio, United States of America
| | - Jaione Valle
- Departamento de Biofilms Microbianos, Instituto de Agrobiotecnología, Navarra, Spain
| | - Luis A. Actis
- Department of Microbiology, Miami University, Oxford, Ohio, United States of America
| | - Alejandro Beceiro
- Departamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain
| | - Germán Bou
- Departamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain
- * E-mail: (GB); (MP)
| | - Margarita Poza
- Departamento de Microbiología, Instituto de Investigación Biomédica (INIBIC), Complejo Hospitalario Universitario (CHUAC), A Coruña, Spain
- * E-mail: (GB); (MP)
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