Hong Y, Jiao L, Wu J. New primers, taxonomic database and cut-off value for processing
nxrB gene high-throughput sequencing data by MOTHUR.
J Microbiol Methods 2020;
173:105939. [PMID:
32360381 DOI:
10.1016/j.mimet.2020.105939]
[Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 04/28/2020] [Accepted: 04/28/2020] [Indexed: 11/24/2022]
Abstract
To analyse the diversity of Nitrospira with functional nxrB genes, we designed and optimized a new primer set, Nxr-f27/Nxr-r617, and constructed a database for taxonomic classification. We also propose a cut-off value for processing the high-throughput sequencing data with MOTHUR.
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