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Appoo J, Bunbury N, Jaquemet S, Graham NA. Seabird nutrient subsidies enrich mangrove ecosystems and are exported to nearby coastal habitats. iScience 2024; 27:109404. [PMID: 38510135 PMCID: PMC10952037 DOI: 10.1016/j.isci.2024.109404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 01/19/2024] [Accepted: 02/29/2024] [Indexed: 03/22/2024] Open
Abstract
Eutrophication by human-derived nutrient enrichment is a major threat to mangroves, impacting productivity, ecological functions, resilience, and ecosystem services. Natural mangrove nutrient enrichment processes, however, remain largely uninvestigated. Mobile consumers such as seabirds are important vectors of cross-ecosystem nutrient subsidies to islands but how they influence mangrove ecosystems is poorly known. We assessed the contribution, uptake, cycling, and transfer of nutrients from seabird colonies in remote mangrove systems free of human stressors. We found that nutrients from seabird guano enrich mangrove plants, reduce nutrient limitations, enhance mangrove invertebrate food webs, and are exported to nearby coastal habitats through tidal flow. We show that seabird nutrient subsidies in mangroves can be substantial, improving the nutrient status and health of mangroves and adjacent coastal habitats. Conserving mobile consumers, such as seabirds, is therefore vital to preserve and enhance their role in mangrove productivity, resilience, and provision of diverse functions and services.
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Affiliation(s)
- Jennifer Appoo
- UMR ENTROPIE, Université de La Réunion, 97744 Saint Denis Cedex 9, La Réunion, France
- Seychelles Islands Foundation, Victoria, Mahé, Seychelles
| | - Nancy Bunbury
- Seychelles Islands Foundation, Victoria, Mahé, Seychelles
- Centre for Ecology and Conservation, University of Exeter, Cornwall TR10 9FE, UK
| | - Sébastien Jaquemet
- UMR ENTROPIE, Université de La Réunion, 97744 Saint Denis Cedex 9, La Réunion, France
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2
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Galligan BP, McClanahan TR. Tropical fishery nutrient production depends on biomass-based management. iScience 2024; 27:109420. [PMID: 38510133 PMCID: PMC10952041 DOI: 10.1016/j.isci.2024.109420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 11/17/2023] [Accepted: 03/01/2024] [Indexed: 03/22/2024] Open
Abstract
The need to enhance nutrient production from tropical ecosystems to feed the poor could potentially create a new framework for fisheries science and management. Early recommendations have included targeting small fishes and increasing the species richness of fish catches, which could represent a departure from more traditional approaches such as biomass-based management. To test these recommendations, we compared the outcomes of biomass-based management with hypothesized factors influencing nutrient density in nearshore artisanal fish catches in the Western Indian Ocean. We found that enhancing nutrient production depends primarily on achieving biomass-based targets. Catches dominated by low- and mid-trophic level species with smaller body sizes and faster turnover were associated with modest increases in nutrient densities, but the variability in nutrient density was small relative to human nutritional requirements. Therefore, tropical fishery management should focus on restoring biomass to achieve maximum yields and sustainability, particularly for herbivorous fishes.
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Affiliation(s)
- Bryan P. Galligan
- Jesuit Justice and Ecology Network Africa, Karen, Nairobi 00502, Kenya
- Loyola University Chicago, Department of Biology, Chicago, IL 60660, USA
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3
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Kang M, Liu L, Grossart HP. Spatio-temporal variations of methane fluxes in sediments of a deep stratified temperate lake. iScience 2024; 27:109520. [PMID: 38591008 PMCID: PMC11000008 DOI: 10.1016/j.isci.2024.109520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 12/09/2023] [Accepted: 03/14/2024] [Indexed: 04/10/2024] Open
Abstract
Spatio-temporal variability of sediment-mediated methane (CH4) production in freshwater lakes causes large uncertainties in predicting global lake CH4 emissions under different climate change and eutrophication scenarios. We conducted extensive sediment incubation experiments to investigate CH4 fluxes in Lake Stechlin, a deep, stratified temperate lake. Our results show contrasting spatial patterns in CH4 fluxes between littoral and profundal sites. The littoral sediments, ∼33% of the total sediment surface area, contributed ∼86.9% of the annual CH4 flux at the sediment-water interface. Together with sediment organic carbon quality, seasonal stratification is responsible for the striking spatial difference in sediment CH4 production between littoral and profundal zones owing to more sensitive CH4 production than oxidation to warming. While profundal sediments produce a relatively small amount of CH4, its production increases markedly as anoxia spreads in late summer. Our measurements indicate that future lake CH4 emissions will increase due to climate warming and concomitant hypoxia/anoxia.
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Affiliation(s)
- Manchun Kang
- Engineering Research Center of Eco-environment in Three Gorges Reservoir Region, Yichang 443002, China
- Hubei Field Observation and Scientific Research Stations for Water Ecosystem in Three Gorges Reservoir, Yichang 443002, China
| | - Liu Liu
- Yunnan Key Laboratory of Plateau Geographical Processes and Environmental Changes, Faculty of Geography, Yunnan Normal University, Kunming 650500, China
- Department of Plankton and Microbial Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, 16775 Stechlin, Germany
| | - Hans-Peter Grossart
- Department of Plankton and Microbial Ecology, Leibniz Institute of Freshwater Ecology and Inland Fisheries, 16775 Stechlin, Germany
- Institute of Biochemistry and Biology, Potsdam University, 14476 Potsdam, Germany
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4
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Spade DA, Aliyu I, van Horen J, Strickler JR. A class of statistical models for the motion of Daphnia over small time scales. Math Biosci 2024; 367:109114. [PMID: 38081575 DOI: 10.1016/j.mbs.2023.109114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 11/27/2023] [Accepted: 12/01/2023] [Indexed: 01/09/2024]
Abstract
A common question in the aquatic sciences is that of how zooplankter movement can be modeled. It is well-established in the literature that there exists a randomness to this movement, but the question is how to characterize this randomness. The most common methods for doing this involve the random walk and correlated random walk (CRW) models. Here, we present a time series model that allows a better description the randomness in Daphnia motion when the amount of time that elapses between observations of their position is small. Our approach is adaptable to description of tracks of a multitude of animal species through re-estimation of model parameters. The model we propose uses information about how the animal moved during the previous two time intervals to explain how it moves currently. We demonstrate that the proposed model provides better predictive accuracy and fit than do the CRW and random walk models.
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Affiliation(s)
- David A Spade
- Department of Mathematical Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
| | - Imani Aliyu
- Whitefish Bay High School, Whitefish Bay, WI, USA
| | - Jules van Horen
- University of Texas Marine Science Institute, Port Aransas, TX, USA; Radboud University, Nijmegen, Netherlands
| | - J R Strickler
- Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, USA; University of Texas Marine Science Institute, Port Aransas, TX, USA; Texas A&M University-Corpus Christi, Corpus Christi, USA
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5
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Tan Y, Sun YX, Zhu YJ, Liao ML, Dong YW. The impacts of thermal heterogeneity across microhabitats on post-settlement selection of intertidal mussels. iScience 2023; 26:108376. [PMID: 38034360 PMCID: PMC10682278 DOI: 10.1016/j.isci.2023.108376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 09/08/2023] [Accepted: 10/27/2023] [Indexed: 12/02/2023] Open
Abstract
Rapid genetic selection is critical for allowing natural populations to adapt to different thermal environments such as those that occur across intertidal microhabitats with high degrees of thermal heterogeneity. To address the question of how thermal regimes influence selection and adaptation in the intertidal black mussel Mytilisepta virgata, we continuously recorded environmental temperatures in both tidal pools and emergent rock microhabitats and then assessed genetic differentiation, gene expression patterns, RNA editing level, and cardiac performance. Our results showed that the subpopulations in the tidal pool and on emergent rocks had different genetic structures and exhibited different physiological and molecular responses to high-temperature stress. These results indicate that environmental heterogeneity across microhabitats is important for driving genetic differentiation and shed light on the importance of post-settlement selection for adaptively modifying the genetic composition and thermal responses of these intertidal mussels.
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Affiliation(s)
- Yue Tan
- The Key Laboratory of Mariculture, Ministry of Education, Fisheries College, Ocean University of China, Qingdao 266003, P.R. China
| | - Yong-Xu Sun
- State Key Laboratory of Marine Environmental Science, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, China
| | - Ya-Jie Zhu
- The Key Laboratory of Mariculture, Ministry of Education, Fisheries College, Ocean University of China, Qingdao 266003, P.R. China
| | - Ming-Ling Liao
- The Key Laboratory of Mariculture, Ministry of Education, Fisheries College, Ocean University of China, Qingdao 266003, P.R. China
| | - Yun-Wei Dong
- The Key Laboratory of Mariculture, Ministry of Education, Fisheries College, Ocean University of China, Qingdao 266003, P.R. China
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6
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Hernández-León S. The biological carbon pump, diel vertical migration, and carbon dioxide removal. iScience 2023; 26:107835. [PMID: 38026165 PMCID: PMC10651677 DOI: 10.1016/j.isci.2023.107835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2023] Open
Abstract
Carbon dioxide is increasing in the atmosphere promoting the faster environmental change of the Earth's recent history. Several marine carbon dioxide removal (mCDR) technologies were proposed to slow down CO2 in the atmosphere. Technologies now under experimentation are related to the increase in gravitational flux. Other mechanisms such as active flux, the transport performed by diel vertical migrants (DVMs) were not considered. We review the effect of DVMs in the epipelagic realm and the top-down promoted by these organisms upon zooplankton and microzooplankton, and their variability due to lunar cycles. A night source of weak light will increase epipelagic zooplankton biomass due to DVMs avoidance from the upper layers to escape predation, promoting DVMs to export this biomass by active flux once the illumination ceases. This mCDR method should be tested in the field as it will increase the efficiency of the biological carbon pump in the ocean.
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Affiliation(s)
- Santiago Hernández-León
- Instituto de Oceanografía y Cambio Global, IOCAG, Universidad de Las Palmas de Gran Canaria, Unidad Asociada ULPGC-CSIC, Campus de Taliarte, Telde, 35214 Gran Canaria, Canary Islands, Spain
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7
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Zhao ZS, Yang LY, Li FX, Cun W, Wang XY, Cao CQ, Zhang QL. Gut flora alterations among aquatic firefly Aquatica leii inhabiting various dissolved oxygen in fresh water. iScience 2023; 26:107809. [PMID: 37744031 PMCID: PMC10514463 DOI: 10.1016/j.isci.2023.107809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Revised: 08/01/2023] [Accepted: 08/30/2023] [Indexed: 09/26/2023] Open
Abstract
Knowledge about the impact of different dissolved oxygen (DO) on the composition and function of gut bacteria of aquatic insects is largely unknown. Herein, we constructed freshwater environments with different DOs (hypoxia: 2.50 ± 0.50, normoxia: 7.00 ± 0.50, and hyperoxia: 13.00 ± 0.50 mg/L) where aquatic firefly Aquatica leii larvae lived for three months. Their gut flora was analyzed using the combination of 16S rRNA amplicon sequencing and metagenomics. The results showed no difference in alpha diversity of the gut flora between A. leii inhabiting various DOs. However, the relative abundance of several bacterial lineages presented significant changes, such as Pseudomonas. In addition, bacterial genes with an altered relative abundance in response to various DOs were primarily related to metabolism. The alteration of these functions correlated with the DO change. This is the first to uncover structure of gut flora under various DOs in aquatic insect larvae.
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Affiliation(s)
- Zi-Shun Zhao
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
| | - Lin-Yu Yang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
| | - Fu-Xin Li
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
| | - Wei Cun
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
| | - Xing-Yan Wang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
| | - Cheng-Quan Cao
- College of Life Sciences, Leshan Normal University, Leshan, Sichuan 614004, China
| | - Qi-Lin Zhang
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
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8
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Prasetyo AP, Cusa M, Murray JM, Agung F, Muttaqin E, Mariani S, McDevitt AD. Universal closed-tube barcoding for monitoring the shark and ray trade in megadiverse conservation hotspots. iScience 2023; 26:107065. [PMID: 37389182 PMCID: PMC10300358 DOI: 10.1016/j.isci.2023.107065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 03/02/2023] [Accepted: 06/02/2023] [Indexed: 07/01/2023] Open
Abstract
Trade restrictions for endangered elasmobranch species exist to disincentivise their exploitation and curb their declines. However, trade monitoring is challenging due to product variety and the complexity of import/export routes. We investigate the use of a portable, universal, DNA-based tool which would greatly facilitate in-situ monitoring. We collected shark and ray samples across the Island of Java, Indonesia, and selected 28 commonly encountered species (including 22 CITES-listed species) to test a recently developed real-time PCR single-assay originally developed for screening bony fish. In the absence of a bespoke elasmobranch identification online platform in the original FASTFISH-ID model, we employed a deep learning algorithm to recognize species based on DNA melt-curve signatures. By combining visual and machine-learning assignment methods, we distinguished 25/28 species, 20 of which were CITES-listed. With further refinement, this method can improve monitoring of the elasmobranch trade worldwide, without a lab or species-specific assays.
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Affiliation(s)
- Andhika P. Prasetyo
- School of Science, Engineering and Environment, University of Salford, Salford, UK
- Centre Fisheries Research, Ministry for Marine Affairs and Fisheries, Jakarta, Indonesia
- Research Centre for Conservation of Marine and Inland Water Resources, National Research and Innovation Agency, Bogor, Indonesia
| | - Marine Cusa
- School of Science, Engineering and Environment, University of Salford, Salford, UK
| | - Joanna M. Murray
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Lowestoft, UK
| | - Firdaus Agung
- Directorate for Conservation and Marine Biodiversity, Ministry for Marine Affairs and Fisheries, Jakarta, Indonesia
| | - Efin Muttaqin
- Wildlife Conservation Society Indonesia Program, Bogor, Indonesia
| | - Stefano Mariani
- School of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, UK
| | - Allan D. McDevitt
- School of Science, Engineering and Environment, University of Salford, Salford, UK
- Department of Natural Resources and Environment, School of Science and Computing, Atlantic Technological University, Galway, Ireland
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9
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She W, Wang H, Linardi D, Chik SY, Lan Y, Chen F, Cheng A, Qian PY. Mode of action of antifouling compound albofungin in inhibiting barnacle larval settlement. iScience 2023; 26:106981. [PMID: 37534162 PMCID: PMC10391604 DOI: 10.1016/j.isci.2023.106981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 03/06/2023] [Accepted: 05/24/2023] [Indexed: 08/04/2023] Open
Abstract
Marine biofouling causes huge economic losses to the marine industry every year. Albofungin is a potential antifoulant showing strong anti-macrofouling activities against larval settlement of major fouling organisms. In the present study, directed RNA-seq and proteomic analyses were used to investigate changes in the transcriptome and proteome of a major fouling barnacle Amphibalanus amphitrite cyprids in response to albofungin treatment. Results showed that albofungin treatment remarkably upregulated the metabolism of xenobiotics by the cytochrome P450 pathway to discharge the compound and downregulated energy metabolic processes. Intriguingly, immunostaining and whole-mount in situ hybridization (WISH) revealed the spatial expression patterns of selected differentially expressed genes (glutathione S-transferase [GST], nitric oxide synthase [NOS], and calmodulin [CaM]) distributed in the thorax and antennule of A. amphitrite. Our study provides new insights into the mechanism of albofungin in interrupting the larval settlement of A. amphitrite and suggests its potential application as an antifouling agent in marine environments.
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Affiliation(s)
- Weiyi She
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Nansha, Guangdong, China
- Department of Ocean Science and Hong Kong Brach of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong University of Science and Technology, Hong Kong, China
- SZU-HKUST Joint PhD Program in Marine Environmental Science, Shenzhen University, Shenzhen 518060, China
| | - Hao Wang
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Nansha, Guangdong, China
- Department of Ocean Science and Hong Kong Brach of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong University of Science and Technology, Hong Kong, China
| | - Darwin Linardi
- Chemical and Biological Engineering, Hong Kong University of Science and Technology, Hong Kong, China
| | - Sin Yu Chik
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Nansha, Guangdong, China
- Department of Ocean Science and Hong Kong Brach of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong University of Science and Technology, Hong Kong, China
| | - Yi Lan
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Nansha, Guangdong, China
- Department of Ocean Science and Hong Kong Brach of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong University of Science and Technology, Hong Kong, China
| | - Feng Chen
- Institute for Advanced Study, Shenzhen University, Shenzhen 518060, China
| | - Aifang Cheng
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Nansha, Guangdong, China
- Department of Ocean Science and Hong Kong Brach of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong University of Science and Technology, Hong Kong, China
| | - Pei-Yuan Qian
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Nansha, Guangdong, China
- Department of Ocean Science and Hong Kong Brach of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Hong Kong University of Science and Technology, Hong Kong, China
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Bellworthy J, Pardo R, Scucchia F, Zaslansky P, Goodbody-Gringley G, Mass T. Physiological and morphological plasticity in Stylophora pistillata larvae from Eilat, Israel, to shallow and mesophotic light conditions. iScience 2023; 26:106969. [PMID: 37534177 PMCID: PMC10391605 DOI: 10.1016/j.isci.2023.106969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 03/29/2023] [Accepted: 05/23/2023] [Indexed: 08/04/2023] Open
Abstract
Mesophotic reefs have been proposed as climate change refugia but are not synonymous ecosystems with shallow reefs and remain exposed to anthropogenic impacts. Planulae from the reef-building coral Stylophora pistillata, Gulf of Aqaba, from 5- and 45-m depth were tested ex situ for capacity to settle, grow, and acclimate to reciprocal light conditions. Skeletons were scanned by phase contrast-enhanced micro-CT to study morphology. Deep planulae had reduced volume, smaller diameter on settlement, and greater algal symbiont density. Light conditions did not have significant impact on settlement or mortality rates. Photosynthetic acclimation of algal symbionts was evident within 21-35 days after settlement but growth rate and polyp development were slower for individuals translocated away from their parental origin compared to controls. Though our data reveal rapid symbiont acclimation, reduced growth rates and limited capacity for skeletal modification likely limit the potential for mesophotic larvae to settle on shallow reefs.
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Affiliation(s)
- Jessica Bellworthy
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
- Interuniversity Institute of Marine Sciences, Eilat, Israel
| | - Rachel Pardo
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
| | - Federica Scucchia
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
- Interuniversity Institute of Marine Sciences, Eilat, Israel
| | - Paul Zaslansky
- Department for Operative and Preventive Dentistry, Charité Dental School – Charité – Universitätsmedizin Berlin, Berlin, Germany
| | | | - Tali Mass
- Department of Marine Biology, Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel
- Morris Kahn Marine Research Station, The Leon H. Charney School of Marine Sciences, University of Haifa, Sdot Yam, Israel
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Zhu X, Yang P, Xiong G, Wei H, Zhang L, Wang Z, Ning K. Microbial biogeochemical cycling reveals the sustainability of the rice-crayfish co-culture model. iScience 2023; 26:106769. [PMID: 37234090 PMCID: PMC10206492 DOI: 10.1016/j.isci.2023.106769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 02/08/2023] [Accepted: 04/24/2023] [Indexed: 05/27/2023] Open
Abstract
Aquaculture has great potential in nourishing the global growing population, while such staggering yields are coupled with environmental pollution. Rice-crayfish co-culture models (RCFP) have been widely adopted in China due to their eco-friendliness. However, little is known about RCFP's microbiome pattern, which hinders our understanding of its sustainability. This study has conducted metagenomic analysis across aquaculture models and habitats, which revealed aquaculture model-specific biogeochemical cycling pattern (e.g., nitrogen (N), sulfur (S), and carbon (C)): RCFP is advantageous in N-assimilation, N-contamination, and S-pollutants removal, while non-RCFP features N denitrification process and higher S metabolism ability, producing several hazardous pollutants in non-RCFP (e.g., nitric oxide, nitrogen monoxide, and sulfide). Moreover, RCFP has greater capacity for carbohydrate enzyme metabolism compared with non-RCFP in environmental habitats, but not in crayfish gut. Collectively, RCFP plays an indispensable role in balancing aquaculture productivity and environmental protection, which might be applied to the blue transformation of aquaculture.
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Affiliation(s)
- Xue Zhu
- Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center of AI Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Pengshuo Yang
- Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center of AI Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Guangzhou Xiong
- Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center of AI Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Huimin Wei
- Key Laboratory for Environment and Disaster Monitoring and Evaluation of Hubei, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430077, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lu Zhang
- Key Laboratory for Environment and Disaster Monitoring and Evaluation of Hubei, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430077, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhi Wang
- Key Laboratory for Environment and Disaster Monitoring and Evaluation of Hubei, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430077, China
| | - Kang Ning
- Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center of AI Biology, Department of Bioinformatics and Systems Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
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Popov A, Timofeyev M, Bykov A, Meglinski I. Luminescent upconversion nanoparticles evaluating temperature-induced stress experienced by aquatic organisms owing to environmental variations. iScience 2022; 25:104568. [PMID: 35769879 DOI: 10.1016/j.isci.2022.104568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 04/01/2022] [Accepted: 06/06/2022] [Indexed: 11/21/2022] Open
Abstract
Growing anthropogenic activities are significantly influencing the environment and especially aquatic ecosystems. Therefore, there is an increasing demand to develop techniques for monitoring and assessing freshwater habitat changes so that interventions can prevent irrevocable damage. We explore an approach for screening the temperature-induced stress experienced by aquatic organisms owing to environmental variations. Luminescent spectra of upconversion [Y2O3: Yb, Er] particles embedded within Caridina multidentata shrimps are measured, while ambient temperature gradient is inducing stress conditions. The inverse linear dependence of the logarithmic ratio of the luminescence intensity provides an effective means for temperature evaluation inside aquatic species in vivo. The measured luminescence shows high photostability on the background of the complete absence of biotissues’ autofluorescence, as well as no obscuration of the luminescence signal from upconversion particles. Current approach of hybrid sensing has a great potential for monitoring variations in aquatic ecosystems driven by climate changes and pollution. Luminescence spectra induced by upconversion particles are embedded into aquatic animals Real-time quantitative assessment of temperature inside aquatic species in vivo Evaluation of stress handled by water organisms owing to environmental variations Hybrid sensing approach for monitoring environmental variations driven by climate change
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Abstract
The deep-sea environment creates the largest ecosystem in the world with the largest biological community and extensive undiscovered biodiversity. Nevertheless, these ecosystems are far from well known. Deep-sea equipment is an indispensable approach to research life in extreme environments in the deep-sea environment because of the difficulty in obtaining access to these unique habitats. This work reviewed the historical development and the state-of-the-art of deep-sea equipment suitable for researching extreme ecosystems, to clarify the role of this equipment as a promoter for the progress of life in extreme environmental studies. Linkages of the developed deep-sea equipment and the discovered species are analyzed in this study. In addition, Equipment associated with researching the deep-sea ecosystems of hydrothermal vents, cold seeps, whale falls, seamounts, and oceanic trenches are introduced and analyzed in detail. To clarify the thrust and key points of the future promotion of life in extreme environmental studies, prospects and challenges related to observing equipment, samplers, laboratory simulation systems, and submersibles are proposed. Furthermore, a blueprint for the integration of in situ observations, sampling, controllable culture, manned experiments in underwater environments, and laboratory simulations is depicted for future studies.
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Affiliation(s)
- Jianzhen Liang
- Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, P. R. China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, P. R. China
| | - Jing-Chun Feng
- Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, P. R. China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, P. R. China
| | - Si Zhang
- Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, P. R. China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, P. R. China.,South China Sea Institute of Oceanology, Chinese Academy of Sciences; Guangzhou Higher Education Mega Center, No. 100, Waihuan Xi Road, Panyu District, Guangzhou 510301, P. R. China
| | - Yanpeng Cai
- Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, P. R. China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, P. R. China
| | - Zhifeng Yang
- Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou 510006, P. R. China.,Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, P. R. China
| | - Tian Ni
- China Ship Scientific Research Center, Wuxi 214082, P. R. China
| | - Hua-Yong Yang
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, P. R. China
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