Degradation of methylmercury into Hg(0) by the oxidation of iron(II) minerals

Mercury contamination is a global concern, and the degradation and detoxification of methylmercury have gained significant attention due to its neurotoxicity and biomagnification within the food chain. However, the currently known pathways of abiotic demethylation are limited to light-induced photodegradation process and little is known about light-independent abiotic demethylation of methylmercury. In this study, we reported a novel abiotic pathway for the degradation of methylmercury through the oxidation of both mineral structural iron(II) and surface-adsorbed iron(II) in the absence of light. Our findings reveal that methylmercury can be oxidatively degraded by reactive oxygen species, specifically hydroxyl and superoxide radicals, which are generated from the oxidation of iron(II) minerals under dark conditions. Surprisingly, Hg(0) trapping experiments demonstrated that inorganic Hg(II) resulting from the oxidative degradation of methylmercury was rapidly reduced to gaseous Hg(0) by iron(II) minerals. The demethylation of methylmercury, coupled with the generation of Hg(0), suggests a potential natural attenuation process for methylmercury. Our results highlight the underappreciated roles of iron(II) minerals in the abiotic degradation of methylmercury and the release of gaseous Hg(0) into the atmosphere.

Thermodynamic considerations on the combined effect of electron shuttles and iron(III)-bearing clay mineral on Cr(VI) reduction by Shewanella oneidensis MR-1

Electron shuttles (ESs) and Fe-bearing clay minerals are commonly found in subsurface environments and have shown potential in enhancing the bioreduction of Cr(VI). However, the synergistic effect of ESs at different redox potentials and Fe-bearing clay minerals on Cr(VI) bioreduction, as well as the fundamental principles governing this process, remain unclear. In our study, we investigated the role of ESs and Fe(III) in Cr(VI) bioreduction. We found that the acceleration of ESs and Fe(III) are crucial factors in this process. Interestingly, the promotion of ESs on Cr(VI) and Fe(III) showed opposite trends. Electrochemical methods confirmed the limited steps are the extent of reduced ESs and the redox potential difference between ESs and Fe(III), separately. Furthermore, we investigated the combined effect of ESs and NAu-2 on Cr(VI) bioreduction. Our results revealed two segments: in the first segment, the ES (5-HNQ) and NAu-2 did not synergistically enhance Cr(VI) reduction. However, in the second segment, ESs and NAu-2 demonstrated a synergistic effect, significantly increasing Cr(VI) reduction by MR-1. These bioreduction processes all follow linear free energy relationships (LFERs). Overall, our study highlights the fundamental principles governing multivariate systems and presents a promising approach for the remediation of Cr(VI)-contaminated sites.

Capacity, stability and energy requirement of divalent mercury uptake by non-methylating/non-demethylating bacteria

Methylmercury (MeHg) uptake by demethylating bacteria and inorganic divalent mercury [Hg(II)] uptake by methylating bacteria have been extensively investigated because uptake is the initial step of the intracellular Hg transformation. However, MeHg and Hg(II) uptake by non-methylating/non-demethylating bacteria is overlooked, which may play an important role in the biogeochemical cycling of mercury concerning their ubiquitous presence in the environment. Here we report that Shewanella oneidensis MR-1, a model strain of non-methylating/non-demethylating bacteria, can take up and immobilize MeHg and Hg(II) rapidly without intracellular transformation. In addition, when taken up into MR-1 cells, the intracellular MeHg and Hg(II) were proved to be hardly exported over time. In contrast, adsorbed mercury on cell surface was observed to be easily desorbed or remobilized. Moreover, inactivated MR-1 cells (starved and CCCP-treated) were still capable of taking up nonnegligible amounts of MeHg and Hg(II) over an extended period in the absence and presence of cysteine, suggesting that active metabolism may be not required for both MeHg and Hg(II) uptake. Our results provide an improved understanding of divalent mercury uptake by non-methylating/non-demethylating bacteria and highlight the possible broader involvement of these bacteria in mercury cycling in natural environments.

Electrocatalytic Removal of Low-Concentration Uranium Using TiO2 Nanotube Arrays/Ti Mesh Electrodes

Groundwater containing naturally occurring uranium is a conventional drinking water source in many countries. Removal of low concentrations of uranium complexes in groundwater is a challenging task. Here, we demonstrated that the TiO₂ nanotube arrays/Ti (TNTAs/Ti) mesh electrode could break through the concentration limit and efficiently remove low concentrations of uranium complexes from both simulated and real groundwater. U(VI) complexes in groundwater were electro-reduced to UO₂ and deposited on the TNTAs/Ti mesh electrode surface. The adsorption rate and electron transfer rate of the anatase TNTAs/Ti mesh electrode were twice that of the rutile TNTAs/Ti mesh electrode. Therefore, the anatase TNTAs/Ti mesh electrode exhibited excellent electrocatalytic activity toward the electrochemical removal of U(VI), which could work at a higher potential and significantly reduce the energy consumption of U(VI) removal. The U(VI) adsorption capacity on the anatase TNTAs/Ti mesh electrode was limited due to the low U(VI) concentration. However, the anatase TNTAs/Ti mesh electrode displayed a huge U(VI) removal capacity using the electroreduction method, where adsorption and reduction of U(VI) were mutually promoted and induced continuous accumulation of UO₂ on the electrode. The accumulated UO₂ can be easily recovered in dilute HNO₃, and the electrode can be used repeatedly.

Spatial distribution, pollution assessment, and source identification of heavy metals in the Yellow River

The discharge of pollutants into the Yellow River has been strictly controlled since 2013 due to the severe pollution. Thus, the overall water quality of the Yellow River has been becoming better year by year. However, the contamination status and source identification of heavy metals from the entire Yellow River remains unclear. Our results demonstrated that heavy metal contents in sediments showed little changes over time, whereas significant alleviation was observed in surface water compared to the reported metal concentrations before 2013. No heavy metal contamination was observed in surface water, and the distribution of all heavy metals in surface water fluctuated along the mainstream without a significant spatial difference. Heavy metals in sediments were assessed as low to moderate contamination degree. The majority of heavy metal concentrations were higher in the upstream and midstream than that in the downstream. Besides anthropogenic activities, the natural contribution from soil erosion of the Loess Plateau was also an important source of heavy metals in the Yellow River sediments. Our results highlight that control of anthropogenic activities and soil erosion of the Loess Plateau are necessary measures to reduce heavy metals in the Yellow River.

Oxidation of bioreduced iron-bearing clay mineral triggers arsenic immobilization

Iron-bearing clay minerals and arsenic commonly coexist in soils and sediments. Redox oscillation from anoxic to oxic conditions can result in structural Fe(II) oxidation in clay minerals. However, the role of structural Fe(II) oxidation in clay minerals on arsenic immobilization is still unclear. In this study, we found that oxidation of structural Fe(II) in bioreduced clay mineral nontronite (NAu-2) triggered As(III) adsorption onto NAu-2. As(III) was adsorbed onto NAu-2 through ligand exchange with hydroxyl groups which were generated by the oxidation of structural Fe(II) in NAu-2. In addition, oxidation of structural Fe(II) led to the oxidation of As(III) to As(V), which further enhanced the adsorption of dissolved As(III) on NAu-2. Therefore, the adsorption capacity of As(III) onto oxidized NAu-2 was 1.6 times higher than that of native NAu-2. Oxidation of structural Fe(II) was a two-stage process that proceeded from exterior sites to interior sites, and the immobilization and oxidation of As(III) occurred predominantly at the rapid exterior structural Fe(II) oxidation stage. Our findings highlight that the oxidation of structural Fe(II) in iron-bearing clay minerals may play an important role in arsenic immobilization and transformation in the subsurface environment.

Sustainable enhancement of Cr(VI) bioreduction by the isolated Cr(VI)-resistant bacteria

Bioreduction of mobile Cr(VI) to sparingly soluble Cr(III) is an effective strategy for in situ remediations of Cr contaminated sites. The key of this technology is to screen Cr(VI)-resistant bacteria and further explore the sustainable enhancement approaches towards their Cr(VI) reduction performance. In this study, a total of ten Cr(VI)-resistant bacteria were isolated from a Cr(VI) contaminated site. All of them could reduce Cr(VI), and the greatest extent of Cr(VI) reduction (98%) was obtained by the isolated CRB6 strain. The isolated CRB6 was able to reduce structural Fe(III) in Nontronite NAu-2 to structural Fe(II). Compared with the slow bioreduction process, the produced structural Fe(II) can rapidly enhance Cr(VI) reduction. The resist dissolution characteristics of NAu-2 in the redox cycling may provide sustainable enhancement of Cr(VI) reduction. However, no enhancement on Cr(VI) bioreduction by the isolated CRB6 was observed in the presence of NAu-2, which was attributed to the inhibition of Cr(VI) on the electron transfer between the isolated CRB6 and NAu-2. AQDS can accelerate the electron transfer between the isolated CRB6 and NAu-2 as an electron shuttle in the presence of Cr(VI). Therefore, the combination of NAu-2 and AQDS generated a synergistic enhancement on Cr(VI) bioreduction compared with the enhancement obtained by NAu-2 and AQDS individually. Our results highlight that structural Fe(III) and electron shuttle can provide a sustainable enhancement of Cr(VI) reduction by Cr(VI)-reducing bacteria, which has great potential for the effective Cr(VI) in-situ remediation.

Anaerobic oxidation of arsenite by bioreduced nontronite

The redox state of arsenic controls its toxicity and mobility in the subsurface environment. Understanding the redox reactions of arsenic is particularly important for addressing its environmental behavior. Clay minerals are commonly found in soils and sediments, which are an important host for arsenic. However, limited information is known about the redox reactions between arsenic and structural Fe in clay minerals. In this study, the redox reactions between As(III)/As(V) and structural Fe in nontronite NAu-2 were investigated in anaerobic batch experiments. No oxidation of As(III) was observed by the native Fe(III)-NAu-2. Interestingly, anaerobic oxidation of As(III) to As(V) occurred after Fe(III)-NAu-2 was bioreduced. Furthermore, anaerobic oxidization of As(III) by bioreduced NAu-2 was significantly promoted by increasing Fe(III)-NAu-2 reduction extent and initial As(III) concentrations. Bioreduction of Fe(III)-NAu-2 generated reactive Fe(III)-O-Fe(II) moieties at clay mineral edge sites. Anaerobic oxidation of As(III) was attributed to the strong oxidation activity of the structural Fe(III) within the Fe(III)-O-Fe(II) moieties. Our results provide a potential explanation for the presence of As(V) in the anaerobic subsurface environment. Our findings also highlight that clay minerals can play an important role in controlling the redox state of arsenic in the natural environment.

Microbial mobilization of arsenic from iron-bearing clay mineral through iron, arsenate, and simultaneous iron-arsenate reduction pathways

Clay minerals are an important host for arsenic in many arsenic-affected areas. The role of bioreduction of structural Fe(III) in clay minerals in the mobilization of arsenic from clay minerals, however, still remains unclear. In this study, Fe(III) reducing bacterium, As(V) reducing bacterium, and Fe(III)-As(V) reducing bacterium were employed to investigate the possible bioreduction pathways for arsenic release from Nontronite NAu-2. Results demonstrated that microbial reduction controlled arsenic mobilization from NAu-2 through Fe(III), As(V), and simultaneous Fe(III)-As(V) reduction pathways. Although the bioreduction of structural Fe(III) led to a negligible dissolution of NAu-2, it triggered a significant release of arsenic from NAu-2. The bioreduction of tetrahedral Fe(III) initiated the release of As(V), and the further bioreduction of octahedral Fe(III) induced the release of As(III) in NAu-2. In addition, bioreduction of As(V) resulted in the desorption and transformation of As(V) from NAu-2. Simultaneous bioreduction of Fe(III) and As(V) led to an almost complete release of As(V) from NAu-2. These findings suggest that simultaneous Fe(III)-As(V) reduction was the dominant pathway governing As(V) release from NAu-2, while structural Fe(III) reduction controlled As(III) release from NAu-2. Therefore, the bioreduction of iron-bearing clay minerals has a great potential for arsenic mobilization in the subsurface environment.

Removal and Recovery of Uranium from Groundwater Using Direct Electrochemical Reduction Method: Performance and Implications

Removal of uranium from groundwater is of great significance as compared to in situ bioimmobilization technology. In this study, a novel direct electro-reductive method has been developed to efficiently remove and recover uranium from carbonate-containing groundwater, where U(VI)O₂(CO₃)₃^4- and Ca₂U(VI)O₂(CO₃)₃ are the dominant U species. The transferred electron calculations and XPS, XRD analyses confirmed that U(VI) was reduced to U(IV)O₂ and accumulated on the surface of the Ti electrode (defined as Ti@U(IV)O₂ electrode) with high current efficiencies (over 90.0%). Moreover, over 98.0% of the accumulated U(IV)O₂ could be recovered by soaking the Ti@U(IV)O₂ electrode in the dilute nitric acid. Results demonstrated that the accumulated U(IV)O₂ on the surface of the Ti electrode played a key role in the removal of U(VI), which can promote the electro-reduction of U(VI). Therefore, the electrode could be used repeatedly and has a high removal capacity of U(VI) due to the continuous accumulation of active U(IV)O₂ on the surface of the electrode. Significantly, the uranium in both real and high salinity groundwater can be efficiently removed. This study implies that the proposed direct electro-reductive method has great potential for the removal and recovery of uranium from groundwater and uranium-containing wastewater.

Serum Homocysteine Levels Had Important Associations with Activity and Quality of Daily Living in Chinese Centenarians

BACKGROUND

Population aging is an important problem worldwide, with activity and quality of daily living commonly reduced in elderly people. leading to increased hospitalization and mortality rates, and substantial individual and social burdens.

OBJECTIVE

This study was designed to investigate the associations of serum homocysteine levels with activity and quality of daily living in Chinese centenarians for the first time.

PARTICIPANTS

The China Hainan Centenarian Cohort Study was performed in 18 cities and counties of Hainan Province.

MAIN MEASURES

Home interview, physical examination and blood analysis were performed in 787 centenarians following standard procedures.

KEY RESULTS

The median age was 102 years, ranging between 100 and 115 years. There were 634 females (80.6%) and 153 males (19.4%) in all. The median level of serum homocysteine was 23.80 (18.80-29.90) umol/L, whereas median values of Barthel Index and EuroQol 5 Dimensions were 85(60-95) and 0.661(0.558-0.766), respectively. The centenarians with serum homocysteine levels ≥23.8μmol/L were more likely to had lower values of Barthel Index and EuroQol 5 Dimensions than those with serum homocysteine levels <23.8μmol/L (P<0.05 for all). In multivariate linear regression analyses, serum homocysteine levels were significantly associated with Barthel Index and EuroQol 5 Dimensions (P<0.05 for all).

CONCLUSIONS

Serum homocysteine levels had important associations with activity and quality of daily living in Chinese centenarians. Future research should focus on the value of intervening in serum homocysteine levels by supplying folic acid (vitamin B9) and vitamin B12 on improving activity and quality of daily living in elderly people.

Sex, Residence and Fish Intake Predict Vitamin D Status in Chinese Centenarians

OBJECTIVES

This study aims to investigate the prevalence of vitamin D deficiency in Chinese centenarians and to identify the factors associated with vitamin D deficiency.

DESIGN

Cross-sectional population-based study.

SETTING

Hainan province in the south of China.

PARTICIPANTS

943 subjects aged 100 years old and older.

METHODS

Details on sociodemographics and lifestyle characteristics were collected using a structured questionnaire. Anthropometrics and blood samples were obtained. Vitamin D deficiency was defined as serum 25-hydroxyvitamin D concentration < 20ng/mL (50nmol/L).

RESULTS

The overall prevalence of vitamin D deficiency among these 943 centenarians was 39.9% (376 subjects) and the mean serum vitamin D concentrations were 22.7±9.5 (ng/mL). Female centenarians had higher prevalence of vitamin D deficiency than male (44.0% vs. 21.7%, P <0.001). Multivariate logistic regression analyses showed that being female, urban residency, lower body mass index, higher serum parathyroid hormone levels, no fish consumption, and less sun exposure time were all significant and independent determinants of vitamin D deficiency. No significant associations of vitamin D deficiency with ethnic, education, geographic location, tea drinking, alcohol use, or smoking were found in this study.

CONCLUSION

Vitamin D deficiency was common in Chinese centenarians, especially in women. Given that vitamin D deficiency is linked to numerous adverse health outcomes, dietary, outdoor activities and other intervention measures are needed to correct vitamin D deficiency in this population.

Relationships of Sex Hormone Levels with Activity of Daily Living in Chinese Female Centenarians

BACKGROUND

Activity of daily living declines in female elderly, which not only increases hospitalization and mortality rates, but also aggravates individual and societal burden. Large samples are needed to elucidate the relationships of plasma sex hormone levels with activity of daily living in Chinese female centenarians to better understand the effects of hormone-replacing therapy.

OBJECTIVE

As the first time in the world, the current study was designed to investigate the relationships of plasma sex hormone levels with activity of daily living in Chinese female centenarians.

PARTICIPANTS

China Hainan Centenarian Cohort Study was carried out in 18 cities and counties of Hainan Province.

MAIN MEASURES

Home interview, physical examination and blood analysis were carried out in 583 female centenarians following standard procedures. Barthel Index was used to assess the activity of daily living.

KEY RESULTS

Median age of all female centenarians was 102 years, with the range from 100 to 115 years. Median values of Barthel Index were 85(60-90). In multivariate linear regression analyses, Barthel Index values were inversely associated with plasma luteinizing hormone (LH), follicle-simulating hormone (FSH), testosterone, progesterone and estradiol levels (P<0.05 for all).

CONCLUSION

Plasma sex hormone levels, including LH, FSH, testosterone, progesterone and estradiol, had significant relationships with activity of daily living in Chinese female centenarians.

Iron(III) minerals and anthraquinone-2,6-disulfonate (AQDS) synergistically enhance bioreduction of hexavalent chromium by Shewanella oneidensis MR-1

Bioreduction of hexavalent chromium (Cr(VI)) to sparingly soluble trivalent chromium (Cr(III)) is a strategy for the remediation of Cr(VI) contaminated sites. However, its application is limited due to the slow bioreduction process. Here we explored the potential synergistic enhancement of iron(III) minerals (nontronite NAu-2, ferrihydrite, and goethite) and electron shuttle anthraquinone-2,6-disulfonate (AQDS) on the bioreduction of Cr(VI) by Shewanella oneidensis MR-1. AQDS alone increased the bioreduction rate of Cr(VI) by accelerating electron transfer from MR-1 to Cr(VI). Iron minerals alone did not increase the bioreduction rate of Cr(VI), where the electron transfer from MR-1 to Fe(III) minerals was inhibited due to the toxicity of Cr(VI) to MR-1. AQDS plus NAu-2 or ferrihydrite significantly enhanced the bioreduction rate of Cr(VI) as compared to AQDS or NAu-2/ferrihydrite alone, demonstrating that AQDS plus NAu-2/ferrihydrite had the synergistic effect on bioreduction of Cr(VI). Synergy factor (k_{cells+Fe+AQDS}/(k_cells+Fe + k_cells+AQDS)) was used to quantify the synergistic effect of AQDS and iron minerals on the bioreduction of Cr(VI). The synergy factors of AQDS plus NAu-2 were 2.09-4.63 (three Cr(VI) spikes), and the synergy factors of AQDS plus ferrihydrite were 1.89-4.61 (two Cr(VI) spikes). In the presence of Cr(VI), AQDS served as the electron shuttle between MR-1 and iron minerals, facilitating the reduction of Fe(III) minerals to Fe(II). The synergistic enhancement of AQDS and NAu-2/ferrihydrite was attributed to the generated Fe(II), which could quickly reduce Cr(VI) to Cr(III). Our results provide an attractive strategy to strengthen the bio-immobilization of Cr(VI) at iron-rich contaminated sites through the synergistic enhancement of iron(III) minerals and electron shuttle.

Enhancing anaerobic digestion performance of crude lipid in food waste by enzymatic pretreatment

Three lipases were applied to hydrolyze the floatable grease (FG) in the food waste for eliminating FG inhibition and enhancing digestion performance in anaerobic process. Lipase-I, Lipase-II, and Lipase-III obtained from different sources were used. Animal fat (AF) and vegetable oil (VO) are major crude lipids in Chinese food waste, therefore, applied as substrates for anaerobic digestion tests. The results showed that Lipase-I and Lipase-II were capable of obviously releasing long chain fatty acid in AF, VO, and FG when hydrolyzed in the conditions of 24h, 1000-1500μL and 40-50°C. Compared to the untreated controls, the biomethane production rate were increased by 80.8-157.7%, 26.9-53.8%, and 37.0-40.7% for AF, VO, and FG, respectively, and the digestion time was shortened by 10-40d. The finding suggests that pretreating lipids with appropriate lipase could be one of effective methods for enhancing anaerobic digestion of food waste rich in crude lipid.

Overexpression of the CmACS-3 gene in melon causes abnormal pollen development

Sexual diversity expressed by the Curcurbitaceae family is a primary example of developmental plasticity in plants. Most melon genotypes are andromonoecious, where an initial phase of male flowers is followed by a mixture of bisexual and male flowers. Over-expression of the CmACS-3 gene in melon plants showed an increased number of flower buds, and increased femaleness as demonstrated by a larger number bisexual buds. Transformation of CmACS-3 in melons showed earlier development of and an increased number of bisexual buds that matured to anthesis but also increased the rate of development of the bisexual buds to maturity. Field studies showed that CmACS-3-overexpressing melons had earlier mature bisexual flowers, earlier fruit set, and an increased number of fruits set on closely spaced nodes on the main stem.

Linear free energy relationships for the biotic and abiotic reduction of nitroaromatic compounds

Nitroaromatic compounds (NACs) are ubiquitous environmental contaminants that are susceptible to biological and abiotic reduction. Prior works have found that for the abiotic reduction of NACs, the logarithm of the NACs’ rate constants correlate with one-electron reduction potential values of the NACs (EH,NAC1) according to linear free energy relationships (LFERs). Here, we extend the application of LFERs to the bioreduction of NACs and to the abiotic reduction of NACs by bioreduced (and pasteurized) iron-bearing clay minerals. A linear correlation (R2=0.96) was found between the NACs’ bioreduction rate constants (kobs) and EH,NAC1 values. The LFER slope of log kobs versus EH,NAC1/(2.303RT/F) was close to one (0.97), which implied that the first electron transfer to the NAC was the rate-limiting step of bioreduction. LFERs were also established between NAC abiotic reduction rate constants by bioreduced iron-bearing clay minerals (montmorillonite SWy-2 and nontronite NAu-2). The second-order NAC reduction rate constants (k) by bioreduced SWy-2 and NAu-2 were well correlated to EH,NAC1 (R2=0.97 for both minerals), consistent with bioreduction results. However, the LFER slopes of log k versus EH,NAC1/(2.303RT/F) were significantly less than one (0.48–0.50) for both minerals, indicating that the first electron transfer to the NAC was not the rate-limiting step of abiotic reduction. Finally, we demonstrate that the rate of 4-acetylnitrobenzene reduction by bioreduced SWy-2 and NAu-2 correlated to the reduction potential of the clay (EH,clay, R2=0.95 for both minerals), indicating that the clay reduction potential also influences its reactivity.

Iron(III)-bearing clay minerals enhance bioreduction of nitrobenzene by Shewanella putrefaciens CN32

Iron-bearing clay minerals are ubiquitous in the environment, and the clay-Fe(II)/Fe(III) redox couple plays important roles in abiotic reduction of several classes of environmental contaminants. We investigated the role of Fe-bearing clay minerals on the bioreduction of nitrobenzene. In experiments with Shewanella putrefaciens CN32 and excess electron donor, we found that the Fe-bearing clay minerals montmorillonite SWy-2 and nontronite NAu-2 enhanced nitrobenzene bioreduction. On short time scales (<50 h), nitrobenzene reduction was primarily biologically driven, but at later time points, nitrobenzene reduction by biologically formed structural Fe(II) in the clay minerals became increasingly important. We found that chemically reduced (dithionite) iron-bearing clay minerals reduced nitrobenzene more rapidly than biologically reduced iron-bearing clay minerals despite the minerals having similar structural Fe(II) concentrations. We also found that chemically reduced NAu-2 reduced nitrobenzene faster as compared to chemically reduced SWy-2. The different reactivity of SWy-2 versus NAu-2 toward nitrobenzene was caused by different forms of structural clay-Fe(II) in the clay minerals and different reduction potentials (Eh) of the clay minerals. Because most contaminated aquifers become reduced via biological activity, the reactivity of biogenic clay-Fe(II) toward reducible contaminants is particularly important.

Effects of supplemental organic carbon on long-term reduction and reoxidation of uranium

Higher concentration of ethanol supported more extensive sulfate reduction to sulfide, which protected biogenic UO₂from oxidants reoxidation.

Fiber-integrated 780 nm source for visible parametric generation

We report the development of a fully fiber-integrated pulsed master oscillator power fibre amplifier (MOPFA) source at 780 nm, producing 3.5 W of average power with 410 ps pulses at a repetition rate of 50 MHz. The source consists of an intensity modulated 1560 nm laser diode amplified in an erbium fiber amplifier chain, followed by a fiber coupled periodically poled lithium niobate crystal module for frequency doubling. The source is then used for generating visible light through four-wave mixing in a length of highly nonlinear photonic crystal fiber: 105 mW at 668 nm and 95 mW at 662 nm are obtained, with pump to anti-Stokes conversion slope efficiencies exceeding 6% in both cases.

Thermodynamic controls on the microbial reduction of iron-bearing nontronite and uranium

Iron-bearing phyllosilicate minerals help establish the hydrogeological and geochemical conditions of redox transition zones because of their small size, limited hydraulic conductivity, and redox buffering capacity. The bioreduction of soluble U(VI) to sparingly soluble U(IV) can promote the reduction of clay-Fe(III) through valence cycling. The reductive precipitation of U(VI) to uraninite was previously reported to occur only after a substantial percentage of clay-Fe(III) had been reduced. Using improved analytical techniques, we show that concomitant bioreduction of both U(VI) and clay-Fe(III) by Shewanella putrefaciens CN32 can occur. Soluble electron shuttles were previously shown to enhance both the rate and extent of clay-Fe(III) bioreduction. Using extended incubation periods, we show that electron shuttles enhance only the rate of reduction (overcoming a kinetic limitation) and not the final extent of reduction (a thermodynamic limitation). The first 20% of clay-Fe(III) in nontronite NAu-2 was relatively "easy" (i.e., rapid) to bioreduce; the next 15% of clay-Fe(III) was "harder" (i.e., kinetically limited) to bioreduce, and the remaining 65% of clay-Fe(III) was effectively biologically unreducible. In abiotic experiments with NAu-2 and biogenic uraninite, 16.4% of clay-Fe(III) was reduced in the presence of excess uraninite. In abiotic experiments with NAu-2 and reduced anthraquinone 2,6-disulfonate (AH2DS), 18.5-19.1% of clay-Fe(III) was reduced in the presence of excess and variable concentrations of AH2DS. A thermodynamic model based on published values of the nonstandard state reduction potentials at pH 7.0 (E'H) showed that the abiotic reactions between NAu-2 and uraninite had reached an apparent equilibrium. This model also showed that the abiotic reactions between NAu-2 and AH2DS had reached an apparent equilibrium. The final extent of clay-Fe(III) reduction correlated well with the standard state reduction potential at pH 7.0 (E°'H) of all of the reductants used in these experiments (AH2DS, CN32, dithionite, and uraninite).

Abiotic reduction of nitroaromatic compounds by Fe(II) associated with iron oxides and humic acid

Experiments were conducted to examine the reduction of nitroaromatic compounds (NACs) by Fe(II) associated with iron oxides (goethite, hematite and magnetite) and humic acid. The reduction rate of nitrobenzene decreased in the order of Fe(II) associated with magnetite>Fe(II) associated with goethite>Fe(II) associated with hematite. We proposed a four-step model (adsorption, electron transfer to conduction band, electron transfer to nitrobenzene and electron transfer to crystal lattice) for nitrobenzene reduction by Fe(II) associated with iron oxides. Fe(II)-humic acid complexes did not present reduction capability of nitrobenzene. Furthermore, Humic acid significantly inhibited nitrobenzene reduction by Fe(II) associated with iron oxides. The inhibitory effect of humic acid toward the reduction of nitrobenzene decreased in the order of magnetite>goethite>hematite.

Sequential extraction method for determination of Fe(II/III) and U(IV/VI) in suspensions of iron-bearing phyllosilicates and uranium

Iron-bearing phyllosilicates strongly influence the redox state and mobility of uranium because of their limited hydraulic conductivity, high specific surface area, and redox reactivity. Standard extraction procedures cannot be accurately applied for the determination of clay-Fe(II/III) and U(IV/VI) in clay mineral-U suspensions such that advanced spectroscopic techniques are required. Instead, we developed and validated a sequential extraction method for determination of clay-Fe(II/III) and U(IV/VI) in clay-U suspensions. In our so-called "H(3)PO(4)-HF-H(2)SO(4) sequential extraction" method, H(3)PO(4)-H(2)SO(4) is used first to solubilize and remove U, and the remaining clay pellet is subject to HF-H(2)SO(4) digestion. Physical separation of U and clay eliminates valence cycling between U(IV/VI) and clay-Fe(II/III) that otherwise occurred in the extraction solutions and caused analytical discrepancies. We further developed an "automated anoxic KPA" method to measure soluble U(VI) and total U (calculate U(IV) by difference) and modified the conventional HF-H(2)SO(4) digestion method to eliminate a series of time-consuming weighing steps. We measured the kinetics of uraninite oxidation by nontronite using this sequential extraction method and anoxic KPA method and measured a stoichiometric ratio of 2.19 ± 0.05 mol clay-Fe(II) produced per mol U(VI) produced (theoretical value of 2.0). We found that we were able to recover 98.0-98.5% of the clay Fe and 98.1-98.5% of the U through the sequential extractions. Compared to the theoretical stoichiometric ratio of 2.0, the parallel extractions of 0.5 M HCl for clay-Fe(II) and 1 M NaHCO(3) for U(VI) leached two-times more Fe(II) than U(VI). The parallel extractions of HF-H(2)SO(4) for clay Fe(II) and 1 M NaHCO(3) for U(VI) leached six-times more Fe(II) than U(VI).

Role of ligand-based drug design methodologies toward the discovery of new anti- Alzheimer agents: futures perspectives in Fragment-Based Ligand Design

Alzheimer's disease (AD), a degenerative disease affecting the brain, is the single most common source of dementia in adults. The cause and the progression of AD still remains a mystery among medical experts. As a result, a cure has not yet been discovered, even after decade's worth of research that started since 1906, when the disease was first identified. Despite the efforts of the scientific community, several of the biological receptors associated with AD have not been sufficiently studied to date, limiting in turn the design of new and more potent anti-AD agents. Thus, the search for new drug candidates as inhibitors of different targets associated with AD constitutes an essential part towards the discovery of new and more efficient anti-AD therapies. The present work is focused on the role of the Ligand-Based Drug Design (LBDD) methodologies which have been applied for the elucidation of new molecular entities with high inhibitory activity against targets related with AD. Particular emphasis is given also to the current state of fragment-based ligand approaches as alternatives of the Fragment-Based Drug Discovery (FBDD) methodologies. Finally, several guidelines are offered to show how the use of fragment-based descriptors can be determinant for the design of multi-target inhibitors of proteins associated with AD.

Reduction of nitrobenzene by steel convert slag with Fe(II) system: the role of calcium in steel slag

Experiments were conducted to examine of nitrobenzene reduction by steel convert slag (SCS) with Fe(II) system. The results showed SCS with Fe(II) was an effective reductant for nitrobenzene at pH 5.5-6.5. Further analysis suggested Fe(II) was adsorbed by SCS through ion replacement with SCS-bound Ca(II). More than 81% of the total Ca(II) in SCS was replaced with dissolved Fe(II), indicating a high adsorption capacity for Fe(II) (more than 5.82 mmol Fe(II)/g SCS). A three step mechanism (replacement process, conversion process and electron transfer process) was proposed for nitrobenzene reduction by SCS with Fe(II) system. The amount of Ca(II) in SCS determined the adsorption capacity for Fe(II) and further determined the reduction capacity of SCS with Fe(II) system.

Optical phase conjugation by an As(2)S(3) glass planar waveguide for dispersion-free transmission of WDM-DPSK signals over fiber

We report the first demonstration of optical phase conjugation (OPC) transmission of phase encoded and wavelength-division multiplexed (WDM) signals by the Kerr effect in a planar structured waveguide. The phase conjugated electric field of the signal is produced by four wave mixing pumped by a CW laser during co-propagating with the signal in a highly nonlinear waveguide fabricated in As(2)S(3) glass. Experiments demonstrate the capability of the device to perform dispersion-free transmission through up to 225 km of standard single mode fiber for a 3 × 40 Gb/s WDM signal, with its channels encoded as return-to-zero differential phase shift keying and spaced either 100 or 200 GHz apart. This work represents an important milestone towards demonstrating advanced signal processing of high-speed and broadband optical signals in compact planar waveguides, with the potential for monolithic optical integration.

Simultaneous multi-impairment monitoring of 640 Gb/s signals using photonic chip based RF spectrum analyzer

We report the first demonstration of simultaneous multi-impairment monitoring at ultrahigh bitrates using a THz bandwidth photonic-chip-based radio-frequency (RF) spectrum analyzer. Our approach employs a 7 cm long, highly nonlinear (gamma approximately 9900 /W/km), dispersion engineered chalcogenide planar waveguide to capture the RF spectrum of an ultrafast 640 Gb/s signal, based on cross-phase modulation, from which we numerically retrieve the autocorrelation waveform. The relationship between the retrieved autocorrelation trace and signal impairments is exploited to simultaneously monitor dispersion, in-band optical signal to noise ratio (OSNR) and timing jitter from a single measurement. This novel approach also offers very high OSNR measurement dynamic range (> 30 dB) and is scalable to terabit data rates.

Bioreduction of nitrobenzene, natural organic matter, and hematite by Shewanella putrefaciens CN32

We examined the reduction of nitrobenzene by Shewanella putrefaciens CN32 in the presence of natural organic matter (NOM) and hematite. Bioreduction experiments were conducted with combinations and varied concentrations of nitrobenzene, soil humic acid, Georgetown NOM, hematite, and CN32. Abiotic experiments were conducted to quantify nitrobenzene reduction by biogenic Fe(II) and by bioreduced NOMs. We show that S. putrefaciens CN32 can directly reduce nitrobenzene. Both NOMs enhanced nitrobenzene reduction and the degree of enhancement depended on properties of the NOMs (aromaticity, organic radical content). Hematite enhanced nitrobenzene reduction by indirect reaction with biogenic-Fe(II), however, enhancement was dependent on the availability of excess electron donor. Under electron donor-limiting conditions, reducing equivalents diverted to hematite were not all transferred to nitrobenzene. In systems that contained both NOM and hematite we conclude that NOM-mediated reduction of nitrobenzene was more important than Fe(II)-mediated reduction.

Hepatitis B virus protein preS2 potentially promotes HCC development via its transcriptional activation of hTERT

BACKGROUNDS AND AIMS

Telomerase is significantly reactivated in hepatitis B virus (HBV)-associated hepatocellular carcinoma (HCC). Our previous studies showed that the transactivation unit of HBV surface (S) gene, preS2, could upregulate human telomerase reverse transcriptase (hTERT) expression and telomerase activity of HepG2 cells. Here, we aim to explore the functions, and the underlying mechanisms, of this preS2-mediated hTERT upregulation during HCC development.

METHODS

An antisense blocking assay was performed on HBV-integrated HepG2.2.15 cells. The expression of hTERT was examined in clinical samples to test the role of the preS2-mediated hTERT upregulation in HCC development in vivo. In order to explore the mechanisms of preS2-mediated hTERT upregulation, co-transfection, reporter assays and electrophoretic mobility shift assays (EMSA) were performed.

RESULTS

Blocking preS2 expression reduced hTERT expression, telomerase activity, cell proliferation and tumorigenicity of HepG2.2.15. A region located between -349 and -329 bp upstream of the transcription initiation site of hTERT was identified as responsible for the preS2-mediated effect. preS2 interacted with the preS2-responsible region (PRR) and activated the hTERT promoter. Importantly, hTERT was also highly expressed in preS2-positive human HCC samples. All these findings strongly suggest that preS2 may promote HCC development via hTERT activation.

CONCLUSIONS

HBV protein preS2 upregulates hTERT via the PRR element in promoting HCC development.

Characterization of picosecond pulse nonlinear propagation in chalcogenide As(2)S(3) fiber

We characterize the nonlinear propagation of picosecond pulses in chalcogenide As(2)S(3) single-mode fiber using a pump-probe technique. The cross-phase modulation (XPM)-induced sideband broadening and stimulated Raman scattering (SRS)-induced sideband amplification are measured in order to map out the Raman gain spectrum of this glass across the C-band. We extract the Raman response function from the Raman gain spectrum and determine the power and polarization dependence of the SRS. In contrast to previous work using As(2)Se(3) fiber, we find that the As(2)S(3) fiber does not suffer from large two-photon absorption (TPA) in the wavelength range of the telecommunications band. We achieved a 20 dB peak Raman gain at a Stokes shift of 350 cm(-1) in a 205 mm length of As(2)S(3) single-mode fiber. The Raman gain coefficient is estimated to be 4.3x10(-12) m/W and the threshold pump peak power is estimated to be 16.2 W for the 205 mm As(2)S(3) fiber. We also demonstrate that we can infer the dispersion of the As(2)S(3) fiber and justify the Raman response function by comparing simulation and experimental results.

Terahertz bandwidth RF spectrum analysis of femtosecond pulses using a chalcogenide chip

We report the first demonstration of the use of an RF spectrum analyser with multi-terahertz bandwidth to measure the properties of femtosecond optical pulses. A low distortion and broad measurement bandwidth of 2.78 THz (nearly two orders of magnitude greater than conventional opto-electronic analyzers) was achieved by using a 6 cm long As(2)S(3) chalcogenide waveguide designed for high Kerr nonlinearity and near zero dispersion. Measurements of pulses as short as 260 fs produced from a soliton-effect compressor reveal features not evident from the pulse's optical spectrum. We also applied an inverse Fourier transform numerically to the captured data to re-construct a time-domain waveform that resembled pulse measurement obtained from intensity autocorrelation.

QSPR analysis of air-to-blood distribution of volatile organic compounds

Quantitative structure property relationship (QSPR) models for the prediction of human blood:air partition coefficient (log K(blood)) of volatile organic compounds (VOCs) has been developed based on the linear heuristic method (HM) and non-linear radial basis function neural networks (RBFNNs). Molecular descriptors that are calculated from the structures alone were used to represent the characteristics of the compounds. HM was used both to pre-select the whole descriptor sets and to build the linear model. RBFNN was performed to obtain more accurate models. Both the linear and the non-linear models can give very satisfactory prediction results: the correlation coefficient R was 0.964 and 0.979, and the root-mean-square (RMS) error was 0.3303 and 0.2542 for the whole data set, respectively. The prediction result of the non-linear model is better than that obtained by the linear model. In addition, this paper provides an effective method for predicting log K(blood) from its structures and gives some insight into the structural features related to the solubility of VOCs in human blood.

High bit rate all-optical signal processing in a fiber photonic wire

We report the first demonstration of high bit rate signal processing by a fiber-based photonic wire. We achieve 160 Gb/s demultiplexing via four wave mixing in a 1.9 microm diameter photonic wire tapered from As(2)S(3) chalcogenide glass single mode fibre, with very low pump power requirements ( < 20 mW average power, 0.45 W peak power), enabled by a very high nonlinearity (gamma approximately 7850 W(-1) km (-1) ) and greatly reduced dispersion.

ZHX2 is a repressor of alpha-fetoprotein expression in human hepatoma cell lines

The zinc-fingers and homeoboxes 2 (ZHX2) protein was shown previously to be involved in postnatal repression of α-fetoprotein (AFP) in mice. More recently, loss of ZHX2 expression was often found in human hepatcellular carcinoma (HCC), where AFP is frequently reactivated. Using HepG2 and HepG2.2.15, which express high AFP levels, we show that ZHX2 overexpression significantly decreases of AFP secretion in a dose dependent manner. Furthermore, using LO2 and SMMC7721 cells, which express low AFP levels, we use siRNA inhibition to show that AFP is de-repressed when ZHX2 levels are reduced. This represents the first direct evidence that ZHX2 represses AFP. Co-transfections of ZHX2 and AFP-luciferase reporter genes demonstrate ZHX2 repression is governed by the AFP promoter and requires intact HNF1 binding sites. These data support the idea that ZHX2 contributes to AFP repression in the liver after birth and may also be involved in AFP reactivation in liver cancer.

Classification of estrogen receptor-β ligands on the basis of their binding affinities using support vector machine and linear discriminant analysis

Classification models of estrogen receptor-beta ligands were proposed using linear and nonlinear models. The data set was divided into active and inactive classes on the basis of their binding affinities. The two-class problem (active, inactive) was firstly explored by linear classifier approach, linear discriminant analysis (LDA). In order to get a more accurate prediction model, the nonlinear novel machine learning technique, support vectors machine (SVM), was subsequently used to investigate. The heuristic method (HM) was used to pre-select the whole descriptor sets. The model containing eight descriptors founded by SVM, showed better predictive ability than LDA. The accuracy in prediction for the training, test and overall data sets are 92.9%, 85.8% and 91.4% for SVM, 83.1%, 76.1% and 81.9% for LDA, respectively. The results indicate that SVM can be used as a powerful modeling tool for QSAR studies.

Prediction of atmospheric degradation data for POPs by gene expression programming

Quantitative structure-activity relationship models for the prediction of the mean and the maximum atmospheric degradation half-life values of persistent organic pollutants were developed based on the linear heuristic method (HM) and non-linear gene expression programming (GEP). Molecular descriptors, calculated from the structures alone, were used to represent the characteristics of the compounds. HM was used both to pre-select the whole descriptor sets and to build the linear model. GEP yielded satisfactory prediction results: the square of the correlation coefficient r(2) was 0.80 and 0.81 for the mean and maximum half-life values of the test set, and the root mean square errors were 0.448 and 0.426, respectively. The results of this work indicate that the GEP is a very promising tool for non-linear approximations.

Tunable enhancement of a soliton spectrum using an acoustic long-period grating

We demonstrate a scheme for tunable shaping of a soliton spectrum. Specifically, we show a local enhancement of 6 dB in the pulse spectrum by propagating the pulse through a fiber containing micro-bends generated by a flexural acoustic wave - an acoustic long-period grating (LPG) - followed by nonlinear propagation through uniform fiber. The location of the enhancement peak can be tuned by external control of the acoustic frequency of the LPG. We discuss the potential application of this scheme to tunable supercontinuum sources.

High nonlinearity glass photonic crystal nanowires

Soft glass photonic crystal fibers (PCFs) have been fabricated for the first time with the stack and draw process. The same SF6-PCFs have been successfully tapered using a brush flame method. The transverse structure of the PCF does not collapse in the tapering process and core dimensions of the fabricated photonic nanowire has been measured to be 400 nm in diameter. Supercontinuum radiation in excess of one octave has been generated in both the untapered and tapered PCF and, in the latter case, pulse energy thresholds of 65 picojoules at a pump wavelength of 1550 nm were observed.

All solid photonic bandgap fiber based on an array of oriented rectangular high index rods

We report the fabrication, characterization and modeling of an all-solid photonic bandgap fiber (PBGF) based on an array of oriented rectangular rods. Observed near-field patterns of cladding modes clearly identify the cut-off rod modes at the bandgap edges. The bend losses in this fiber depend on the bend direction, and can be understood by the directional coupling properties of the different rod modes and the modeled density of cladding states.

Energy exchange between colliding solitons in photonic crystal fibers

Collisions of femtosecond solitons in silica core photonic crystal fibers are investigated experimentally and theoretically. Clear spectral signatures of the significant energy exchange between the interacting pulses are reported. Two primary and competing effects causing energy exchange are interpulse Raman scattering, which is insensitive to the phase difference of the colliding solitons, and the phase sensitive interaction via the Kerr nonlinearity.

Polarization instability of solitons in photonic crystal fibers

We present experimental and numerical results demonstrating the existence of polarization instability of femtosecond solitons in small core photonic crystal fibers. The frequency of the solitons in our setup shifts rapidly with propagation along the dispersion curve due to the Raman effect. This process can cause initially stable solitons to become unstable, or vice versa depending on the parameters.

An improved photonic bandgap fiber based on an array of rings

We describe the modeling, fabrication and characterization of a silica-core photonic bandgap fiber based on a 2-d array of raised-index cladding rings. The use of rings to form the cladding is shown to re-order the cladding modes in such a way as to broaden the photonic band gaps and reduce bend sensitivity. We compare the performance of the ring fiber with that of a similar fiber made using solid rods.