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Rangadurai AK, Toyama Y, Kay LE. Sometimes pulses just have to be perfect - An example based on the measurement of amide proton transverse relaxation rates in proteins. J Magn Reson 2023; 349:107412. [PMID: 36907132 DOI: 10.1016/j.jmr.2023.107412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 02/17/2023] [Accepted: 02/19/2023] [Indexed: 06/18/2023]
Abstract
The measurement of spin relaxation rates provides a unique avenue for quantifying dynamic processes in biomolecules. In order to simplify analysis of the measurements so that a few key intuitive parameters can be extracted, it is often the case that experiments are designed to eliminate interference effects between different classes of spin relaxation. One example emerges in the measurement of amide proton (1HN) transverse relaxation rates in 15N labeled proteins, where 15N inversion pulses are applied during a relaxation element to eliminate cross-correlated spin relaxation between 1HN-15N dipole-1HN CSA interactions. We show that unless these pulses are essentially perfect, significant oscillations in magnetization decay profiles can be obtained, due to the excitation of multiple-quantum coherences, leading potentially to errors in measured R2 rates. With the recent development of experiments for quantifying electrostatic potentials via amide proton relaxation rates, the need for highly accurate measurement schemes becomes critical. Straightforward modifications to existing pulse sequences are suggested to achieve this goal.
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Affiliation(s)
- Atul Kaushik Rangadurai
- Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada; Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada; Department of Chemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada; Hospital for Sick Children, Program in Molecular Medicine, 555 University Avenue, Toronto, Ontario M5G 1X8, Canada.
| | - Yuki Toyama
- Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada; Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada; Department of Chemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
| | - Lewis E Kay
- Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada; Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada; Department of Chemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada; Hospital for Sick Children, Program in Molecular Medicine, 555 University Avenue, Toronto, Ontario M5G 1X8, Canada.
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Furman GB, Meerovich VM, Sokolovsky VL. Low temperature MQ NMR dynamics in dipolar ordered state. Solid State Nucl Magn Reson 2013; 55-56:73-78. [PMID: 24119731 DOI: 10.1016/j.ssnmr.2013.09.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2013] [Revised: 08/20/2013] [Accepted: 09/18/2013] [Indexed: 06/02/2023]
Abstract
We investigate analytically and numerically the Multiple Quantum (MQ) NMR dynamics in dipolar ordered spin systems of nuclear spins 1/2 at low temperatures. We consider two different methods of MQ NMR. One of them is based on the measurement of the dipolar energy. The other method uses an additional resonance (π/4)y-pulse after the preparation period of the standard MQ NMR experiment in solids and allows one to measure the Zeeman energy. Both considered methods are sensitive to the contribution of remote spins in the interaction and to the spin system structure. The QS method is sensitive to the spin number in the molecule while the PS method gives very similar time dependencies of the intensities of MQ coherences for different spin numbers. It is shown that the use of the dipolar ordered initial state has the advantage of exciting the highest order MQ coherences in clusters of 4m identical spins, where m=1,2,3,…, that is impossible to do with the standard MQ method. MQ NMR methods based on the dipolar ordered initial states at low temperatures complement the standard NMR spectroscopy for better studying structures and dynamic processes in solids.
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Affiliation(s)
- G B Furman
- Department of Physics, Ben Gurion University, Beer Sheva 84105, Israel; Zefat College, Zefat, Israel.
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