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Özer B, Karlsen MA, Thatcher Z, Lan L, McMahon B, Strickland PR, Westrip SP, Sang KS, Billing DG, Ravnsbæk DB, Billinge SJL. Towards a machine-readable literature: finding relevant papers based on an uploaded powder diffraction pattern. Acta Crystallogr A Found Adv 2022; 78:386-394. [PMID: 36047395 PMCID: PMC9434602 DOI: 10.1107/s2053273322007483] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Accepted: 07/21/2022] [Indexed: 02/05/2023] Open
Abstract
A prototype application for machine-readable literature is investigated. The program is called pyDataRecognition and serves as an example of a data-driven literature search, where the literature search query is an experimental data set provided by the user. The user uploads a powder pattern together with the radiation wavelength. The program compares the user data to a database of existing powder patterns associated with published papers and produces a rank ordered according to their similarity score. The program returns the digital object identifier and full reference of top-ranked papers together with a stack plot of the user data alongside the top-five database entries. The paper describes the approach and explores successes and challenges.
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Affiliation(s)
- Berrak Özer
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY, 10027, USA,Correspondence e-mail: ,
| | - Martin A. Karlsen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, DK-5230 Odense M, Denmark
| | - Zachary Thatcher
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY, 10027, USA
| | - Ling Lan
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY, 10027, USA
| | - Brian McMahon
- International Union of Crystallography, Chester, CH1 2HU, UK
| | | | | | - Koh S. Sang
- International Union of Crystallography, Chester, CH1 2HU, UK
| | - David G. Billing
- School of Chemistry, University of the Witwatersrand, Private Bag 3, PO WITS, 2050, South Africa
| | | | - Simon J. L. Billinge
- Department of Applied Physics and Applied Mathematics, Columbia University, New York, NY, 10027, USA,Condensed Matter Physics and Materials Science Department, Brookhaven National Laboratory, Upton, NY, 11973, USA,Correspondence e-mail: ,
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