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Eskandari S, Koltai J, László I, Kürti J. Molecular Dynamics Study of Nanoribbon Formation by Encapsulating Cyclic Hydrocarbon Molecules inside Single-Walled Carbon Nanotube. Nanomaterials (Basel) 2024; 14:627. [PMID: 38607161 PMCID: PMC11013334 DOI: 10.3390/nano14070627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 03/22/2024] [Accepted: 03/27/2024] [Indexed: 04/13/2024]
Abstract
Carbon nanotubes filled with organic molecules can serve as chemical nanoreactors. Recent experimental results show that, by introducing cyclic hydrocarbon molecules inside carbon nanotubes, they can be transformed into nanoribbons or inner tubes, depending on the experimental conditions. In this paper, we present our results obtained as a continuation of our previous molecular dynamics simulation work. In our previous work, the initial geometry consisted of independent carbon atoms. Now, as an initial condition, we have placed different molecules inside a carbon nanotube (18,0): C5H5 (fragment of ferrocene), C5, C5+H2; C6H6 (benzene), C6, C6+H2; C20H12 (perylene); and C24H12 (coronene). The simulations were performed using the REBO-II potential of the LAMMPS software package, supplemented with a Lennard-Jones potential between the nanotube wall atoms and the inner atoms. The simulation proved difficult due to the slow dynamics of the H abstraction. However, with a slight modification of the parameterization, it was possible to model the formation of carbon nanoribbons inside the carbon nanotube.
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Affiliation(s)
- Somayeh Eskandari
- Department of Biological Physics, Eötvös University, 1117 Budapest, Hungary; (S.E.); (J.K.)
| | - János Koltai
- Department of Biological Physics, Eötvös University, 1117 Budapest, Hungary; (S.E.); (J.K.)
| | - István László
- Department of Theoretical Physics, Budapest University of Technology and Economics, 1111 Budapest, Hungary;
| | - Jenő Kürti
- Department of Biological Physics, Eötvös University, 1117 Budapest, Hungary; (S.E.); (J.K.)
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Meguid SA, Kundalwal SI, Alian AR. Atomistic modeling of electromechanical properties of piezoelectric zinc oxide nanowires. Nanotechnology 2024; 35:135701. [PMID: 38134438 DOI: 10.1088/1361-6528/ad1841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 12/22/2023] [Indexed: 12/24/2023]
Abstract
Currently, numerous articles are devoted to examining the influence of geometry and charge distribution on the mechanical properties and structural stability of piezoelectric nanowires (NWs). The varied modeling techniques adopted in earlier molecular dynamics (MD) works dictated the outcome of the different efforts. In this article, comprehensive MD studies are conducted to determine the influence of varied interatomic potentials (partially charged rigid ion model, [PCRIM] ReaxFF, charged optimized many-body [COMB], and Buckingham), geometrical parameters (cross-section geometry, wire diameter, and length), and charge distribution (uniform full charges versus partially charged surface atoms) on the resulting mechanical properties and structural stability of zinc oxide (ZnO) NWs. Our optimized parameters for the Buckingham interatomic potential are in good agreement with the existing experimental results. Furthermore, we found that the incorrect selection of interatomic potentials could lead to excessive overestimate (61%) of the elastic modulus of the NW. While NW length was found to dictate the strain distribution along the wire, impacting its predicted properties, the cross-section shape did not play a major role. Assigning uniform charges for both the core and surface atoms of ZnO NWs leads to a drastic decrease in fracture properties.
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Affiliation(s)
- S A Meguid
- Mechanics and Aerospace Design Laboratory, University of Toronto, 5 King's College Rd. Toronto, Ontario M5S 3G8, Canada
| | - S I Kundalwal
- Applied and Theoretical Mechanics Lab, Department of Mechanical Engineering, Indian Institute of Technology Indore, Simrol, Indore 453552, India
| | - Ahmed R Alian
- Mechanics and Aerospace Design Laboratory, University of Toronto, 5 King's College Rd. Toronto, Ontario M5S 3G8, Canada
- Mechanical Design and Production Engineering Department, Faculty of Engineering, Cairo University, Giza 12613, Egypt
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Yu J, Dai X, Li J, Luo A, Ouyang Y, Zhou Y. Comparison and Assessment of Different Interatomic Potentials for Simulation of Silicon Carbide. Materials (Basel) 2023; 17:150. [PMID: 38204006 PMCID: PMC10779864 DOI: 10.3390/ma17010150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 12/22/2023] [Accepted: 12/24/2023] [Indexed: 01/12/2024]
Abstract
Interatomic potentials play a crucial role in the molecular dynamics (MD) simulation of silicon carbide (SiC). However, the ability of interatomic potentials to accurately describe certain physical properties of SiC has yet to be confirmed, particularly for hexagonal SiC. In this study, the mechanical, thermal, and defect properties of four SiC structures (3C-, 2H-, 4H-, and 6H-SiC) have been calculated with multiple interatomic potentials using the MD method, and then compared with the results obtained from density functional theory and experiments to assess the descriptive capabilities of these interatomic potentials. The results indicate that the T05 potential is suitable for describing the elastic constant and modulus of SiC. Thermal calculations show that the Vashishta, environment-dependent interatomic potential (EDIP), and modified embedded atom method (MEAM) potentials effectively describe the vibrational properties of SiC, and the T90 potential provides a better description of the thermal conductivity of SiC. The EDIP potential has a significant advantage in describing point defect formation energy in hexagonal SiC, and the GW potential is suitable for describing vacancy migration in hexagonal SiC. Furthermore, the T90 and T94 potentials can effectively predict the surface energies of the three low-index surfaces of 3C-SiC, and the Vashishta potential exhibits excellent capabilities in describing stacking fault properties in SiC. This work will be helpful for selecting a potential for SiC simulations.
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Affiliation(s)
| | | | | | | | | | - Yulu Zhou
- Center on Nanoenergy Research, Guangxi Colleges and Universities Key Laboratory of Blue Energy and Systems Integration, Carbon Peak and Neutrality Science and Technology Development Institute, School of Physical Science & Technology, Guangxi University, Nanning 530004, China
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Maździarz M. Transferability of interatomic potentials for silicene. Beilstein J Nanotechnol 2023; 14:574-585. [PMID: 37200833 PMCID: PMC10186261 DOI: 10.3762/bjnano.14.48] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 04/25/2023] [Indexed: 05/20/2023]
Abstract
The ability of various interatomic potentials to reproduce the properties of silicene, that is, 2D single-layer silicon, polymorphs was examined. Structural and mechanical properties of flat, low-buckled, trigonal dumbbell, honeycomb dumbbell, and large honeycomb dumbbell silicene phases, were obtained using density functional theory and molecular statics calculations with Tersoff, MEAM, Stillinger-Weber, EDIP, ReaxFF, COMB, and machine-learning-based interatomic potentials. A quantitative systematic comparison and a discussion of the results obtained are reported.
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Affiliation(s)
- Marcin Maździarz
- Department of Computational Science, Institute of Fundamental Technological Research Polish Academy of Sciences, Pawińskiego 5B, 02-106 Warsaw, Poland
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Waters MJ, Rondinelli JM. Benchmarking structural evolution methods for training of machine learned interatomic potentials. J Phys Condens Matter 2022; 34:385901. [PMID: 35797983 DOI: 10.1088/1361-648x/ac7f73] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Accepted: 07/07/2022] [Indexed: 06/15/2023]
Abstract
When creating training data for machine-learned interatomic potentials (MLIPs), it is common to create initial structures and evolve them using molecular dynamics (MD) to sample a larger configuration space. We benchmark two other modalities of evolving structures, contour exploration (CE) and dimer-method (DM) searches against MD for their ability to produce diverse and robust density functional theory training data sets for MLIPs. We also discuss the generation of initial structures which are either from known structures or from random structures in detail to further formalize the structure-sourcing processes in the future. The polymorph-rich zirconium-oxygen composition space is used as a rigorous benchmark system for comparing the performance of MLIPs trained on structures generated from these structural evolution methods. Using Behler-Parrinello neural networks as our MLIP models, we find that CE and the DM searches are generally superior to MD in terms of spatial descriptor diversity and statistical accuracy.
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Affiliation(s)
- Michael J Waters
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208, United States of America
| | - James M Rondinelli
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208, United States of America
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Sousa A, Lima H. Atomistic Simulation of Structural and Mechanical Properties of the AMgF 3 (A = K, Rb, and Cs) Compounds Under Hydrostatic Pressure. J Comput Chem 2020; 41:646-652. [PMID: 31828818 DOI: 10.1002/jcc.26117] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Revised: 10/02/2019] [Accepted: 11/03/2019] [Indexed: 11/07/2022]
Abstract
Structural, mechanical, elastic, and dielectric properties of the AMgF3 (A = K, Rb, and Cs) compounds were investigated using classical atomistic simulation. A new set of interatomic potentials was developed for these compounds. Lattice parameters and interatomic distances have shown to accurately reproduce all structures, with very close agreement to the experimental data. In all cases, the relative error is below 0.5%. Effect of hydrostatic pressure in the structural, mechanical, elastic, and dielectric properties of these materials were studied from 0 up to 50 GPa. Compounds behavior and stability under pressure were analyzed. KMgF3 and RbMgF3 changed from brittle to ductile at approximately 2 GPa. These calculations play an important role in understanding the properties of the AMgF3 (A = K, Rb, and Cs) compounds under pressure, and open up a new opportunity to study defects in this class of materials. © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Afranio Sousa
- Departamento de Física, Universidade Federal de Sergipe, 49100-000, São Cristóvão, SE, Brazil
| | - Heveson Lima
- Centro Multidisciplinar do Campus de Luís Eduardo Magalhães, Universidade Federal do Oeste da Bahia, 47850-000, Luís Eduardo Magalhães, BA, Brazil
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Kim JS, Jung WD, Son JW, Lee JH, Kim BK, Chung KY, Jung HG, Kim H. Atomistic Assessments of Lithium-Ion Conduction Behavior in Glass-Ceramic Lithium Thiophosphates. ACS Appl Mater Interfaces 2019; 11:13-18. [PMID: 30582676 DOI: 10.1021/acsami.8b17524] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
We determined the interatomic potentials of the Li-[PS43-] building block in (Li2S)0.75(P2S5)0.25 (LPS) and predicted the Li-ion conductivity (σLi) of glass-ceramic LPS from molecular dynamics. The Li-ion conduction characteristics in the crystalline/interfacial/glassy structure were decomposed by considering the structural ordering differences. The superior σLi of the glassy LPS could be attributed to the fact that ∼40% of its structure consists of the short-ranged cubic S-sublattice instead of the hexagonally close-packed γ-phase. This glassy LPS has a σLi of 4.08 × 10-1 mS cm-1, an improvement of ∼100 times relative to that of the γ-phase, which is in agreement with the experiments.
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Affiliation(s)
- Ji-Su Kim
- High-Temperature Energy Materials Research Center , Korea Institute of Science and Technology , 5 Hwarang-ro 14-gil , Seongbuk-gu, Seoul 02792 , Republic of Korea
| | - Wo Dum Jung
- High-Temperature Energy Materials Research Center , Korea Institute of Science and Technology , 5 Hwarang-ro 14-gil , Seongbuk-gu, Seoul 02792 , Republic of Korea
| | - Ji-Won Son
- High-Temperature Energy Materials Research Center , Korea Institute of Science and Technology , 5 Hwarang-ro 14-gil , Seongbuk-gu, Seoul 02792 , Republic of Korea
| | - Jong-Ho Lee
- High-Temperature Energy Materials Research Center , Korea Institute of Science and Technology , 5 Hwarang-ro 14-gil , Seongbuk-gu, Seoul 02792 , Republic of Korea
| | - Byung-Kook Kim
- High-Temperature Energy Materials Research Center , Korea Institute of Science and Technology , 5 Hwarang-ro 14-gil , Seongbuk-gu, Seoul 02792 , Republic of Korea
| | - Kyung-Yoon Chung
- Center for Energy Storage Research , Korea Institute of Science and Technology , 5 Hwarang-ro 14-gil , Seongbuk-gu, Seoul 02792 , Republic of Korea
| | - Hun-Gi Jung
- Center for Energy Storage Research , Korea Institute of Science and Technology , 5 Hwarang-ro 14-gil , Seongbuk-gu, Seoul 02792 , Republic of Korea
| | - Hyoungchul Kim
- High-Temperature Energy Materials Research Center , Korea Institute of Science and Technology , 5 Hwarang-ro 14-gil , Seongbuk-gu, Seoul 02792 , Republic of Korea
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Abstract
When a nucleus undergoes beta decay via the electron capture reaction, it emits an electron neutrino. The neutrino emission gives a small recoil to the atom, which can be experimentally observed as a Doppler broadening on subsequently emitted gamma rays. Using the two-axis flat-crystal spectrometer GAMS4 and the electron capture reaction in (152)Eu, the motion of atoms having an excess kinetic energy of 3 eV in the solid state was studied. It is shown how the motion of the atom during the first hundreds of femtoseconds can be reconstructed. The relevance of this knowledge for a new neutrino helicity experiment is discussed.
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Affiliation(s)
- J Jolie
- Institut de Physique, Université de Fribourg, Pérolles, CH-1700 Fribourg, Switzerland
| | - N Stritt
- Institut de Physique, Université de Fribourg, Pérolles, CH-1700 Fribourg, Switzerland
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Jentschel M, Börner HG, Lehmann H, Doll C. The GRID Technique: Current Status and New Trends. J Res Natl Inst Stand Technol 2000; 105:25-32. [PMID: 27551584 PMCID: PMC4878346 DOI: 10.6028/jres.105.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 07/22/1999] [Indexed: 05/29/2023]
Abstract
In the GRID technique one measures Doppler-broadened line profiles of γ transitions using the high resolution crystal spectrometers GAMS, which are installed at the high flux reactor of the ILL Grenoble. One of the essential applications of this technique is the measurement of nuclear state lifetimes. In the present contribution the precision and the principal limits of the technique are discussed.
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Affiliation(s)
- M Jentschel
- Institute Laue-Langevin, F-38042 Grenoble, France
| | - H G Börner
- Institute Laue-Langevin, F-38042 Grenoble, France
| | - H Lehmann
- Institute Laue-Langevin, F-38042 Grenoble, France
| | - C Doll
- Technische Universität München, D-85748 Garching, Germany
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