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Vishwanath D, Shanmugam A, Sundaresh M, Hariharan A, Saraf S, Bahadur U, Veeramachaneni V, Chandrasekhar N, Pillai V V, Bushan V, Shetty V, Subramaniam N, Kuriakose MA, Shivaprasad KS, Khadilkar K, Suresh A, Sum S, Lakhsmikantha A, Rekha PR, Zaidi SN, Gupta V, Kannan S. Development of a Low-cost NGS Test for the Evaluation of Thyroid Nodules. Indian J Surg Oncol 2022; 13:17-22. [PMID: 35462651 PMCID: PMC8986928 DOI: 10.1007/s13193-019-01000-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Accepted: 09/25/2019] [Indexed: 10/25/2022] Open
Abstract
Ultrasound-guided fine needle aspiration cytology (FNAC) is the preferred method of identifying malignancy in palpable thyroid nodules using the Bethesda reporting system. However, in around 30-40% of FNACs (Bethesda categories III, IV, and V), the results are indeterminate and surgery is required to confirm malignancy. Out of those who undergo surgery, only 10-40% of patients in these categories are found to have malignancies, thus proving surgery to be unnecessary for some patients or to be incomplete in others. While molecular testing on thyroid FNAC material is part of the American Thyroid Association (ATA) guidelines in evaluating thyroid nodules, it is currently unavailable in India due to cost constraints. In this study, we prospectively collected FNAC samples from sixty-nine patients who presented with palpable thyroid nodules. We designed a cost-effective next-generation sequencing (NGS) test to query multiple variants in the DNA and RNA isolated from the fine needle aspirate. The identification of oncogenic variants was considered to be indicative of malignancy, and confirmed by surgical histopathology. The panel showed an overall sensitivity of 81.25% and a specificity of 100%, while in the case of Bethesda categories III, IV, and V, the sensitivity was higher (87.5%) and the specificity was established at 100%. The panel could thereby serve as a rule-in test for the diagnosis of thyroid cancer and therefore help identify patients who require surgery, especially in the indeterminate Bethesda categories III, IV, and V.
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Affiliation(s)
- Divya Vishwanath
- grid.465051.30000 0004 1799 1787Strand Life Sciences Pvt. Ltd., 5th Floor, Kirloskar Business Park, Bellary Road, Hebbal, Bangalore, 560024 India
| | - Ashwini Shanmugam
- grid.465051.30000 0004 1799 1787Strand Life Sciences Pvt. Ltd., 5th Floor, Kirloskar Business Park, Bellary Road, Hebbal, Bangalore, 560024 India
| | - Mahima Sundaresh
- grid.465051.30000 0004 1799 1787Strand Life Sciences Pvt. Ltd., 5th Floor, Kirloskar Business Park, Bellary Road, Hebbal, Bangalore, 560024 India
| | - Arun Hariharan
- grid.465051.30000 0004 1799 1787Strand Life Sciences Pvt. Ltd., 5th Floor, Kirloskar Business Park, Bellary Road, Hebbal, Bangalore, 560024 India
| | - Shradha Saraf
- grid.465051.30000 0004 1799 1787Strand Life Sciences Pvt. Ltd., 5th Floor, Kirloskar Business Park, Bellary Road, Hebbal, Bangalore, 560024 India
| | - Urvashi Bahadur
- grid.465051.30000 0004 1799 1787Strand Life Sciences Pvt. Ltd., 5th Floor, Kirloskar Business Park, Bellary Road, Hebbal, Bangalore, 560024 India
| | - Vamsi Veeramachaneni
- grid.465051.30000 0004 1799 1787Strand Life Sciences Pvt. Ltd., 5th Floor, Kirloskar Business Park, Bellary Road, Hebbal, Bangalore, 560024 India
| | - Naveen Chandrasekhar
- grid.416504.20000 0004 1796 819XDepartment of Head & Neck Surgical Oncology & Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Vijay Pillai V
- grid.416504.20000 0004 1796 819XDepartment of Head & Neck Surgical Oncology & Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Vidhya Bushan
- grid.416504.20000 0004 1796 819XDepartment of Head & Neck Surgical Oncology & Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Vivek Shetty
- grid.416504.20000 0004 1796 819XDepartment of Head & Neck Surgical Oncology & Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Narayana Subramaniam
- grid.416504.20000 0004 1796 819XDepartment of Head & Neck Surgical Oncology & Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Moni Abraham Kuriakose
- grid.416504.20000 0004 1796 819XDepartment of Head & Neck Surgical Oncology & Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - K. S. Shivaprasad
- grid.416504.20000 0004 1796 819XDepartment of Head & Neck Surgical Oncology & Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Kranti Khadilkar
- grid.416504.20000 0004 1796 819XDepartment of Head & Neck Surgical Oncology & Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Amritha Suresh
- grid.506019.bMazumdar Shaw Medical Foundation, 258/A, Hosur Road Anekal, Taluk, Bommasandra Industrial Area, Bangalore, Karnataka 560099 India
| | - Sum Sum
- grid.506019.bMazumdar Shaw Medical Foundation, 258/A, Hosur Road Anekal, Taluk, Bommasandra Industrial Area, Bangalore, Karnataka 560099 India
| | - Akhila Lakhsmikantha
- grid.416504.20000 0004 1796 819XDepartment of Pathology & Laboratory Services, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Pobbisetty Radhakrishnagupta Rekha
- grid.416504.20000 0004 1796 819XDepartment of Pathology & Laboratory Services, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Shaesta Naseem Zaidi
- grid.416504.20000 0004 1796 819XDepartment of Pathology & Laboratory Services, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
| | - Vaijayanti Gupta
- grid.465051.30000 0004 1799 1787Strand Life Sciences Pvt. Ltd., 5th Floor, Kirloskar Business Park, Bellary Road, Hebbal, Bangalore, 560024 India
| | - Subramanian Kannan
- grid.416504.20000 0004 1796 819XDepartment of Endocrinology, Narayana Health City, 258/A, Bommasandra Industrial Area Anekal Taluk, Hosur Rd, Bangalore, 560099 India
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Dorri Giv M, Bahreini Toosi MH, Aghamiri SMR, Akbari F, Taeb S. Calculation of Thyroid Dose with Planner System and Evaluation of Thyroid Function after Radiotherapy for Patients with Breast Cancer. J Biomed Phys Eng 2016; 6:220-234. [PMID: 28144591 PMCID: PMC5219573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2015] [Accepted: 10/26/2015] [Indexed: 06/06/2023]
Abstract
BACKGROUND Much research has widely been conducted into thyroid hormones levels following radiotherapy for breast cancer. Consequently, in this study, we evaluated to relate the rate of thyroid hormones levels with the dose distribution among breast cancer patients. MATERIAL AND METHODS Thirty patients were treated with 4-field breast cancer radiotherapy. The dose volume histograms, the volume percentage of the thyroid absorbing respectively 20, 30, 40 and 50 Gy were then estimated (V20, V30, V40 and V50) together with the individual average thyroid dose over the whole gland derived from their computed tomography-based treatment plans. Then, in serum samples triiodothyronine [T3], thyroxine [T4], thyroid-stimulating hormone [TSH] of the patients were measured before and after radiotherapy. RESULTS There were no significant differences in thyroid hormones levels before and after radiotherapy for patients with breast cancer (P value >.05). CONCLUSION On the balance, we understood that thyroid stimulating hormones levels did not change before and after cancer breast radiotherapy.
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Affiliation(s)
- M Dorri Giv
- Radiology and Radiotherapy Department, Faculty of Paramedical, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - M H Bahreini Toosi
- Medical Physics Research Center, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - S M R Aghamiri
- Radiology and Radiotherapy Department, Faculty of Paramedical, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - F Akbari
- Medical Physics Research Center, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - S Taeb
- MSc of Radiation Biology and Orotection, Shiraz University of Medical Science, Shiraz, Iran
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Dorri Giv M, Bahreini Toosi M, Aghamiri S, Akbari F, Taeb S. Calculation of Thyroid Dose with Planner System and Evaluation of Thyroid Function after Radiotherapy for Patients with Breast Cancer. J Biomed Phys Eng 2016; 6:229-234. [PMID: 28144592 PMCID: PMC5251202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2015] [Accepted: 10/26/2015] [Indexed: 12/01/2022]
Abstract
BACKGROUND Much research has widely been conducted into thyroid hormones levels following radiotherapy for breast cancer. Consequently, in this study, we evaluated to relate the rate of thyroid hormones levels with the dose distribution among breast cancer patients. MATERIAL AND METHODS Thirty patients were treated with 4-field breast cancer radiotherapy. The dose volume histograms, the volume percentage of the thyroid absorbing respectively 20, 30, 40 and 50 Gy were then estimated (V20, V30, V40 and V50) together with the individual average thyroid dose over the whole gland derived from their computed tomography-based treatment plans. Then, in serum samples triiodothyronine [T3], thyroxine [T4], thyroid-stimulating hormone [TSH] of the patients were measured before and after radiotherapy. RESULTS There were no significant differences in thyroid hormones levels before and after radiotherapy for patients with breast cancer (P value >.05). CONCLUSION On the balance, we understood that thyroid stimulating hormones levels did not change before and after cancer breast radiotherapy.
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Affiliation(s)
- M. Dorri Giv
- Radiology and Radiotherapy Department, Faculty of Paramedical, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - M.H. Bahreini Toosi
- Medical Physics Research Center, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - S.M.R. Aghamiri
- Radiology and Radiotherapy Department, Faculty of Paramedical, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - F. Akbari
- Medical Physics Research Center, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - S. Taeb
- MSc of Radiation Biology and Orotection, Shiraz University of Medical Science, Shiraz, Iran
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