On Mendelian randomization analysis of case-control study

Mendelian randomization (MR) analysis uses genotypes as instruments to estimate the causal effect of an exposure in the presence of unobserved confounders. The existing MR methods focus on the data generated from prospective cohort studies. We develop a procedure for studying binary outcomes under a case-control design. The proposed procedure is built upon two working models commonly used for MR analyses and adopts a quasi-empirical likelihood framework to address the ascertainment bias from case-control sampling. We derive various approaches for estimating the causal effect and hypothesis testing under the empirical likelihood framework. We conduct extensive simulation studies to evaluate the proposed methods. We find that the proposed empirical likelihood estimate is less biased than the existing estimates. Among all the approaches considered, the Lagrange multiplier (LM) test has the highest power, and the confidence intervals derived from the LM test have the most accurate coverage. We illustrate the use of our method in MR analysis of prostate cancer case-control data with vitamin D level as exposure and three single nucleotide polymorphisms as instruments.

On Lagrange Multiplier Tests in Multidimensional Item Response Theory: Information Matrices and Model Misspecification

Lagrange multiplier (LM) or score tests have seen renewed interest for the purpose of diagnosing misspecification in item response theory (IRT) models. LM tests can also be used to test whether parameters differ from a fixed value. We argue that the utility of LM tests depends on both the method used to compute the test and the degree of misspecification in the initially fitted model. We demonstrate both of these points in the context of a multidimensional IRT framework. Through an extensive Monte Carlo simulation study, we examine the performance of LM tests under varying degrees of model misspecification, model size, and different information matrix approximations. A generalized LM test designed specifically for use under misspecification, which has apparently not been previously studied in an IRT framework, performed the best in our simulations. Finally, we reemphasize caution in using LM tests for model specification searches.

Comparing score tests and other local dependence diagnostics for the graded response model

Score tests for identifying locally dependent item pairs have been proposed for binary item response models. In this article, both the bifactor and the threshold shift score tests are generalized to the graded response model. For the bifactor test, the generalization is straightforward; it adds one secondary dimension associated only with one pair of items. For the threshold shift test, however, multiple generalizations are possible: in particular, conditional, uniform, and linear shift tests are discussed in this article. Simulation studies show that all of the score tests have accurate Type I error rates given large enough samples, although their small-sample behaviour is not as good as that of Pearson's Χ2 and M2 as proposed in other studies for the purpose of local dependence (LD) detection. All score tests have the highest power to detect the LD which is consistent with their parametric form, and in this case they are uniformly more powerful than Χ2 and M2 ; even wrongly specified score tests are more powerful than Χ2 and M2 in most conditions. An example using empirical data is provided for illustration.