Sea-ice melt determines seasonal phytoplankton dynamics and delimits the habitat of temperate Atlantic taxa as the Arctic Ocean atlantifies

The Arctic Ocean is one of the regions where anthropogenic environmental change is progressing most rapidly and drastically. The impact of rising temperatures and decreasing sea ice on Arctic marine microbial communities is yet not well understood. Microbes form the basis of food webs in the Arctic Ocean, providing energy for larger organisms. Previous studies have shown that Atlantic taxa associated with low light are robust to more polar conditions. We compared to which extent sea ice melt influences light-associated phytoplankton dynamics and biodiversity over two years at two mooring locations in the Fram Strait. One mooring is deployed in pure Atlantic water, and the second in the intermittently ice-covered Marginal Ice Zone. Time-series analysis of amplicon sequence variants abundance over a 2-year period, allowed us to identify communities of co-occurring taxa that exhibit similar patterns throughout the annual cycle. We then examined how alterations in environmental conditions affect the prevalence of species. During high abundance periods of diatoms, polar phytoplankton populations dominated, while temperate taxa were weakly represented. Furthermore, we found that polar pelagic and ice-associated taxa, such as Fragilariopsis cylindrus and Melosira arctica, were more common in Atlantic conditions, while temperate taxa, such as Odontella aurita and Proboscia alata, were less abundant under polar conditions. This suggests that sea ice melt may act as a barrier to the northward expansion of temperate phytoplankton, preventing their dominance in regions still strongly influenced by polar conditions. Our findings highlight the complex interactions between sea ice melt, phytoplankton dynamics, and biodiversity in the Arctic.

Atlantic water influx and sea-ice cover drive taxonomic and functional shifts in Arctic marine bacterial communities

The Arctic Ocean is experiencing unprecedented changes because of climate warming, necessitating detailed analyses on the ecology and dynamics of biological communities to understand current and future ecosystem shifts. Here, we generated a four-year, high-resolution amplicon dataset along with one annual cycle of PacBio HiFi read metagenomes from the East Greenland Current (EGC), and combined this with datasets spanning different spatiotemporal scales (Tara Arctic and MOSAiC) to assess the impact of Atlantic water influx and sea-ice cover on bacterial communities in the Arctic Ocean. Densely ice-covered polar waters harboured a temporally stable, resident microbiome. Atlantic water influx and reduced sea-ice cover resulted in the dominance of seasonally fluctuating populations, resembling a process of "replacement" through advection, mixing and environmental sorting. We identified bacterial signature populations of distinct environmental regimes, including polar night and high-ice cover, and assessed their ecological roles. Dynamics of signature populations were consistent across the wider Arctic; e.g. those associated with dense ice cover and winter in the EGC were abundant in the central Arctic Ocean in winter. Population- and community-level analyses revealed metabolic distinctions between bacteria affiliated with Arctic and Atlantic conditions; the former with increased potential to use bacterial- and terrestrial-derived substrates or inorganic compounds. Our evidence on bacterial dynamics over spatiotemporal scales provides novel insights into Arctic ecology and indicates a progressing Biological Atlantification of the warming Arctic Ocean, with consequences for food webs and biogeochemical cycles.

Mapping the long rocky road to effective spinal cord injury therapy - A meta-review of pre-clinical and clinical research

Spinal cord injury (SCI) is a rare condition, which even after decades of research, to date still presents an incurable condition with a complex symptomatology. SCI can result in paralysis, pain, loss of sensation, bladder and sexual dysfunction, and muscle degeneration to name but a few. The large number of publications makes it difficult to keep track of current progress in the field and of the many treatment options, which have been suggested and are being proposed with increasing frequency. Scientific databases with user-oriented search options will offer possible solutions, but they are still mostly in the development phase. In this meta-analysis, we summarize and narrow down SCI therapeutic approaches applied in pre-clinical and clinical research. Statistical analyses of treatment clusters - assorted after counting annual publication numbers in PubMed and ClinicalTrials.gov databases - were performed to allow the comparison of research foci and of their translation efficacy into clinical therapy. Using the example of SCI research, our findings demonstrate the challenges that come with the accelerating research progress - an issue, which many research fields are faced with today. The analyses point out similarities and differences in the prioritization of SCI research in pre-clinical versus clinical therapy strategies. Moreover, the results demonstrate the rapidly growing importance of modern (bio-)engineering technologies.

From sequence to information

Today massive amounts of sequenced metagenomic and metatranscriptomic data from different ecological niches and environmental locations are available. Scientific progress depends critically on methods that allow extracting useful information from the various types of sequence data. Here, we will first discuss types of information contained in the various flavours of biological sequence data, and how this information can be interpreted to increase our scientific knowledge and understanding. We argue that a mechanistic understanding of biological systems analysed from different perspectives is required to consistently interpret experimental observations, and that this understanding is greatly facilitated by the generation and analysis of dynamic mathematical models. We conclude that, in order to construct mathematical models and to test mechanistic hypotheses, time-series data are of critical importance. We review diverse techniques to analyse time-series data and discuss various approaches by which time-series of biological sequence data have been successfully used to derive and test mechanistic hypotheses. Analysing the bottlenecks of current strategies in the extraction of knowledge and understanding from data, we conclude that combined experimental and theoretical efforts should be implemented as early as possible during the planning phase of individual experiments and scientific research projects.

This article is part of the theme issue ‘Integrative research perspectives on marine conservation’.

Strategies to reduce DON contamination of wheat with different soil tillage and variety systems

With the focus on minimizingFusarium head blight and the deoxynivalenol (DON) contamination of wheat a three year crop rotation system starting with forage maize and followed by two years of winter wheat was combined with three soil tillage systems and selected plant varieties with varying susceptibility toFusarium infection.Higher DON concentrations were generally observed in wheat grain when the soil was mulched rather than ploughed, depending on the mass of maize residues remaining on the soil surface. Maize residues are the most important source ofFusarium inoculum. Infected maize residues had a main impact on the level of DON contamination in wheat grain particularly in the first year after maize cultivation. When the maize stubble was chopped before mulching, the decomposition of the residues was speeded up and the DON contamination of the wheat grain was lower. In the second year following the maize crop, the decomposition of the maize residues/Fusarium biomass was nearly complete and the infection risk was reduced considerably. An influence of the susceptibility of the maize variety against stem rot on the DON concentration of the succeeding winter wheat crop was not observed. The less susceptible wheat variety was suitable for controlling the higher infection risk deriving from the introduction of maize in wheat rotation and the use of mulching techniques.

Fusarium mycotoxins in forage maize - occurrence, risk assessment, minimization

The deoxynivalenol contents of forage maize in this study ranged between 0.22 and 12.9 mg/kg DM, but seldom exceeded critical concentrations suggested for ruminant diets. Zearalenone was found in considerably lower concentrations than DON and rarely reached critical levels. Therefore risk to the health and performance of ruminants is regarded as low. Fusarium toxin occurrence in forage maize can be minimized by choosing maize varieties less susceptible to stem rot, harvesting at optimal maturity (dry matter content 30-35%) and elevating the cutting height to at least 40 cm above ground.

Distribution of deoxynivalenol inFusarium-infected forage maize

A time course study was carried out to assess the appearance and distribution of DON in different organs of forage maize cultivated in the field. DON was produced after the flowering period and increased until harvest to high amounts in the rudimentary ears and leaf sheaths/leaf blades deriving from nodes located below the ear node, whereas nodes and internodes were either not or only slightly contaminated with DON. Genrally, DON was not detected in the ears, including husks, during the whole cultivation time.Fusarium biomass determined in the infected organs confirmed these findings. It seems that the contribution of DON containing rudimentary ears, leaf sheaths and leaf blades to the total DON contamination of forage maize is so far widely underestimated. Therefore advanced evaluation procedures are recommended to get a better understanding of the infection and contamination process and to prove genotypic differences in the resistance of forage maize genotypes againstFusarium infection.

Effects of strobilurin containing fungicides on the deoxynivalenol content in winter wheat

The effects of the strobilurin fungicides Juwel, Juwel Top and Amistar on the deoxynivalenol contamination of winter wheat was studied in field experiments. In general, the application of strobilurins during stem elongation and inflorescence emergence of wheat resulted in increased deoxynivalenol contents in kernels as compared with the untreated control. This stimulating effect can be reversed by a following azole fungicide applied within a time period of one week during the stages of flowering.