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De Nisco G, Hartman EMJ, Torta E, Daemen J, Chiastra C, Gallo D, Morbiducci U, Wentzel JJ. Predicting Lipid-Rich Plaque Progression in Coronary Arteries Using Multimodal Imaging and Wall Shear Stress Signatures. Arterioscler Thromb Vasc Biol 2024; 44:976-986. [PMID: 38328935 DOI: 10.1161/atvbaha.123.320337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Accepted: 01/26/2024] [Indexed: 02/09/2024]
Abstract
BACKGROUND Plaque composition and wall shear stress (WSS) magnitude act as well-established players in coronary plaque progression. However, WSS magnitude per se does not completely capture the mechanical stimulus to which the endothelium is subjected, since endothelial cells experience changes in the WSS spatiotemporal configuration on the luminal surface. This study explores WSS profile and lipid content signatures of plaque progression to identify novel biomarkers of coronary atherosclerosis. METHODS Thirty-seven patients with acute coronary syndrome underwent coronary computed tomography angiography, near-infrared spectroscopy intravascular ultrasound, and optical coherence tomography of at least 1 nonculprit vessel at baseline and 1-year follow-up. Baseline coronary artery geometries were reconstructed from intravascular ultrasound and coronary computed tomography angiography and combined with flow information to perform computational fluid dynamics simulations to assess the timeaveraged WSS magnitude (TAWSS) and the variability in the contraction/expansion action exerted by WSS on the endothelium, which can be assessed by the topological shear variation index (TSVI). Plaque progression was measured as intravascular ultrasound-derived percentage atheroma volume change at 1-year follow-up (Δplaque atheroma volume). Plaque composition information was extracted from near-infrared spectroscopy and optical coherence tomography. RESULTS Exposure to high TSVI and low TAWSS was associated with higher plaque progression (4.00±0.69% and 3.60±0.62%, respectively). Plaque composition acted synergistically with TSVI or TAWSS, resulting in the highest plaque progression (≥5.90%) at locations where lipid-rich content is exposed to high TSVI or low TAWSS. CONCLUSIONS Luminal exposure to high TSVI, solely or combined with a lipid-rich plaque phenotype, is associated with enhanced plaque progression at 1-year follow-up. Where plaque progression occurred, low TAWSS was also observed. These findings suggest TSVI, in addition to low TAWSS, as a potential biomechanical predictor for plaque progression, showing promise for clinical translation to improve patient prognosis.
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Affiliation(s)
- Giuseppe De Nisco
- PolitoMed Laboratory, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy (G.D.N., E.T., C.C., D.G., U.M.)
| | - Eline M J Hartman
- Department of Cardiology, Biomedical Engineering, Erasmus MC, Rotterdam, the Netherlands (E.M.J.H., J.D., J.J.W.)
| | - Elena Torta
- PolitoMed Laboratory, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy (G.D.N., E.T., C.C., D.G., U.M.)
| | - Joost Daemen
- Department of Cardiology, Biomedical Engineering, Erasmus MC, Rotterdam, the Netherlands (E.M.J.H., J.D., J.J.W.)
| | - Claudio Chiastra
- PolitoMed Laboratory, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy (G.D.N., E.T., C.C., D.G., U.M.)
| | - Diego Gallo
- PolitoMed Laboratory, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy (G.D.N., E.T., C.C., D.G., U.M.)
| | - Umberto Morbiducci
- PolitoMed Laboratory, Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Turin, Italy (G.D.N., E.T., C.C., D.G., U.M.)
| | - Jolanda J Wentzel
- Department of Cardiology, Biomedical Engineering, Erasmus MC, Rotterdam, the Netherlands (E.M.J.H., J.D., J.J.W.)
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Armour C, Guo B, Saitta S, Guo D, Liu Y, Fu W, Dong Z, Xu XY. The Role of Multiple Re-Entry Tears in Type B Aortic Dissection Progression: A Longitudinal Study Using a Controlled Swine Model. J Endovasc Ther 2024; 31:104-114. [PMID: 35852439 PMCID: PMC10773162 DOI: 10.1177/15266028221111295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
PURPOSE False lumen (FL) expansion often occurs in type B aortic dissection (TBAD) and has been associated with the presence of re-entry tears. This longitudinal study aims to elucidate the role of re-entry tears in the progression of TBAD using a controlled swine model, by assessing aortic hemodynamics through combined imaging and computational modeling. MATERIALS AND METHODS A TBAD swine model with a primary entry tear at 7 cm distal to the left subclavian artery was created in a previous study. In the current study, reintervention was carried out in this swine model to induce 2 additional re-entry tears of approximately 5 mm in diameter. Computed tomography (CT) and 4-dimensional (4D) flow magnetic resonance imaging (MRI) scans were taken at multiple follow-ups before and after reintervention. Changes in aortic volume were measured on CT scans, and hemodynamic parameters were evaluated based on dynamic data acquired with 4D-flow MRI and computational fluid dynamics simulations incorporating all available in vivo data. RESULTS Morphological analysis showed FL growth of 20% following the initial TBAD-growth stabilized after the creation of additional tears and eventually FL volume reduced by 6%. Increasing the number of re-entry tears from 1 to 2 caused flow redistribution, with the percentage of true lumen (TL) flow increasing from 56% to 78%; altered local velocities; reduced wall shear stress surrounding the tears; and led to a reduction in FL pressure and pressure difference between the 2 lumina. CONCLUSION This study combined extensive in vivo imaging data with sophisticated computational methods to show that additional re-entry tears can alter dissection hemodynamics through redistribution of flow between the TL and FL. This helps to reduce FL pressure, which could potentially stabilize aortic growth and lead to reversal of FL expansion. This work provides a starting point for further study into the use of fenestration in controlling undesirable FL expansion. CLINICAL IMPACT Aortic growth and false lumen (FL) patency are associated with the presence of re-entry tears in type B aortic dissection (TBAD) patients. Guidelines on how to treat re-entry tears are lacking, especially with regards to the control and prevention of FL expansion. Through a combined imagining and computational hemodynamics study of a controlled swine model, we found that increasing the number of re-entry tears reduced FL pressure and cross lumen pressure difference, potentially stabilising aortic growth and leading to FL reduction. Our findings provide a starting point for further study into the use of fenestration in controlling undesirable FL expansion.
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Affiliation(s)
- Chlöe Armour
- Department of Chemical Engineering, Imperial College London, London, UK
| | - Baolei Guo
- Department of Vascular Surgery, Zhongshan Hospital, Institute of Vascular Surgery, Fudan University, Shanghai, China
- Department of Vascular Surgery, Qingpu Branch of Zhongshan Hospital Affiliated to Fudan University, Shanghai, China
| | - Simone Saitta
- Department of Chemical Engineering, Imperial College London, London, UK
- Department of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy
| | - Daqiao Guo
- Department of Vascular Surgery, Zhongshan Hospital, Institute of Vascular Surgery, Fudan University, Shanghai, China
| | - Yifan Liu
- Department of Vascular Surgery, Zhongshan Hospital, Institute of Vascular Surgery, Fudan University, Shanghai, China
| | - Weiguo Fu
- Department of Vascular Surgery, Zhongshan Hospital, Institute of Vascular Surgery, Fudan University, Shanghai, China
| | - Zhihui Dong
- Department of Vascular Surgery, Zhongshan Hospital, Institute of Vascular Surgery, Fudan University, Shanghai, China
| | - Xiao Yun Xu
- Department of Chemical Engineering, Imperial College London, London, UK
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Bäumler K, Phillips EH, Grande Gutiérrez N, Fleischmann D, Marsden AL, Goergen CJ. Longitudinal investigation of aortic dissection in mice with computational fluid dynamics. Comput Methods Biomech Biomed Engin 2023:1-14. [PMID: 37897230 DOI: 10.1080/10255842.2023.2274281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 09/30/2023] [Indexed: 10/29/2023]
Abstract
Predicting late adverse events in aortic dissections is challenging. One commonly observed risk factor is partial thrombosis of the false lumen. In this study we investigated false lumen thrombus progression over 7 days in four mice with angiotensin II-induced aortic dissection. We performed computational fluid dynamic simulations with subject-specific boundary conditions from velocity and pressure measurements. We investigated endothelial cell activation potential, mean velocity, thrombus formation potential, and other hemodynamic factors. Our findings support the hypothesis that flow stagnation is the predominant hemodynamic factor driving a large thrombus ratio in false lumina, particularly those with a single fenestration.
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Affiliation(s)
| | - Evan H Phillips
- Weldon School of Biomedical Engineering, Purdue University, IN, USA
- Department of Pharmaceutical Sciences, University of IL at Chicago, IL, USA
| | | | | | - Alison L Marsden
- Department of Bioengineering, Stanford University, CA, USA
- Department of Pediatrics (Cardiology), Stanford University, CA, USA
| | - Craig J Goergen
- Weldon School of Biomedical Engineering, Purdue University, IN, USA
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Lyu Z, King K, Rezaeitaleshmahalleh M, Pienta D, Mu N, Zhao C, Zhou W, Jiang J. Deep-learning-based image segmentation for image-based computational hemodynamic analysis of abdominal aortic aneurysms: a comparison study. Biomed Phys Eng Express 2023; 9:067001. [PMID: 37625388 DOI: 10.1088/2057-1976/acf3ed] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 08/25/2023] [Indexed: 08/27/2023]
Abstract
Computational hemodynamics is increasingly being used to quantify hemodynamic characteristics in and around abdominal aortic aneurysms (AAA) in a patient-specific fashion. However, the time-consuming manual annotation hinders the clinical translation of computational hemodynamic analysis. Thus, we investigate the feasibility of using deep-learning-based image segmentation methods to reduce the time required for manual segmentation. Two of the latest deep-learning-based image segmentation methods, ARU-Net and CACU-Net, were used to test the feasibility of automated computer model creation for computational hemodynamic analysis. Morphological features and hemodynamic metrics of 30 computed tomography angiography (CTA) scans were compared between pre-dictions and manual models. The DICE score for both networks was 0.916, and the correlation value was above 0.95, indicating their ability to generate models comparable to human segmentation. The Bland-Altman analysis shows a good agreement between deep learning and manual segmentation results. Compared with manual (computational hemodynamics) model recreation, the time for automated computer model generation was significantly reduced (from ∼2 h to ∼10 min). Automated image segmentation can significantly reduce time expenses on the recreation of patient-specific AAA models. Moreover, our study showed that both CACU-Net and ARU-Net could accomplish AAA segmentation, and CACU-Net outperformed ARU-Net in terms of accuracy and time-saving.
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Affiliation(s)
- Zonghan Lyu
- Biomedical Engineering, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Joint Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, Michigan, MI, United States of America
| | - Kristin King
- Biomedical Engineering, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Joint Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, Michigan, MI, United States of America
| | - Mostafa Rezaeitaleshmahalleh
- Biomedical Engineering, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Joint Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, Michigan, MI, United States of America
| | - Drew Pienta
- Joint Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Applied Computing, Michigan Technological University, Houghton, Michigan, MI, United States of America
| | - Nan Mu
- Biomedical Engineering, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Joint Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, Michigan, MI, United States of America
| | - Chen Zhao
- Joint Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Applied Computing, Michigan Technological University, Houghton, Michigan, MI, United States of America
| | - Weihua Zhou
- Joint Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Applied Computing, Michigan Technological University, Houghton, Michigan, MI, United States of America
| | - Jingfeng Jiang
- Biomedical Engineering, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Joint Center for Biocomputing and Digital Health, Health Research Institute and Institute of Computing and Cybernetics, Michigan Technological University, Houghton, Michigan, MI, United States of America
- Department of Radiology, Mayo Clinic, Rochester, Minnesota, MN, United States of America
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Katz S, Caiazzo A, Moreau B, Wilbrandt U, Brüning J, Goubergrits L, John V. Impact of turbulence modeling on the simulation of blood flow in aortic coarctation. Int J Numer Method Biomed Eng 2023; 39:e3695. [PMID: 36914373 DOI: 10.1002/cnm.3695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 02/10/2023] [Accepted: 02/20/2023] [Indexed: 05/13/2023]
Abstract
Numerical simulations of pulsatile blood flow in an aortic coarctation require the use of turbulence modeling. This paper considers three models from the class of large eddy simulation (LES) models (Smagorinsky, Vreman, σ -model) and one model from the class of variational multiscale models (residual-based) within a finite element framework. The influence of these models on the estimation of clinically relevant biomarkers used to assess the degree of severity of the pathological condition (pressure difference, secondary flow degree, normalized flow displacement, wall shear stress) is investigated in detail. The simulations show that most methods are consistent in terms of severity indicators such as pressure difference and stenotic velocity. Moreover, using second-order velocity finite elements, different turbulence models might lead to considerably different results concerning other clinically relevant quantities such as wall shear stresses. These differences may be attributed to differences in numerical dissipation introduced by the turbulence models.
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Affiliation(s)
- Sarah Katz
- Numerical Mathematics and Scientific Computing Research Group, Weierstrass Institute for Applied Analysis and Stochastics (WIAS), Berlin, Germany
| | - Alfonso Caiazzo
- Numerical Mathematics and Scientific Computing Research Group, Weierstrass Institute for Applied Analysis and Stochastics (WIAS), Berlin, Germany
| | - Baptiste Moreau
- Numerical Mathematics and Scientific Computing Research Group, Weierstrass Institute for Applied Analysis and Stochastics (WIAS), Berlin, Germany
| | - Ulrich Wilbrandt
- Numerical Mathematics and Scientific Computing Research Group, Weierstrass Institute for Applied Analysis and Stochastics (WIAS), Berlin, Germany
| | - Jan Brüning
- Deutsches Herzzentrum der Charité, Institute of Computer-assisted Cardiovascular Medicine, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Berlin, Germany
| | - Leonid Goubergrits
- Deutsches Herzzentrum der Charité, Institute of Computer-assisted Cardiovascular Medicine, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, Berlin, Germany
- Einstein Center Digital Future, Berlin, Germany
| | - Volker John
- Numerical Mathematics and Scientific Computing Research Group, Weierstrass Institute for Applied Analysis and Stochastics (WIAS), Berlin, Germany
- Department of Mathematics and Computer Science, Freie Universität Berlin, Berlin, Germany
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Scarsoglio S, Ridolfi L. Different Impact of Heart Rate Variability in the Deep Cerebral and Central Hemodynamics at Rest: An in silico Investigation. Front Neurosci 2021; 15:600574. [PMID: 34079433 PMCID: PMC8165247 DOI: 10.3389/fnins.2021.600574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Accepted: 04/19/2021] [Indexed: 11/18/2022] Open
Abstract
Background: Heart rate variability (HRV), defined as the variability between consecutive heartbeats, is a surrogate measure of cardiac vagal tone. It is widely accepted that a decreased HRV is associated to several risk factors and cardiovascular diseases. However, a possible association between HRV and altered cerebral hemodynamics is still debated, suffering from HRV short-term measures and the paucity of high-resolution deep cerebral data. We propose a computational approach to evaluate the deep cerebral and central hemodynamics subject to physiological alterations of HRV in an ideal young healthy patient at rest. Methods: The cardiovascular-cerebral model is composed by electrical components able to reproduce the response of the different cardiovascular regions and their features. The model was validated over more than thirty studies and recently exploited to understand the hemodynamic mechanisms between cardiac arrythmia and cognitive deficit. Three configurations (baseline, increased HRV, and decreased HRV) are built based on the standard deviation (SDNN) of RR beats. For each configuration, 5,000 RR beats are simulated to investigate the occurrence of extreme values, alteration of the regular hemodynamics pattern, and variation of mean perfusion/pressure levels. Results: In the cerebral circulation, our results show that HRV has overall a stronger impact on pressure than flow rate mean values but similarly alters pressure and flow rate in terms of extreme events. By comparing reduced and increased HRV, this latter induces a higher probability of altered mean and extreme values, and is therefore more detrimental at distal cerebral level. On the contrary, at central level a decreased HRV induces a higher cardiac effort without improving the mechano-contractile performance, thus overall reducing the heart efficiency. Conclusions: Present results suggest that: (i) the increase of HRV per se does not seem to be sufficient to trigger a better cerebral hemodynamic response; (ii) by accounting for both central and cerebral circulations, the optimal HRV configuration is found at baseline. Given the relation inversely linking HRV and HR, the presence of this optimal condition can contribute to explain why the mean HR of the general population settles around the baseline value (70 bpm).
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Affiliation(s)
- Stefania Scarsoglio
- Department of Mechanical and Aerospace Engineering, Politecnico di Torino, Torino, Italy
| | - Luca Ridolfi
- Department of Environmental, Land and Infrastructure Engineering, Politecnico di Torino, Torino, Italy
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Haßler S, Pauli L, Behr M. The variational multiscale formulation for the fully-implicit log-morphology equation as a tensor-based blood damage model. Int J Numer Method Biomed Eng 2019; 35:e3262. [PMID: 31493337 DOI: 10.1002/cnm.3262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Revised: 08/20/2019] [Accepted: 09/01/2019] [Indexed: 06/10/2023]
Abstract
We derive a variational multiscale (VMS) finite element formulation for a viscoelastic, tensor-based blood damage model. The tensor equation is numerically stabilized by a logarithmic shape tensor description that prevents unphysical, negative eigenvalues. The resulting VMS stabilization terms for this so-called log-morph equation are presented together with their special numerical treatment. Results for a 2D rotating stirrer test case obtained from log-morph simulations with both SUPG and VMS stabilization show significantly improved numerical behavior if compared with Galerkin/least squares (GLS) stabilized untransformed morphology simulation results. The newly proposed method is also successfully applied to a state-of-the-art centrifugal ventricular assist device (VAD), and clear advantages of the VMS stabilization compared with the SUPG-stabilized formulation are presented.
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Affiliation(s)
- Stefan Haßler
- Chair for Computational Analysis of Technical Systems (CATS), Center for Simulation and Data Science (JARA-CSD), RWTH Aachen University, Aachen, 52056, Germany
| | - Lutz Pauli
- Chair for Computational Analysis of Technical Systems (CATS), Center for Simulation and Data Science (JARA-CSD), RWTH Aachen University, Aachen, 52056, Germany
| | - Marek Behr
- Chair for Computational Analysis of Technical Systems (CATS), Center for Simulation and Data Science (JARA-CSD), RWTH Aachen University, Aachen, 52056, Germany
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Mut F, Chung BJ, Chudyk J, Lylyk P, Kadirvel R, Kallmes DF, Cebral JR. Image-based modeling of blood flow in cerebral aneurysms treated with intrasaccular flow diverting devices. Int J Numer Method Biomed Eng 2019; 35:e3202. [PMID: 30891958 PMCID: PMC6687514 DOI: 10.1002/cnm.3202] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2018] [Revised: 01/18/2019] [Accepted: 03/17/2019] [Indexed: 05/20/2023]
Abstract
Modeling the flow dynamics in cerebral aneurysms after the implantation of intrasaccular devices is important for understanding the relationship between flow conditions created immediately posttreatment and the subsequent outcomes. This information, ideally available a priori based on computational modeling prior to implantation, is valuable to identify which aneurysms will occlude immediately and which aneurysms will likely remain patent and would benefit from a different procedure or device. In this report, a methodology for modeling the hemodynamics in intracranial aneurysms treated with intrasaccular flow diverting devices is described. This approach combines an image-guided, virtual device deployment within patient-specific vascular models with an immersed boundary method on adaptive unstructured grids. A partial mesh refinement strategy that reduces the number of mesh elements near the aneurysm dome where the flow conditions are largely stagnant was compared with the full refinement strategy that refines the mesh everywhere around the device wires. The results indicate that using the partial mesh refinement approach is adequate for analyzing the posttreatment hemodynamics, at a reduced computational cost. The results obtained on a series of four cerebral aneurysms treated with different intrasaccular devices were in good qualitative agreement with angiographic observations. Promising results were obtained relating posttreatment flow conditions and outcomes of treatments with intrasaccular devices, which need to be confirmed on larger series.
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Affiliation(s)
- Fernando Mut
- Bioengineering Department, Volgenau School of Engineering, George Mason University, Fairfax, Virginia, USA
| | - Bong Jae Chung
- Department of Mathematical Sciences, Montclair State University, Montclair, New Jersey, USA
| | - Jorge Chudyk
- Interventional Neuroradiology, Clinica ENERI, Buenos Aires, Argentina
| | - Pedro Lylyk
- Interventional Neuroradiology, Clinica ENERI, Buenos Aires, Argentina
| | | | - David F Kallmes
- Interventional Neuroradiology, Mayo Clinic, Rochester, Minnesota, USA
| | - Juan R Cebral
- Bioengineering Department, Volgenau School of Engineering, George Mason University, Fairfax, Virginia, USA
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Zimmermann J, Demedts D, Mirzaee H, Ewert P, Stern H, Meierhofer C, Menze B, Hennemuth A. Wall shear stress estimation in the aorta: Impact of wall motion, spatiotemporal resolution, and phase noise. J Magn Reson Imaging 2018; 48:718-728. [PMID: 29607574 DOI: 10.1002/jmri.26007] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 02/24/2018] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Wall shear stress (WSS) presents an important parameter for assessing blood flow characteristics and evaluating flow-mediated lesions in the aorta. PURPOSE To investigate the robustness of WSS and oscillatory shear index (OSI) estimation based on 4D flow MRI against vessel wall motion, spatiotemporal resolution, and velocity encoding (VENC). STUDY TYPE Simulated and prospective. POPULATION Synthetic 4D flow MRI data of the aorta, simulated using the Lattice-Boltzmann method; in vivo 4D flow MRI data of the aorta from healthy volunteers (n = 11) and patients with congenital heart defects (n = 17). FIELD STRENGTH/SEQUENCE 1.5T; 4D flow MRI with PEAK-GRAPPA acceleration and prospective electrocardiogram triggering. ASSESSMENT Predicated upon 3D cubic B-splines interpolation of the image velocity field, WSS was estimated in mid-systole, early-diastole, and late-diastole and OSI was derived. We assessed the impact of spatiotemporal resolution and phase noise, and compared results based on tracked-using deformable registration-and static vessel wall location. STATISTICAL TESTS Bland-Altman analysis to assess WSS/OSI differences; Hausdorff distance (HD) to assess wall motion; and Pearson's correlation coefficient (PCC) to assess correlation of HD with WSS. RESULTS Synthetic data results show systematic over-/underestimation of WSS when different spatial resolution (mean ± 1.96 SD up to -0.24 ± 0.40 N/m2 and 0.5 ± 1.38 N/m2 for 8-fold and 27-fold voxel size, respectively) and VENC-depending phase noise (mean ± 1.96 SD up to 0.31 ± 0.12 N/m2 and 0.94 ± 0.28 N/m2 for 2-fold and 4-fold VENC increase, respectively) are given. Neglecting wall motion when defining the vessel wall perturbs WSS estimates to a considerable extent (1.96 SD up to 1.21 N/m2 ) without systematic over-/underestimation (Bland-Altman mean range -0.06 to 0.05). DATA CONCLUSION In addition to sufficient spatial resolution and velocity to noise ratio, accurate tracking of the vessel wall is essential for reliable image-based WSS estimation and should not be neglected if wall motion is present. LEVEL OF EVIDENCE 2 Technical Efficacy: Stage 2 J. Magn. Reson. Imaging 2018.
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Affiliation(s)
- Judith Zimmermann
- Department of Computer Science, Technical University of Munich, Munich, Germany
- Department of Pediatric Cardiology and Congenital Heart Defects, German Heart Center at Technical University of Munich, Munich, Germany
| | - Daniel Demedts
- Fraunhofer MEVIS Institute for Medical Image Computing, Bremen, Germany
| | - Hanieh Mirzaee
- Fraunhofer MEVIS Institute for Medical Image Computing, Bremen, Germany
- Institute for Computational and Imaging Science in Cardiovascular Medicine, Charité Universitätsmedizin, Berlin, Germany
| | - Peter Ewert
- Department of Pediatric Cardiology and Congenital Heart Defects, German Heart Center at Technical University of Munich, Munich, Germany
| | - Heiko Stern
- Department of Pediatric Cardiology and Congenital Heart Defects, German Heart Center at Technical University of Munich, Munich, Germany
| | - Christian Meierhofer
- Department of Pediatric Cardiology and Congenital Heart Defects, German Heart Center at Technical University of Munich, Munich, Germany
| | - Bjoern Menze
- Department of Computer Science, Technical University of Munich, Munich, Germany
| | - Anja Hennemuth
- Fraunhofer MEVIS Institute for Medical Image Computing, Bremen, Germany
- Institute for Computational and Imaging Science in Cardiovascular Medicine, Charité Universitätsmedizin, Berlin, Germany
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10
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Lin CY, Veneziani A, Ruthotto L. Numerical methods for polyline-to-point-cloud registration with applications to patient-specific stent reconstruction. Int J Numer Method Biomed Eng 2018; 34:e2934. [PMID: 29073332 DOI: 10.1002/cnm.2934] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Revised: 05/08/2017] [Accepted: 10/15/2017] [Indexed: 06/07/2023]
Abstract
We present novel numerical methods for polyline-to-point-cloud registration and their application to patient-specific modeling of deployed coronary artery stents from image data. Patient-specific coronary stent reconstruction is an important challenge in computational hemodynamics and relevant to the design and improvement of the prostheses. It is an invaluable tool in large-scale clinical trials that computationally investigate the effect of new generations of stents on hemodynamics and eventually tissue remodeling. Given a point cloud of strut positions, which can be extracted from images, our stent reconstruction method aims at finding a geometrical transformation that aligns a model of the undeployed stent to the point cloud. Mathematically, we describe the undeployed stent as a polyline, which is a piecewise linear object defined by its vertices and edges. We formulate the nonlinear registration as an optimization problem whose objective function consists of a similarity measure, quantifying the distance between the polyline and the point cloud, and a regularization functional, penalizing undesired transformations. Using projections of points onto the polyline structure, we derive novel distance measures. Our formulation supports most commonly used transformation models including very flexible nonlinear deformations. We also propose 2 regularization approaches ensuring the smoothness of the estimated nonlinear transformation. We demonstrate the potential of our methods using an academic 2D example and a real-life 3D bioabsorbable stent reconstruction problem. Our results show that the registration problem can be solved to sufficient accuracy within seconds using only a few number of Gauss-Newton iterations.
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Affiliation(s)
- Claire Yilin Lin
- Department of Mathematics, University of Michigan, Ann Arbor, 48109, MI, USA
| | - Alessandro Veneziani
- Department of Mathematics and Computer Science, Emory University, 400 Dowman Dr NE, Atlanta, 30322, GA, USA
- School of Advanced Studies IUSS Pavia, Piazza della Vittoria 15, 27100 Pavia, Italy
| | - Lars Ruthotto
- Department of Mathematics and Computer Science, Emory University, 400 Dowman Dr NE, Atlanta, 30322, GA, USA
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11
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Puelz C, Čanić S, Rivière B, Rusin CG. Comparison of reduced models for blood flow using Runge-Kutta discontinuous Galerkin methods. Appl Numer Math 2017; 115:114-141. [PMID: 29081563 PMCID: PMC5654593 DOI: 10.1016/j.apnum.2017.01.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
One-dimensional blood flow models take the general form of nonlinear hyperbolic systems but differ in their formulation. One class of models considers the physically conserved quantities of mass and momentum, while another class describes mass and velocity. Further, the averaging process employed in the model derivation requires the specification of the axial velocity profile; this choice differentiates models within each class. Discrepancies among differing models have yet to be investigated. In this paper, we comment on some theoretical differences among models and systematically compare them for physiologically relevant vessel parameters, network topology, and boundary data. In particular, the effect of the velocity profile is investigated in the cases of both smooth and discontinuous solutions, and a recommendation for a physiological model is provided. The models are discretized by a class of Runge-Kutta discontinuous Galerkin methods.
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Affiliation(s)
- Charles Puelz
- Rice University, Department of Computational and Applied Mathematics
| | | | - Béatrice Rivière
- Rice University, Department of Computational and Applied Mathematics
| | - Craig G Rusin
- Baylor College of Medicine, Department of Pediatric Cardiology
- Texas Children's Hospital, Department of Pediatric Medicine-Cardiology
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12
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Arthurs CJ, Agarwal P, John AV, Dorfman AL, Grifka RG, Figueroa CA. Reproducing Patient-Specific Hemodynamics in the Blalock-Taussig Circulation Using a Flexible Multi-Domain Simulation Framework: Applications for Optimal Shunt Design. Front Pediatr 2017; 5:78. [PMID: 28491863 PMCID: PMC5405677 DOI: 10.3389/fped.2017.00078] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Accepted: 03/31/2017] [Indexed: 11/13/2022] Open
Abstract
For babies born with hypoplastic left heart syndrome, several open-heart surgeries are required. During Stage I, a Norwood procedure is performed to construct an appropriate circulation to both the systemic and the pulmonary arteries. The pulmonary arteries receive flow from the systemic circulation, often using a Blalock-Taussig (BT) shunt between the innominate artery and the right pulmonary artery. This procedure causes significantly disturbed flow in the pulmonary arteries. In this study, we use computational hemodynamic simulations to demonstrate its capacity for examining the properties of the flow through and near the BT shunt. Initially, we construct a computational model which produces blood flow and pressure measurements matching the clinical magnetic resonance imaging (MRI) and catheterization data. Achieving this required us to determine the level of BT shunt occlusion; because the occlusion is below the MRI resolution, this information is difficult to recover without the aid of computational simulations. We determined that the shunt had undergone an effective diameter reduction of 22% since the time of surgery. Using the resulting geometric model, we show that we can computationally reproduce the clinical data. We, then, replace the BT shunt with a hypothetical alternative shunt design with a flare at the distal end. Investigation of the impact of the shunt design reveals that the flare can increase pulmonary pressure by as much as 7% and flow by as much as 9% in the main pulmonary branches, which may be beneficial to the pulmonary circulation.
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Affiliation(s)
- Christopher J Arthurs
- Division of Imaging Sciences and Biomedical Engineering, King's College London, King's Health Partners, St. Thomas' Hospital, London, UK
| | - Pradyumn Agarwal
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA
| | - Anna V John
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA
| | - Adam L Dorfman
- Department of Pediatric Cardiology, University of Michigan Health System, Ann Arbor, MI, USA
| | - Ronald G Grifka
- Department of Pediatric Cardiology, University of Michigan Health System, Ann Arbor, MI, USA
| | - C Alberto Figueroa
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.,Department of Surgery, University of Michigan, Ann Arbor, MI, USA
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13
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Simakov SS, Gamilov TM, Kopylov FY, Vasilevskii YV. Evaluation of Hemodynamic Significance of Stenosis in Multiple Involvement of the Coronary Vessels by Mathematical Simulation. Bull Exp Biol Med 2016; 162:111-114. [PMID: 27878495 DOI: 10.1007/s10517-016-3558-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2016] [Indexed: 10/20/2022]
Abstract
We use a mathematical model of one-dimensional blood flow in a network of blood vessels for in silico evaluation of hemodynamic significance of stenoses in multivessel coronary disease. Two cases were addressed: two stenosed vessels with different diameters and with the same degree of occlusion and two consecutive stenoses in the same vessel. We show that two criteria for the evaluation of hemodynamic significance based on the degree of stenosis and based on fractional flow reserve can give contradictory indications for surgical intervention. We also show that fractional flow reserve computation originally proposed for a single stenosis should be modified in the case of multivessel stenotic disease.
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Affiliation(s)
- S S Simakov
- Moscow Institute of Physics and Technology (MIPT), Moscow, Russia. .,I. M. Sechenov First Moscow State Medical University, Moscow, Russia.
| | - T M Gamilov
- Moscow Institute of Physics and Technology (MIPT), Moscow, Russia.,Institute of Numerical Mathematics, Russian Academy of Sciences, Moscow, Russia
| | - F Yu Kopylov
- Institute of Numerical Mathematics, Russian Academy of Sciences, Moscow, Russia.,I. M. Sechenov First Moscow State Medical University, Moscow, Russia
| | - Yu V Vasilevskii
- Moscow Institute of Physics and Technology (MIPT), Moscow, Russia.,Institute of Numerical Mathematics, Russian Academy of Sciences, Moscow, Russia
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14
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Abstract
Mathematical modeling at the level of the full cardiovascular system requires the numerical approximation of solutions to a one-dimensional nonlinear hyperbolic system describing flow in a single vessel. This model is often simulated by computationally intensive methods like finite elements and discontinuous Galerkin, while some recent applications require more efficient approaches (e.g. for real-time clinical decision support, phenomena occurring over multiple cardiac cycles, iterative solutions to optimization/inverse problems, and uncertainty quantification). Further, the high speed of pressure waves in blood vessels greatly restricts the time step needed for stability in explicit schemes. We address both cost and stability by presenting an efficient and unconditionally stable method for approximating solutions to diagonal nonlinear hyperbolic systems. Theoretical analysis of the algorithm is given along with a comparison of our method to a discontinuous Galerkin implementation. Lastly, we demonstrate the utility of the proposed method by implementing it on small and large arterial networks of vessels whose elastic and geometrical parameters are physiologically relevant.
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Affiliation(s)
- Sebastian Acosta
- Department of Pediatric Cardiology, Baylor College of Medicine, Texas
| | - Charles Puelz
- Department of Computational and Applied Mathematics, Rice University, Texas
| | - Béatrice Riviére
- Department of Computational and Applied Mathematics, Rice University, Texas
| | - Daniel J. Penny
- Department of Pediatric Cardiology, Baylor College of Medicine, Texas
- Department of Pediatric Medicine – Cardiology, Texas Children’s Hospital
| | - Craig G. Rusin
- Department of Pediatric Cardiology, Baylor College of Medicine, Texas
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15
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Caputo M, Chiastra C, Cianciolo C, Cutrì E, Dubini G, Gunn J, Keller B, Migliavacca F, Zunino P. Simulation of oxygen transfer in stented arteries and correlation with in-stent restenosis. Int J Numer Method Biomed Eng 2013; 29:1373-1387. [PMID: 23996860 DOI: 10.1002/cnm.2588] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2012] [Revised: 07/10/2013] [Accepted: 07/20/2013] [Indexed: 06/02/2023]
Abstract
Computational models are used to study the combined effect of biomechanical and biochemical factors on coronary in-stent restenosis, which is a postoperative remodeling and regrowth pathology of the stented arteries. More precisely, we address numerical simulations, on the basis of Navier-Stokes and mass transport equations, to study the role of perturbed wall shear stresses and reduced oxygen concentration in a geometrical model reconstructed from a real porcine artery treated with a stent. Joining in vivo and in silico tools of investigation has multiple benefits in this case. On one hand, the geometry of the arterial wall and of the stent closely correspond to a real implanted configuration. On the other hand, the inspection of histological tissue samples informs us on the location and intensity of in-stent restenosis. As a result, we are able to correlate geometrical factors, such as the axial variation of the artery diameter and its curvature; the numerical quantification of biochemical stimuli, such as wall shear stresses; and the availability of oxygen to the inner layers of the artery, with the appearance of in-stent restenosis. This study shows that the perturbation of the vessel curvature could induce hemodynamic conditions that stimulate undesired arterial remodeling.
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Affiliation(s)
- M Caputo
- LaBS, Department of Chemistry, Materials and Chemical Engineering 'Giulio Natta', Politecnico di Milano, Italy
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Pauli L, Nam J, Pasquali M, Behr M. Transient stress-based and strain-based hemolysis estimation in a simplified blood pump. Int J Numer Method Biomed Eng 2013; 29:1148-60. [PMID: 23922311 PMCID: PMC4166438 DOI: 10.1002/cnm.2576] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2013] [Revised: 04/30/2013] [Accepted: 06/06/2013] [Indexed: 05/12/2023]
Abstract
We compare two approaches to numerical estimation of mechanical hemolysis in a simplified blood pump model. The stress-based model relies on the instantaneous shear stress in the blood flow, whereas the strain-based model uses an additional tensor equation to relate distortion of red blood cells to a shear stress measure. We use the newly proposed least-squares finite element method (LSFEM) to prevent negative concentration fields and show a stable and volume preserving LSFEM for the tensor equation. Application of both models to a simplified centrifugal blood pump at three different operating conditions shows that the stress-based model overestimates the rate of hemolysis. The strain-based model is found to deliver lower hemolysis rates because it incorporates a more detailed description of biophysical phenomena into the simulation process.
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Affiliation(s)
- Lutz Pauli
- Chair for Computational Analysis of Technical Systems (CATS), RWTH Aachen University, 52056 Aachen, Germany
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