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Chen H, Shi X, Ren L, Zhuo H, Zeng L, Qin Q, Wan Y, Sangdan W, Zhou L. Identification of the miRNA-mRNA regulatory network associated with radiosensitivity in esophageal cancer based on integrative analysis of the TCGA and GEO data. BMC Med Genomics 2022; 15:249. [PMID: 36456979 PMCID: PMC9714096 DOI: 10.1186/s12920-022-01392-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 11/07/2022] [Indexed: 12/03/2022] Open
Abstract
BACKGROUND The current study set out to identify the miRNA-mRNA regulatory networks that influence the radiosensitivity in esophageal cancer based on the The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases. METHODS Firstly, esophageal cancer-related miRNA-seq and mRNA-seq data were retrieved from the TCGA database, and the mRNA dataset of esophageal cancer radiotherapy was downloaded from the GEO database to analyze the differential expressed miRNAs (DEmiRNAs) and mRNAs (DEmRNAs) in radiosensitive and radioresistant samples, followed by the construction of the miRNA-mRNA regulatory network and Gene Ontology and KEGG enrichment analysis. Additionally, a prognostic risk model was constructed, and its accuracy was evaluated by means of receiver operating characteristic analysis. RESULTS A total of 125 DEmiRNAs and 42 DEmRNAs were closely related to the radiosensitivity in patients with esophageal cancer. Based on 47 miRNA-mRNA interactions, including 21 miRNAs and 21 mRNAs, the miRNA-mRNA regulatory network was constructed. The prognostic risk model based on 2 miRNAs (miR-132-3p and miR-576-5p) and 4 mRNAs (CAND1, ZDHHC23, AHR, and MTMR4) could accurately predict the prognosis of esophageal cancer patients. Finally, it was verified that miR-132-3p/CAND1/ZDHHC23 and miR-576-5p/AHR could affect the radiosensitivity in esophageal cancer. CONCLUSION Our study demonstrated that miR-132-3p/CAND1/ZDHHC23 and miR-576-5p/AHR were critical molecular pathways related to the radiosensitivity of esophageal cancer.
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Affiliation(s)
- Hongmin Chen
- grid.412901.f0000 0004 1770 1022Cancer Center, West China Hospital of Sichuan University, No. 37 Guoxue Lane, Wuhou District, Chengdu, 610041 People’s Republic of China
| | - Xiaoxiao Shi
- grid.13291.380000 0001 0807 1581Department of Medical Oncology, Chengdu Shang Jin Nan Fu Hospital (West China Hospital, S.C.U.), Chengdu, 611730 People’s Republic of China
| | - Li Ren
- grid.412901.f0000 0004 1770 1022Cancer Center, West China Hospital of Sichuan University, No. 37 Guoxue Lane, Wuhou District, Chengdu, 610041 People’s Republic of China
| | - Hongyu Zhuo
- grid.412901.f0000 0004 1770 1022Cancer Center, West China Hospital of Sichuan University, No. 37 Guoxue Lane, Wuhou District, Chengdu, 610041 People’s Republic of China
| | - Li Zeng
- grid.412901.f0000 0004 1770 1022Cancer Center, West China Hospital of Sichuan University, No. 37 Guoxue Lane, Wuhou District, Chengdu, 610041 People’s Republic of China
| | - Qing Qin
- grid.412901.f0000 0004 1770 1022Cancer Center, West China Hospital of Sichuan University, No. 37 Guoxue Lane, Wuhou District, Chengdu, 610041 People’s Republic of China
| | - Yuming Wan
- grid.412901.f0000 0004 1770 1022Cancer Center, West China Hospital of Sichuan University, No. 37 Guoxue Lane, Wuhou District, Chengdu, 610041 People’s Republic of China
| | - Wangmu Sangdan
- Department of Oncology, People’s Hospital of Tibet Autonomous Region, Lhasa, 850000 People’s Republic of China
| | - Lin Zhou
- grid.412901.f0000 0004 1770 1022Cancer Center, West China Hospital of Sichuan University, No. 37 Guoxue Lane, Wuhou District, Chengdu, 610041 People’s Republic of China ,grid.13291.380000 0001 0807 1581Department of Thoracic Oncology, State Key Laboratory of Biotherapy, Sichuan University, No. 1, Keyuan 4th Road, Gaopeng Avenue, Chengdu, 610041 People’s Republic of China
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