Monitoring the Spread of Grapevine Viruses in Vineyards of Contrasting Agronomic Practices: A Metagenomic Investigation

This study investigated the transmission of grapevine viruses, specifically grapevine red blotch virus (GRBV) and grapevine Pinot gris virus (GPGV), in vineyards in Niagara Region, Ontario, Canada. Forty sentinel vines that were confirmed free of GRBV and GPGV by both high-throughput sequencing (HTS) and endpoint polymerase chain reaction (PCR) were introduced to two vineyards (one organic and one conventional) that were heavily infected with both GRBV and GPGV. Four months post-introduction, the sentinel vines were relocated to a phytotron. The HTS results from 15 months post-introduction revealed a widespread infection of GPGV among the sentinel vines but did not detect any GRBV. The GPGV infection rate of sentinel vines in the organic vineyard (13/18) was higher than in the conventional vineyard (1/19). The possibility of an alternative viral reservoir was assessed by testing the most abundant plants in between rows (Medicago sativa, Trifolium repens, Cirsium arvense and Taraxacum officinale), perennial plants in border areas (Fraxinus americana, Ulmus americana, Rhamnus cathartica) and wild grape (unknown Vitis sp.). The HTS result showed that cover crops and perennial plants did not harbor any grapevine viruses, while 4/5 wild grapes tested positive for GPGV but not GRBV. A pairwise sequence identity analysis revealed high similarities between the GPGV isolates found in the established vines on the vineyard and the newly contracted GPGV isolates in the sentinel vines, implicating a recent transmission event. This work provides novel insights into the spread of grapevine viruses in Niagara Region and is also the first direct proof of the spread of GPGV in natural vineyard conditions in North America.

A DNA Plasmid-Based Approach for Efficient Synthesis of Sacbrood Virus Infectious Clones within Host Cells

RNA viruses are often cited as a significant factor affecting the populations of both domestic honey bees and wild pollinators. To expedite the development of effective countermeasures against these viruses, a more comprehensive understanding of virus biology necessitates extensive collaboration among scientists from diverse research fields. While the infectious virus clone is a robust tool for studying virus diseases, the current methods for synthesizing infectious clones of bee-infecting RNA viruses entail the in vitro transcription of the viral genome RNA in 8-10 kb, presenting challenges in reproducibility and distribution. This article reports on the synthesis of an infectious clone of the Chinese variant sacbrood virus (SBV) using a DNA plasmid containing an Autographa californica multiple nucleopolyhedrovirus (AcMNPV) immediate-early protein (IE1) promoter to trigger transcription of the downstream viral genome within hosts. The results demonstrate that the IE1-SBV plasmid can synthesize SBV clones in a widely used lepidopteran immortal cell line (Sf9) and honey bee pupae. Furthermore, the negative strand of the clone was detected in both Sf9 cells and honey bee pupae, indicating active infection and replication. However, the transfection of Sf9 cells was observed in only a limited proportion (less than 10%) of the cells, and the infection did not appear to spread to adjacent cells or form infective virions. The injection of honey bee pupae with 2500 ng of the IE1-SBV plasmid resulted in high infection rates in Apis cerana pupae but low rates in A. mellifera pupae, although the dosage was comparatively high compared with other studies using in vitro transcribed viral RNA. Our findings suggest that the synthesis of bee-infecting RNA viruses using DNA plasmids is feasible, albeit requiring additional optimization. However, this method holds substantial potential for facilitating the production of clones with various sequence modifications, enabling the exploration of viral gene functions and biology. The ease of distributing infectious clones in DNA plasmid form may foster collaboration among scientists in applying the clone to bee biology, ecology, and behavior, ultimately offering a comprehensive approach to managing virus diseases in the future.

Weeds Harbor Fusarium Species that Cause Malformation Disease of Economically Important Trees in Western Mexico

Mango malformation disease (MMD) caused by Fusarium spp. is an important limiting factor in most production areas worldwide. Fusarium mexicanum and F. pseudocircinatum have been reported as causing MMD in Mexico. These two pathogens also cause a similar disease in Swietenia macrophylla (big-leaf mahogany malformation disease) in central western Mexico, and F. pseudocircinatum was recently reported as causing malformation disease in Tabebuia rosea (rosy trumpet) in the same region. These studies suggest that additional plant species, including weeds, might be hosts of these pathogens. The role that weed hosts might have in the disease cycle is unknown. The objectives of this work were to recover Fusarium isolates from understory vegetation in mango orchards with MMD, identify the Fusarium isolates through DNA sequence data, and determine whether F. mexicanum is capable of inducing disease in the weedy legume Senna uniflora (oneleaf senna). Additional objectives in this work were to compare Fusarium isolates recovered from weeds and mango trees in the same orchards by characterizing their phylogenetic relationships, assessing in vitro production of mycotoxins, and identifying their mating type idiomorph. A total of 59 Fusarium isolates from five species complexes were recovered from apical and lateral buds from four weed species. Two of the species within the F. fujikuroi species complex are known to cause MMD in Mexico. Trichothecene production was detected in five isolates, including F. sulawense and F. irregulare in the F. incarnatum-equiseti species complex and F. boothii in the F. sambucinum species complex. Both mating types were present among mango and weed isolates. This is the first report of herbaceous hosts harboring Fusarium species that cause mango malformation in Mexico. The information provided should prove valuable for further study of the epidemiological role of weeds in MMD and help manage the disease.

Viral Reservoir Capacity of Wild Prunus Alternative Hosts of Plum Pox Virus Through Multiple Cycles of Transmission and Dormancy

Plum pox virus (PPV) is a significant pathogen of Prunus worldwide and is known for having a broad experimental host range. Many of these hosts represent epidemiological risks as potential wild viral reservoirs. A comparative study of the PPV reservoir capacity of three commonly found native North American species, western choke cherry (Prunus virginiana var. demissa), black cherry (Prunus serotina), and American plum (Prunus americana) was conducted. Pennsylvania isolates of PPV-D were transmitted from the original host peach (Prunus persica cv. GF305) to all three species. Viral accumulation and transmission rates to alternative hosts and peach were monitored over the course of five vegetative growth and cold induced dormancy (CID) cycles. The three alternative host species demonstrated differences in their ability to maintain PPV-D and the likelihood of transmission to additional alternative hosts or back transmission to peach. Western choke cherry had low (5.8%) initial infection levels, PPV-D was not transmissible to additional western choke cherry, and transmission of PPV-D from western choke cherry to peach was only possible before the first CID cycle. Black cherry had intermediate initial infection levels (26.6%) but did not maintain high infection levels after repeated CID cycles. Conversely, American plum had a high level (50%) of initial infection that was not significantly different from initial infection in peach (72.2%) and maintained moderate levels (15 to 25%) of infection and PPV-D transmission to both American plum and peach through all five cycles of CID. Our results indicate that American plum has the greatest potential to act as a reservoir host for Pennsylvania isolates of PPV-D.

Modular development enables rapid design of media for alternative hosts

Developing media to sustain cell growth and production is an essential and ongoing activity in bioprocess development. Modifications to media can often address host or product‐specific challenges, such as low productivity or poor product quality. For other applications, systematic design of new media can facilitate the adoption of new industrially relevant alternative hosts. Despite manifold existing methods, common approaches for optimization often remain time and labor‐intensive. We present here a novel approach to conventional media blending that leverages stable, simple, concentrated stock solutions to enable rapid improvement of measurable phenotypes of interest. We applied this modular methodology to generate high‐performing media for two phenotypes of interest: biomass accumulation and heterologous protein production, using high‐throughput, milliliter‐scale batch fermentations of Pichia pastoris as a model system. In addition to these examples, we also created a flexible open‐source package for modular blending automation on a low‐cost liquid handling system to facilitate wide use of this method. Our modular blending method enables rapid, flexible media development, requiring minimal labor investment and prior knowledge of the host organism, and should enable developing improved media for other hosts and phenotypes of interest.

Performance of Sesamia nonagrioides on cultivated and wild host plants: Implications for Bt maize resistance management

BACKGROUND

Sesamia nonagrioides is an important maize pest in the Mediterranean basin that is effectively controlled by Cry1Ab-expressing maize (Bt maize). The continued cultivation of Bt maize in Spain exerts high selection pressure on the target pests, which could lead to the development of resistance. Provision of refuges of non-Bt plants is an essential component in the high-dose/refuge (HDR) strategy to delay resistance evolution. Here we analyze the suitability of cultivated (rice and sorghum) and wild (Johnsongrass, cattail, common reed and giant reed) plants, reported as hosts of S. nonagrioides, for larval development and oviposition of this pest compared to maize, and we evaluate their potential role in delaying resistance development to Bt maize.

RESULTS

Bioassays conducted with plant pieces or whole plants showed that the larval cycle could only be completed in the three cultivated plants and in Johnsongrass. Females showed a strong preference for ovipositing on maize in comparison with sorghum or rice. Although young larvae consumed more sorghum than maize in two-choice bioassays, both larvae and adults had a better performance (shorter larval period and higher pupal weight, fecundity and fertility) when larvae fed on maize throughout their larval stage than when they fed on sorghum or rice.

CONCLUSION

None of the alternative hosts of S. nonagrioides tested here should be considered as natural unstructured refuges within the HDR strategy for Bt maize and this pest in Spain, as some of the necessary requirements to fulfill this strategy would not be met. © 2020 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

Trapping system comparisons for and factors affecting populations of Drosophila suzukii and Zaprionus indianus in winter-grown strawberry

BACKGROUND

Drosophila suzukii (Matsumura) is a major fruit pest in temperate regions worldwide, but in subtropical Florida, winter-grown strawberries have not been severely affected. Zaprionus indianus Gupta is another invasive drosophilid species and a pest of some tropical fruits. To improve monitoring, trapping systems for D. suzukii and Z. indianus were tested. Morphology, ovarian status and the suitability and availability of non-crop hosts as possible D. suzukii population-limiting factors were assessed.

RESULTS

Traps with commercial attractants captured more D. suzukii but fewer Z. indianus than those with a homemade mixture. In central and northern Florida, < 10% and 30-80% of D. suzukii, respectively, exhibited darker, winter morph coloration, and 55-75% of females from central Florida were carrying mature and/or immature eggs. Adult D. suzukii were reared from fruits of two of 28 potential hosts: elderberry (Sambucus nigra) and nightshade (Solanum americanum). Nightshade, but not elderberry, was common on field perimeters (21 and six of 36 fields, respectively). Traps placed in wooded or partially wooded field edges yielded the most D. suzukii.

CONCLUSION

Florida strawberry is at risk of D. suzukii infestation, as flies were captured throughout the growing season. However, fly captures remained relatively low, peaking at 1.5 flies per trap per day. In central Florida, the low availability and suitability of non-crop hosts likely limit population growth. The finding of few flies in northern Florida may additionally be attributable to a greater proportion of flies displaying winter morph coloration than in central Florida. © 2018 Society of Chemical Industry.

Confronting inconsistencies in the amphibian-chytridiomycosis system: implications for disease management

Chytridiomycosis, caused by the pathogenic fungus Batrachochytrium dendrobatidis (Bd), is one of the largest threats to wildlife and is putatively linked to the extirpation of numerous amphibians. Despite over a decade of research on Bd, conflicting results from a number of studies make it difficult to forecast where future epizootics will occur and how to manage this pathogen effectively. Here, we emphasize how resolving these conflicts will advance Bd management and amphibian conservation efforts. We synthesize current knowledge on whether Bd is novel or endemic, whether amphibians exhibit acquired resistance to Bd, the importance of host resistance versus tolerance to Bd, and how biotic (e.g. species richness) and abiotic factors (e.g. climate change) affect Bd abundance. Advances in our knowledge of amphibian-chytrid interactions might inform the management of fungal pathogens in general, which are becoming more common and problematic globally.

Detection of Ralstonia solanacearum in Irrigation Ponds and Aquatic Weeds Associated with the Ponds in North Florida

The discovery of exotic Ralstonia solanacearum biovar 1 strains on geranium in north Florida led to a concern that this strain may have become established. Therefore, we monitored irrigation ponds and potential alternative aquatic weeds from 2002 to 2005 for the presence of this strain. We report that this strain, possibly originating from the Caribbean, has become established in several ponds in Gadsden County, FL. Cladistic taxonomy was used to subclassify the bacterium at the species level into four groups or phylotypes based on multiplex polymerase chain reaction of the internal transcribed spacer (ITS) region. The bacterium was further divided into sequevars by sequencing the endoglucanase gene (egl). The strains were determined to belong to phylotype II/sequevar 4 NPB (nonpathogenic on banana) that was recently reported in Martinique. Partial sequencing of the egl followed by phylogenetic analysis placed the new Caribbean strains in a different clade than the typical Florida endemic strains. Pulsed-field gel electrophoresis (PFGE) revealed different haplotypes upon comparison of the collected pond strains and the Floridian strains. Based on PFGE polymorphism, egl sequencing, and phylogenetic analysis, the Caribbean strains were shown to be identical to the strain isolated from infected geranium plants. Experiments were undertaken to monitor R. solanacearum in irrigation ponds and associated weeds. R. solanacearum was detected in surface-disinfested common aquatic weeds growing in the irrigation ponds, including Hydrocotyle ranunculoides (dollar weed) and Polygonum pennsylvanicum (Pennsylvania smart weed). Both weeds were latently infected and showed no signs of wilt when collected. Two different Hydrocotyle spp. were artificially inoculated with R. solanacearum under greenhouse conditions and both developed symptoms 14 days post inoculation (dpi) and the bacterium was recovered from the tissues 42 dpi. There was a positive correlation between ambient temperature and R. solanacearum populations in irrigation water, as previously shown by other researchers.