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Song Y, Fujisaki-Manome A, Barker CH, MacFadyen A, Kessler J, Titze D, Wang J. Modeling study on oil spill transport in the Great Lakes: The unignorable impact of ice cover. J Environ Manage 2024; 358:120810. [PMID: 38593738 DOI: 10.1016/j.jenvman.2024.120810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Revised: 03/30/2024] [Accepted: 03/31/2024] [Indexed: 04/11/2024]
Abstract
The rise in oil trade and transportation has led to a continuous increase in the risk of oil spills, posing a serious worldwide concern. However, there is a lack of numerical models for predicting oil spill transport in freshwater, especially under icy conditions. To tackle this challenge, we developed a prediction system for oil with ice modeling by coupling the General NOAA Operational Modeling Environment (GNOME) model with the Great Lakes Operational Forecast System (GLOFS) model. Taking Lake Erie as a pilot study, we used observed drifter data to evaluate the performance of the coupled model. Additionally, we developed six hypothetical oil spill cases in Lake Erie, considering both with and without ice conditions during the freezing, stable, and melting seasons spanning from 2018 to 2022, to investigate the impacts of ice cover on oil spill processes. The results showed the effective performance of the coupled model system in capturing the movements of a deployed drifter. Through ensemble simulations, it was observed that the stable season with high-concentration ice had the most significant impact on limiting oil transport compared to the freezing and melting seasons, resulting in an oil-affected open water area of 49 km2 on day 5 with ice cover, while without ice cover it reached 183 km2. The stable season with high-concentration ice showed a notable reduction in the probability of oil presence in the risk map, whereas this reduction effect was less prominent during the freezing and melting seasons. Moreover, negative correlations between initial ice concentration and oil-affected open water area were consistent, especially on day 1 with a linear regression R-squared value of 0.94, potentially enabling rapid prediction. Overall, the coupled model system serves as a useful tool for simulating oil spills in the world's largest freshwater system, particularly under icy conditions, thus enhancing the formulation of effective emergency response strategies.
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Affiliation(s)
- Yang Song
- Cooperative Institute for Great Lakes Research, School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, 48109, USA.
| | - Ayumi Fujisaki-Manome
- Cooperative Institute for Great Lakes Research, School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, 48109, USA; Climate & Space Sciences and Engineering, University of Michigan, Ann Arbor, MI, 48109, USA
| | | | - Amy MacFadyen
- NOAA Office of Response and Restoration, Seattle, WA, 98115, USA
| | - James Kessler
- NOAA Great Lakes Environmental Research Laboratory, Ann Arbor, MI, 48108, USA
| | - Dan Titze
- NOAA Great Lakes Environmental Research Laboratory, Ann Arbor, MI, 48108, USA
| | - Jia Wang
- NOAA Great Lakes Environmental Research Laboratory, Ann Arbor, MI, 48108, USA
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Li J, Wu Y, Zhuo J, Wang Z. Modeling and simulation of cochlear perimodiolar electrode based on composite spring-mass model. Comput Methods Biomech Biomed Engin 2021; 25:290-297. [PMID: 34263671 DOI: 10.1080/10255842.2021.1950145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
This paper proposes, a method for the physical modeling of the perimodiolar electrode, particularly for the process of recovering its preset shape with the guide wire drawn out, based on the composite spring-mass model by employing the virtual-volumetric spring inspired from the traditional spring-mass model. Simulation experiments of modeling and virtual insertion of perimodiolar electrode were carried out. The results indicated that the mean and standard deviation of the difference between the local deformation angles of the simulated and measured sets of mass points, (1, 2, 3), (2, 3, 4), …, (13, 14, 15), were 6.34° and 5.98°, respectively. Additionally, the physical model of the perimodiolar electrode can reflect the overall morphological changes of the real perimodiolar electrode.
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Affiliation(s)
- Jianjun Li
- College of Mechanical and Electrical Engineering, China Jiliang University, Hangzhou, China
| | - Yue Wu
- College of Mechanical and Electrical Engineering, China Jiliang University, Hangzhou, China
| | - Jianye Zhuo
- College of Mechanical and Electrical Engineering, China Jiliang University, Hangzhou, China
| | - Zuo Wang
- College of Artificial Intelligence and Innovation, Ma'anshan University, Ma'anshan, China
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Kaya ZE, Yılmaz A. Modeling and simulation of an anthropomorphic hand prosthesis with an object interaction. Comput Methods Programs Biomed 2020; 183:105085. [PMID: 31568996 DOI: 10.1016/j.cmpb.2019.105085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Revised: 09/09/2019] [Accepted: 09/17/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND AND OBJECTIVE Kinematic and dynamic modeling of any physical process is critical especially for the design phase of associated control units and the prediction of their performance levels. In this paper, a dynamical model and a development frame including interactions with the objects for a tendon-driven underactuated hand are developed and examined. Using the proposed dynamic model, free movement and the object interaction of the underactuated hand can be simulated with a single, integrated simulation step in the simulation frame. METHODS Lagrangian Method is used to model the dynamic behavior of the underactuated fingers and the thumb under tendon dependency in a 3D coordinate system. Then, as an important extension to the modeling studies that can be found in the literature, the interaction of the hand with an object that co-exists in its workspace is modeled in terms of contact forces acting on the joints of the fingers. The unified dynamic model is simulated by using the Simulink platform. RESULTS The simulations showed that the adaptability of the underactuated mechanism and joint torque levels are modeled and examined realistically. The flexion movement of the fingers resulted in realistic torque levels which can be handled by commercially-off-the-shelf actuators. Various tendon forces were examined in terms of the distance of the individual phalanx to the object and their contact instants. Applying an increasing input force with 1.617 N/s ramp slope, finger flexion movement was obtained in 1s. In another simulation scenario, compliance of the underactuated mechanism to an object was examined. With 0.66 N/s tendon force input ramp, proximal, middle and distal phalanx contacted an object in 1.3 s, 2.35 s and 2.75 s, respectively. CONCLUSIONS Presented features obtained by the simulation platform are especially useful to researchers working on the development of control methods for underactuated prosthetic hands and robot manipulators. Through the simulations of experimental scenarios, a detailed analysis of dynamic responses of each finger phalanges can be carried out properly in any level of the design phase.
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Affiliation(s)
- Zahit Evren Kaya
- TUBITAK Informatics and Information Security Research Center, Turkey.
| | - Atila Yılmaz
- Department of Electrical and Electronics Engineering, Hacettepe University, Turkey.
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Gangrade V, Schatzel SJ, Harteis SP, Addis JD. Investigating the Impact of Caving on Longwall Mine Ventilation Using Scaled Physical Modeling. Min Metall Explor 2019; 36:729-740. [PMID: 31187091 PMCID: PMC6556897 DOI: 10.1007/s42461-019-0065-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Accepted: 03/26/2019] [Indexed: 06/09/2023]
Abstract
In longwall mining, ventilation is considered one of the more effective means for controlling gases and dust. In order to study longwall ventilation in a controlled environment, researchers built a unique physical model called the Longwall Instrumented Aerodynamic Model (LIAM) in a laboratory at the National Institute for Occupational Safety and Health (NIOSH) Pittsburgh Mining Research Division (PMRD) campus. LIAM is a 1:30 scale physical model geometrically designed to simulate a single longwall panel with a three-entry headgate and tailgate configuration, along with three back bleeder entries. It consists of a two-part heterogeneous gob that simulates a less compacted unconsolidated zone and more compacted consolidated zone. It has a footprint of 8.94 m (29 ft.) by 4.88 m (16 ft.), with a simulated face length of 220 m (720 ft.) in full scale. LIAM is built with critical details of the face, gob, and mining machinery. It is instrumented with pressure gauges, flow anemometers, temperature probes, a fan, and a data acquisition system. Scaling relationships are derived on the basis of Reynolds and Richardson numbers to preserve the physical and dynamic similitude. This paper discusses the findings from a study conducted in the LIAM to investigate the gob-face interaction, airflow patterns within the gob, and airflow dynamics on the face for varying roof caving characteristics. Results are discussed to show the impact of caving behind the shields on longwall ventilation.
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Affiliation(s)
- V. Gangrade
- National Institute for Occupational Safety and Health (NIOSH), 626 Cochrans Mills Rd, Pittsburgh, PA 15236, USA
| | - S. J. Schatzel
- National Institute for Occupational Safety and Health (NIOSH), 626 Cochrans Mills Rd, Pittsburgh, PA 15236, USA
| | - S. P. Harteis
- National Institute for Occupational Safety and Health (NIOSH), 626 Cochrans Mills Rd, Pittsburgh, PA 15236, USA
| | - J. D. Addis
- National Institute for Occupational Safety and Health (NIOSH), 626 Cochrans Mills Rd, Pittsburgh, PA 15236, USA
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Silva C, de Figueiredo JJS, Chichinina T, Nascimento MJS, Kirchhof L. Experimental characterization of synthetic porous orthorhombic fractured medium: A physical modeling approach. Ultrasonics 2019; 94:82-91. [PMID: 30558812 DOI: 10.1016/j.ultras.2018.11.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Revised: 11/28/2018] [Accepted: 11/30/2018] [Indexed: 06/09/2023]
Abstract
The study of fractures in subsurface is very important since they are, in some cases, the main conduits for hydrocarbon flow in a reservoir. There are many ways to study the behavior of seismic waves in different fracturing conditions, including the use of physical modeling. This method allows, among other approaches, the analysis of the behavior of seismic wave properties in complex fractured media, such as media with orthorhombic symmetry. In this work we performed ultrasonic measurements on fractured physical models with orthorhombic symmetry from which we analyzed the behavior of elastic velocities and anisotropy parameters for different number of fractures. The presented results show the efficiency of the construction methodology used in the study by presenting P- and S- wave velocity values consistent with the theory for an orthorhombic medium. It was observed that for the direction perpendicular to the fracture system the values of P and S-wave velocities were the smallest for each model, and that the velocities decreased as the number of fractures increased in all models. Furthermore, most of the ∊ and γ values show a decreasing behavior as a function of the decreasing number of cracks, being the trend curves of ∊ linear and most of the trend curves of γ quadratic. Additionally, all the ∊ parameters presented a high correlation with the γ parameters for a small number of fractures, lower than 5.
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Affiliation(s)
- Crislene Silva
- Faculty of Geophysics, Federal University of Pará, Petrophysics and Rock Physics Laboratory - Prof. Dr. Om Prakash Verma, Belém, PA, Brazil
| | - J J S de Figueiredo
- Faculty of Geophysics, Federal University of Pará, Petrophysics and Rock Physics Laboratory - Prof. Dr. Om Prakash Verma, Belém, PA, Brazil; National Institute for Petroleum Geophysics (INCT-GP), Brazil.
| | | | - Murillo J S Nascimento
- Faculty of Geophysics, Federal University of Pará, Petrophysics and Rock Physics Laboratory - Prof. Dr. Om Prakash Verma, Belém, PA, Brazil
| | - Leo Kirchhof
- Faculty of Geophysics, Federal University of Pará, Petrophysics and Rock Physics Laboratory - Prof. Dr. Om Prakash Verma, Belém, PA, Brazil
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Abstract
RNA polymerase (RNAP) is, in its elongation phase, an emblematic example of a molecular motor whose activity is highly sensitive to DNA supercoiling. After a review of DNA supercoiling basic features, we discuss how supercoiling controls polymerase velocity, while being itself modified by polymerase activity. This coupling is supported by single-molecule measurements. Physical modeling allows us to describe quantitatively how supercoiling and torsional constraints mediate a mechanical coupling between adjacent polymerases. On this basis, we obtain a description that may explain the existence and functioning of RNAP convoys.
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Affiliation(s)
- Annick Lesne
- Laboratoire de Physique Théorique de la Matière Condensée (LPTMC), UMR 7600 CNRS, Sorbonne Université, Paris, France.,Institut de Génétique Moléculaire de Montpellier, UMR 5535 CNRS, Montpellier, France.,Université de Montpellier, Montpellier, France.,GDR 3536 CNRS, Sorbonne Université, Paris, France
| | - Jean-Marc Victor
- Laboratoire de Physique Théorique de la Matière Condensée (LPTMC), UMR 7600 CNRS, Sorbonne Université, Paris, France. .,Institut de Génétique Moléculaire de Montpellier, UMR 5535 CNRS, Montpellier, France. .,Université de Montpellier, Montpellier, France. .,GDR 3536 CNRS, Sorbonne Université, Paris, France.
| | - Edouard Bertrand
- Institut de Génétique Moléculaire de Montpellier, UMR 5535 CNRS, Montpellier, France.,Université de Montpellier, Montpellier, France
| | - Eugenia Basyuk
- Institut de Génétique Moléculaire de Montpellier, UMR 5535 CNRS, Montpellier, France.,Université de Montpellier, Montpellier, France
| | - Maria Barbi
- Laboratoire de Physique Théorique de la Matière Condensée (LPTMC), UMR 7600 CNRS, Sorbonne Université, Paris, France.,GDR 3536 CNRS, Sorbonne Université, Paris, France
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Barba AA, Cascone S, Caccavo D, Lamberti G, Chiarappa G, Abrami M, Grassi G, Grassi M, Tomaiuolo G, Guido S, Brucato V, Carfì Pavia F, Ghersi G, La Carrubba V, Abbiati RA, Manca D. Engineering approaches in siRNA delivery. Int J Pharm 2017; 525:343-58. [PMID: 28213276 DOI: 10.1016/j.ijpharm.2017.02.032] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2016] [Revised: 02/10/2017] [Accepted: 02/11/2017] [Indexed: 12/18/2022]
Abstract
siRNAs are very potent drug molecules, able to silence genes involved in pathologies development. siRNAs have virtually an unlimited therapeutic potential, particularly for the treatment of inflammatory diseases. However, their use in clinical practice is limited because of their unfavorable properties to interact and not to degrade in physiological environments. In particular they are large macromolecules, negatively charged, which undergo rapid degradation by plasmatic enzymes, are subject to fast renal clearance/hepatic sequestration, and can hardly cross cellular membranes. These aspects seriously impair siRNAs as therapeutics. As in all the other fields of science, siRNAs management can be advantaged by physical-mathematical descriptions (modeling) in order to clarify the involved phenomena from the preparative step of dosage systems to the description of drug-body interactions, which allows improving the design of delivery systems/processes/therapies. This review analyzes a few mathematical modeling approaches currently adopted to describe the siRNAs delivery, the main procedures in siRNAs vectors' production processes and siRNAs vectors' release from hydrogels, and the modeling of pharmacokinetics of siRNAs vectors. Furthermore, the use of physical models to study the siRNAs vectors' fate in blood stream and in the tissues is presented. The general view depicts a framework maybe not yet usable in therapeutics, but with promising possibilities for forthcoming applications.
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Pasquet C, Gunkel-Grillon P, Laporte-Magoni C, Serres A, Quiniou T, Rocca F, Monna F, Losno R, van Oort F, Chateau C. Alternative dry separation of PM 10 from soils for characterization by kinetic extraction: example of new Caledonian mining soils. Environ Sci Pollut Res Int 2016; 23:25105-25113. [PMID: 27677999 DOI: 10.1007/s11356-016-7617-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2016] [Accepted: 09/07/2016] [Indexed: 06/06/2023]
Abstract
A simple new device for dry separation of fine particulate matter from bulk soil samples is presented here. It consists of a stainless steel tube along which a nitrogen flow is imposed, resulting in the displacement of particles. Taking into account particle transport, fluid mechanics, and soil sample composition, a tube 6-m long, with a 0.04-m diameter, was found best adapted for PM10 separation. The device rapidly produced several milligrams of particulate matter, on which chemical extractions with EDTA were subsequently performed to study the kinetic parameters of extractable metals. New Caledonian mining soils were chosen here, as a case-study. Although the easily extracted metal pool represents only 0.5-6.4 % of the total metal content for the elements studied (Ni, Co, Mn), the total concentrations are extremely high. This pool is therefore far from negligible, and can be troublesome in the environment. This dry technique for fine particle separation from bulk parent soil eliminates the metal-leaching risks inherent in wet filtration and should therefore ensure safe assessment of environmental quality in fine-textured, metal-contaminated soils.
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Affiliation(s)
- Camille Pasquet
- PPME, Université de la Nouvelle-Calédonie, BP R4, 98851, Nouméa Cedex, Nouvelle-Calédonie, France.
| | - Peggy Gunkel-Grillon
- PPME, Université de la Nouvelle-Calédonie, BP R4, 98851, Nouméa Cedex, Nouvelle-Calédonie, France
| | - Christine Laporte-Magoni
- PPME, Université de la Nouvelle-Calédonie, BP R4, 98851, Nouméa Cedex, Nouvelle-Calédonie, France
| | - Arnaud Serres
- PPME, Université de la Nouvelle-Calédonie, BP R4, 98851, Nouméa Cedex, Nouvelle-Calédonie, France
| | - Thomas Quiniou
- PPME, Université de la Nouvelle-Calédonie, BP R4, 98851, Nouméa Cedex, Nouvelle-Calédonie, France
| | - François Rocca
- PPME, Université de la Nouvelle-Calédonie, BP R4, 98851, Nouméa Cedex, Nouvelle-Calédonie, France
| | - Fabrice Monna
- UMR 6298, ArTeHis, Université de Bourgogne - Franche Comté - CNRS-Culture, 6 bd Gabriel, Bat. Gabriel, 21000, Dijon, France
| | - Remi Losno
- Institut de Physique du Globe de Paris (IPGP), Sorbonne Paris Cité, UMR CNRS 7154, Université Paris Diderot, 1 rue Jussieu, 75013, Paris, France
| | - Folkert van Oort
- UMR 1402 Ecosys, INRA-AgroParisTech, pôle Ecotoxicologie, Centre de Versailles-Grignon, RD 10, 78026, Versailles Cedex, France
| | - Carmela Chateau
- Université de Bourgogne-Franche Comté, UFR SVTE, 6 bd Gabriel, Bat. Gabriel, 21000, Dijon, France
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Santos LK, de Figueiredo JJS, da Silva CB. A study of ultrasonic physical modeling of isotropic media based on dynamic similitude. Ultrasonics 2016; 70:227-237. [PMID: 27227781 DOI: 10.1016/j.ultras.2016.05.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Revised: 05/09/2016] [Accepted: 05/12/2016] [Indexed: 06/05/2023]
Abstract
For decades, seismic and ultrasonic physical modeling has been used to help the geophysicists to understand the phenomena related to the elastic wave propagation on isotropic and anisotropic media. Most of the published works related to physical modeling use physical similitudes between model and field (geological environment) only in the geometric and, sometimes, in the kinematics sense. The dynamic similitude is approximately or, most of the time, not obeyed due to the difficulty to reproduce, in laboratory, the forces and tensions excited inside the earth when elastic waves propagate. In this work, we use expressions for dynamic similitude related to the ratio between stiffness coefficients or Lamé parameters. The resulting expression for dynamic similitude shows that this type of similitude has multiple solutions in the context of dynamic stress (non-uniqueness problem). However, the regularization of this problem can be reached by controlling porosity and clay content. Ultrasonic measurements (elastic) as well as petrophysical measurements (density, porosity and clay content) in synthetic sandstone rocks show how difficult it is to reproduce experimentally the three physical similarities studied in this work.
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Affiliation(s)
- Leo K Santos
- Faculty of Geophysics, Federal University of Pará, Petrophysics and Rock Physics Laboratory - Prof. Dr. Om Prakash Verma, Belém, PA, Brazil.
| | - J J S de Figueiredo
- Faculty of Geophysics, Federal University of Pará, Petrophysics and Rock Physics Laboratory - Prof. Dr. Om Prakash Verma, Belém, PA, Brazil; National Institute of Petroleum Geophysics (INCT-GP), Brazil.
| | - Carolina B da Silva
- Faculty of Geophysics, Federal University of Pará, Petrophysics and Rock Physics Laboratory - Prof. Dr. Om Prakash Verma, Belém, PA, Brazil.
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