Broadening the ecology of fear: non-lethal effects arise from diverse responses to predation and parasitism

Research on the 'ecology of fear' posits that defensive prey responses to avoid predation can cause non-lethal effects across ecological scales. Parasites also elicit defensive responses in hosts with associated non-lethal effects, which raises the longstanding, yet unresolved question of how non-lethal effects of parasites compare with those of predators. We developed a framework for systematically answering this question for all types of predator-prey and host-parasite systems. Our framework reveals likely differences in non-lethal effects not only between predators and parasites, but also between different types of predators and parasites. Trait responses should be strongest towards predators, parasitoids and parasitic castrators, but more numerous and perhaps more frequent for parasites than for predators. In a case study of larval amphibians, whose trait responses to both predators and parasites have been relatively well studied, existing data indicate that individuals generally respond more strongly and proactively to short-term predation risks than to parasitism. Apart from studies using amphibians, there have been few direct comparisons of responses to predation and parasitism, and none have incorporated responses to micropredators, parasitoids or parasitic castrators, or examined their long-term consequences. Addressing these and other data gaps highlighted by our framework can advance the field towards understanding how non-lethal effects impact prey/host population dynamics and shape food webs that contain multiple predator and parasite species.

Run rabbit run: spotted-tailed quoll diet reveals invasive prey is top of the menu

Information about the ecological functional roles of native predators may help inform the conservation of wildlife and pest management. If predators show preferences for certain prey, such as invasive species, this could potentially be used as a conservation tool to help restore degraded (e.g. overgrazed) ecosystems via the reintroduction of native predators and suppression of exotic prey (e.g. introduced herbivores). The diet of spotted-tailed quolls was studied in a fenced reserve in south-eastern Australia where native mammals have been reintroduced, foxes and cats removed, but invasive European rabbits still persist. A total of 80 scats were collected over 12 months and analysis of macroscopic prey remains was conducted to determine diet. Rabbits were by far the most commonly consumed prey species by volume (~76%) and frequency (~60%), followed by brushtail possums (~11% for both volume and frequency), and other small and medium-sized native mammals in much smaller amounts. Quoll scat analysis revealed 10 mammal species in total, eight of which were native. Bird, reptile and invertebrate remains were uncommon in quoll scats. This suggests that spotted-tailed quolls may show a preference for preying on invasive European rabbits in certain contexts, and this could potentially be used as part of quoll reintroductions to aid rabbit population suppression and ecosystem restoration.

Moon phase and nocturnal activity of native Australian mammals

Moon phase and variation in ambient light conditions can influence predator and prey behaviour. Nocturnal predators locate prey visually, and prey may adjust their activity to minimise their predation risk. Understanding how native mammals in Australia respond to varying phases of the moon and cloud cover (light) enhances knowledge of factors affecting species’ survival and inference regarding ecological and population survey data. Over a two-year period within a fenced conservation reserve, in south-eastern Australia, with reintroduced native marsupial predator and prey species (eastern barred bandicoot, southern brown bandicoot, long-nosed potoroo, rufous bettong, Tasmanian pademelon, brush-tailed rock-wallaby, red-necked wallaby, eastern quoll, spotted-tailed quoll, and naturally occurring swamp wallaby, common brushtail possum, common ringtail possum), we conducted monthly spotlight surveys during different moon phases (full, half and new moon). We found an interaction between cloud cover and moon phase, and an interaction of the two depending on the mammal size and class. Increased activity of prey species corresponded with periods of increasing cloud cover. Predators and medium-sized herbivores were more active during times of low illumination. Our findings suggest that moon phase affects the nocturnal activity of mammal species and that, for prey species, there might be trade-offs between predation risk and foraging. Our findings have implications for: ecological survey design and interpretation of results for mammal populations across moon phases, understanding predator and prey behaviour and interactions in natural and modified (artificial lighting) ecosystems, and potential nocturnal niche partitioning of species.

Data management challenges in analysis and synthesis in the ecosystem sciences

Open-data has created an unprecedented opportunity with new challenges for ecosystem scientists. Skills in data management are essential to acquire, manage, publish, access and re-use data. These skills span many disciplines and require trans-disciplinary collaboration. Science synthesis centres support analysis and synthesis through collaborative 'Working Groups' where domain specialists work together to synthesise existing information to provide insight into critical problems. The Australian Centre for Ecological Analysis and Synthesis (ACEAS) served a wide range of stakeholders, from scientists to policy-makers to managers. This paper investigates the level of sophistication in data management in the ecosystem science community through the lens of the ACEAS experience, and identifies the important factors required to enable us to benefit from this new data-world and produce innovative science. ACEAS promoted the analysis and synthesis of data to solve transdisciplinary questions, and promoted the publication of the synthesised data. To do so, it provided support in many of the key skillsets required. Analysis and synthesis in multi-disciplinary and multi-organisational teams, and publishing data were new for most. Data were difficult to discover and access, and to make ready for analysis, largely due to lack of metadata. Data use and publication were hampered by concerns about data ownership and a desire for data citation. A web portal was created to visualise geospatial datasets to maximise data interpretation. By the end of the experience there was a significant increase in appreciation of the importance of a Data Management Plan. It is extremely doubtful that the work would have occurred or data delivered without the support of the Synthesis centre, as few of the participants had the necessary networks or skills. It is argued that participation in the Centre provided an important learning opportunity, and has resulted in improved knowledge and understanding of good data management practices.

Evolutionary origins and diversification of dragon lizards in Australia's tropical savannas

Australia's monsoonal tropics are dominated by the largest and least modified savanna woodlands in the world, and they are globally significant for their high biodiversity and regional endemism. Despite this, there have been very few molecular studies of the evolutionary origins and diversification of vertebrates in this region. The semi-arboreal dragon lizards of Lophognathus and Amphibolurus are widely distributed in the savanna and dry sclerophyll woodlands of Australasia, including the monsoon tropics. We sequenced a ~1400 bp region of mitochondrial DNA and a ~1400 bp nuclear gene (RAG1) to investigate the phylogenetic relationships and phylogeographic structuring of all seven species of Lophognathus and Amphibolurus. Our analyses show that there is a higher level of species and generic diversity in the monsoon tropics than previously thought, and a full morphological review and taxonomic revision of these genera is required. Relaxed molecular clock analyses indicate that species across both genera originated in the late Miocene and early Pliocene, with significant phylogeographic structure within species. We did not find any evidence that the monsoon tropics species were a monophyletic group that had diversified within the region; instead Amphibolurus and Lophognathus represent at least three independent evolutionary colonizations of the monsoon tropics. It is probable that the origins and phylogeographic patterns of the northern Lophognathus species have evolved under the climatic influence of the Australian monsoon, rather than being either an ancient Gondwanan lineage that pre-dates the monsoon or the result of a more recent dispersal event across Wallace's Line.

An extension to the known range of the eastern grey kangaroo Macropus giganteus on Cape York Peninsula

THE eastern grey kangaroo (Macropus giganteus) is one of Australia?s widest-ranging large macropodids, occurring in open forests, woodlands, subalpine woodland, farmland, and semi-arid regions throughout most of eastern Australia (Menkhorst and Knight 2001). However current general accounts (e.g., Poole 1995, Menkhorst and Knight 2001) regard M. giganteus as being absent from the northern Cape York Peninsula.

Adjustment of offspring sex ratios in relation to the availability of resources for philopatric offspring in the common brushtail possum

The local-resource-competition hypothesis predicts that where philopatric offspring compete for resources with their mothers, offspring sex ratios will be biased in favour of the dispersing sex. This should produce variation in sex ratios between populations in relation to differences in the availability of resources for philopatric offspring. However, previous tests of local resource competition in mammals have used indirect measures of resource availability and have focused on sex-ratio variation between species or individuals rather than between local populations. Here, we show that the availability of den sites predicts the offspring sex ratio in populations of the common brushtail possum. Female possums defend access to dens, and daughters, but not sons, occupy dens within their mother's range. However, the abundances of possums in our study areas were determined principally by food availability. Consequently, in food-rich areas with a high population density, the per-capita availability of dens was low, and the cost of having a daughter should have been high. This cost was positively correlated with male bias in the sex ratio at birth. Low per capita availability of dens was correlated with male bias in the sex ratio at birth.

The effect of trematode infection on amphibian limb development and survivorship

The causes of amphibian deformities and their role in widespread amphibian declines remain conjectural. Severe limb abnormalities were induced at high frequencies in Pacific treefrogs (Hyla regilla) exposed to cercariae of a trematode parasite (Ribeiroia sp.). The abnormalities closely matched those observed at field sites, and an increase in parasite density caused an increase in abnormality frequency and a decline in tadpole survivorship. These findings call for further investigation of parasite infection as a cause of amphibian deformities in other sites and species.