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Joeres M, Maksimov P, Höper D, Calvelage S, Calero-Bernal R, Fernández-Escobar M, Koudela B, Blaga R, Vrhovec MG, Stollberg K, Bier N, Sotiraki S, Sroka J, Piotrowska W, Kodym P, Basso W, Conraths FJ, Mercier A, Galal L, Dardé ML, Balea A, Spano F, Schulze C, Peters M, Scuda N, Lundén A, Davidson RK, Terland R, Waap H, de Bruin E, Vatta P, Caccio S, Ortega-Mora LM, Jokelainen P, Schares G. Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method. Eur J Clin Microbiol Infect Dis 2024; 43:355-371. [PMID: 38099986 PMCID: PMC10822014 DOI: 10.1007/s10096-023-04721-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 11/16/2023] [Indexed: 01/28/2024]
Abstract
PURPOSE A new high-resolution next-generation sequencing (NGS)-based method was established to type closely related European type II Toxoplasma gondii strains. METHODS T. gondii field isolates were collected from different parts of Europe and assessed by whole genome sequencing (WGS). In comparison to ME49 (a type II reference strain), highly polymorphic regions (HPRs) were identified, showing a considerable number of single nucleotide polymorphisms (SNPs). After confirmation by Sanger sequencing, 18 HPRs were used to design a primer panel for multiplex PCR to establish a multilocus Ion AmpliSeq typing method. Toxoplasma gondii isolates and T. gondii present in clinical samples were typed with the new method. The sensitivity of the method was tested with serially diluted reference DNA samples. RESULTS Among type II specimens, the method could differentiate the same number of haplotypes as the reference standard, microsatellite (MS) typing. Passages of the same isolates and specimens originating from abortion outbreaks were identified as identical. In addition, seven different genotypes, two atypical and two recombinant specimens were clearly distinguished from each other by the method. Furthermore, almost all SNPs detected by the Ion AmpliSeq method corresponded to those expected based on WGS. By testing serially diluted DNA samples, the method exhibited a similar analytical sensitivity as MS typing. CONCLUSION The new method can distinguish different T. gondii genotypes and detect intra-genotype variability among European type II T. gondii strains. Furthermore, with WGS data additional target regions can be added to the method to potentially increase typing resolution.
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Affiliation(s)
- M Joeres
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Epidemiology, Greifswald - Insel Riems, Germany
| | - P Maksimov
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Epidemiology, Greifswald - Insel Riems, Germany
| | - D Höper
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Diagnostic Virology, Greifswald - Insel Riems, Germany
| | - S Calvelage
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Diagnostic Virology, Greifswald - Insel Riems, Germany
| | - R Calero-Bernal
- SALUVET, Animal Health Department, Faculty of Veterinary Sciences, Complutense University of Madrid, Madrid, Spain
| | - M Fernández-Escobar
- SALUVET, Animal Health Department, Faculty of Veterinary Sciences, Complutense University of Madrid, Madrid, Spain
| | - B Koudela
- Central European Institute of Technology (CEITEC), University of Veterinary Sciences Brno, Brno, Czech Republic
- Faculty of Veterinary Medicine, University of Veterinary Sciences Brno, Brno, Czech Republic
| | - R Blaga
- Anses, INRAE, Ecole Nationale Vétérinaire d'Alfort, Laboratoire de Santé Animale, BIPAR, Maisons-Alfort, France
- University of Agricultural Sciences and Veterinary Medicine, Cluj-Napoca, Romania
| | | | - K Stollberg
- German Federal Institute for Risk Assessment, Department for Biological Safety, Berlin, Germany
| | - N Bier
- German Federal Institute for Risk Assessment, Department for Biological Safety, Berlin, Germany
| | - S Sotiraki
- Veterinary Research Institute, Hellenic Agricultural Organisation-DIMITRA, Thessaloniki, Greece
| | - J Sroka
- Department of Parasitology and Invasive Diseases, National Veterinary Research Institute, Pulawy, Poland
| | - W Piotrowska
- Department of Parasitology and Invasive Diseases, National Veterinary Research Institute, Pulawy, Poland
| | - P Kodym
- Centre of Epidemiology and Microbiology, National Institute of Public Health, Prague, Czech Republic
| | - W Basso
- Institute of Parasitology, Vetsuisse Faculty, University of Bern, Bern, Switzerland
| | - F J Conraths
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Epidemiology, Greifswald - Insel Riems, Germany
| | - A Mercier
- Inserm U1094, IRD U270, Univ. Limoges, CHU Limoges, EpiMaCT - Epidemiology of chronic diseases in tropical zone, Institute of Epidemiology and Tropical Neurology, OmegaHealth, Limoges, France
- Centre National de Référence (CNR) Toxoplasmose Centre Hospitalier-Universitaire Dupuytren, Limoges, France
| | - L Galal
- Inserm U1094, IRD U270, Univ. Limoges, CHU Limoges, EpiMaCT - Epidemiology of chronic diseases in tropical zone, Institute of Epidemiology and Tropical Neurology, OmegaHealth, Limoges, France
| | - M L Dardé
- Inserm U1094, IRD U270, Univ. Limoges, CHU Limoges, EpiMaCT - Epidemiology of chronic diseases in tropical zone, Institute of Epidemiology and Tropical Neurology, OmegaHealth, Limoges, France
- Centre National de Référence (CNR) Toxoplasmose Centre Hospitalier-Universitaire Dupuytren, Limoges, France
| | - A Balea
- University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca, Faculty of Veterinary Medicine, Department of Parasitology and Parasitic Diseases, Cluj-Napoca, Romania
| | - F Spano
- Italian National Institute of Health, Rome, Italy
| | - C Schulze
- Landeslabor Berlin-Brandenburg, Frankfurt (Oder), Germany
| | - M Peters
- Chemisches und Veterinäruntersuchungsamt Westfalen, Standort Arnsberg, Arnsberg, Germany
| | - N Scuda
- Bavarian Health and Food Safety Authority, Erlangen, Germany
| | - A Lundén
- Department of Microbiology, National Veterinary Institute, Uppsala, Sweden
| | - R K Davidson
- Department of Animal Health, Welfare and Food Safety, Norwegian Veterinary Institute, Tromsø, Norway
| | - R Terland
- Department of Analysis and Diagnostics, Norwegian Veterinary Institute, Ås, Norway
| | - H Waap
- Parasitology Laboratory, Instituto Nacional de Investigação Agrária e Veterinária, Oeiras, Portugal
| | - E de Bruin
- Dutch Wildlife Health Centre, Pathology Division, Department of Pathobiology, Faculty of Veterinary Medicine, University of Utrecht, Utrecht, The Netherlands
| | - P Vatta
- Italian National Institute of Health, Rome, Italy
| | - S Caccio
- Italian National Institute of Health, Rome, Italy
| | - L M Ortega-Mora
- SALUVET, Animal Health Department, Faculty of Veterinary Sciences, Complutense University of Madrid, Madrid, Spain
| | - P Jokelainen
- Infectious Disease Preparedness, Statens Serum Institut, Copenhagen, Denmark
| | - G Schares
- Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Epidemiology, Greifswald - Insel Riems, Germany.
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dos Santos FAA, Duarte MD, Carvalho CL, Monteiro M, Carvalho P, Mendonça P, Valente PCLG, Sheikhnejad H, Waap H, Gomes J. Author Correction: Genetic and morphological identification of filarial worm from Iberian hare in Portugal. Sci Rep 2022; 12:20311. [PMID: 36434020 PMCID: PMC9700828 DOI: 10.1038/s41598-022-24734-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Affiliation(s)
- F. A. Abade dos Santos
- grid.9983.b0000 0001 2181 4263Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal ,grid.420943.80000 0001 0190 2100Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157 Oeiras, Portugal ,Associate Laboratory for Animal and Veterinary Sciences (AL4AnimalS), Vila Real, Portugal
| | - M. D. Duarte
- grid.9983.b0000 0001 2181 4263Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal ,grid.420943.80000 0001 0190 2100Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157 Oeiras, Portugal ,Associate Laboratory for Animal and Veterinary Sciences (AL4AnimalS), Vila Real, Portugal
| | - C. L. Carvalho
- grid.420943.80000 0001 0190 2100Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157 Oeiras, Portugal
| | - M. Monteiro
- grid.420943.80000 0001 0190 2100Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157 Oeiras, Portugal
| | - P. Carvalho
- grid.420943.80000 0001 0190 2100Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157 Oeiras, Portugal
| | - P. Mendonça
- grid.420943.80000 0001 0190 2100Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157 Oeiras, Portugal
| | - P. C. L. G. Valente
- grid.9983.b0000 0001 2181 4263Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal
| | - H. Sheikhnejad
- InnovPlantProtect Collaborative Laboratory, Department of Protection of Specific Crops, 7350-478 Elvas, Portugal
| | - H. Waap
- grid.9983.b0000 0001 2181 4263Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal ,grid.420943.80000 0001 0190 2100Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157 Oeiras, Portugal
| | - J. Gomes
- grid.9983.b0000 0001 2181 4263Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal ,grid.420943.80000 0001 0190 2100Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157 Oeiras, Portugal
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Dos Santos FAA, Duarte MD, Carvalho CL, Monteiro M, Carvalho P, Mendonça P, Valente PCLG, Sheikhnejad H, Waap H, Gomes J. Genetic and morphological identification of filarial worm from Iberian hare in Portugal. Sci Rep 2022; 12:9310. [PMID: 35661130 PMCID: PMC9166702 DOI: 10.1038/s41598-022-13354-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 05/24/2022] [Indexed: 11/29/2022] Open
Abstract
The Iberian hare (Lepus granatensis) is an endemic species of the Iberian Peninsula and the only hare species found in Portugal, although also being present in some areas of Spain. The reduction of wild hare populations due to several ecological and sanitary factors, has been raising growing concerns in the recent years. Despite different helminth species were already described in Iberian hares in Portugal, to this date, no filarial worms have been identified in this species. Furthermore, only a few studies on lagomorphs' onchocercid worms are available, referring to other hosts species of hares and/or rabbits. In this study, we describe the presence of filarial worms in the blood vessels of two adult Iberian hares collected in 2019 in continental Portugal. Morphology and sequencing data from the 12S rRNA, coxI, 18S rRNA, myoHC, hsp70 and rbp1 genes, showed that the filaroid species were genetically related with Micipsella numidica. However, the extension of the genetic differences found with M. numidica suggests that the filaroids specimens under study belong to a new species, that we provisionally named Micipsella iberica n. sp.. The body location of this putative new parasite species and its physiological implications indicate that it may constitute a potential menace to the already fragile Iberian hare justifying, therefore, further investigation regarding the morphological characterization, prevalence and real clinical impact of this new parasite in hares.
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Affiliation(s)
- F A Abade Dos Santos
- Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477, Lisboa, Portugal.
- Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157, Oeiras, Portugal.
- Associate Laboratory for Animal and Veterinary Sciences (AL4AnimalS), Vila Real, Portugal.
| | - M D Duarte
- Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477, Lisboa, Portugal
- Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157, Oeiras, Portugal
- Associate Laboratory for Animal and Veterinary Sciences (AL4AnimalS), Vila Real, Portugal
| | - C L Carvalho
- Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157, Oeiras, Portugal
| | - M Monteiro
- Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157, Oeiras, Portugal
| | - P Carvalho
- Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157, Oeiras, Portugal
| | - P Mendonça
- Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157, Oeiras, Portugal
| | - P C L G Valente
- Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477, Lisboa, Portugal
| | - H Sheikhnejad
- InnovPlantProtect Collaborative Laboratory, Department of Protection of Specific Crops, 7350-478, Elvas, Portugal
| | - H Waap
- Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477, Lisboa, Portugal
- Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157, Oeiras, Portugal
| | - J Gomes
- Centre for Interdisciplinary Research in Animal Health (CIISA), Faculdade de Medicina Veterinária, Universidade de Lisboa, Avenida da Universidade Técnica, 1300-477, Lisboa, Portugal
- Instituto Nacional de Investigação Agrária E Veterinária (INIAV, I.P.), Quinta Do Marquês, Av. da República, 2780-157, Oeiras, Portugal
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Cortes HCE, Reis Y, Waap H, Vidal R, Soares H, Marques I, Pereira da Fonseca I, Fazendeiro I, Ferreira ML, Caeiro V, Shkap V, Hemphill A, Leitão A. Isolation of Besnoitia besnoiti from infected cattle in Portugal. Vet Parasitol 2006; 141:226-33. [PMID: 16822614 DOI: 10.1016/j.vetpar.2006.05.022] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2005] [Revised: 04/28/2006] [Accepted: 05/11/2006] [Indexed: 10/24/2022]
Abstract
Besnoitia besnoiti, an obligate intracellular protozoan parasite belonging to the phylum apicomplexa, is the causative agent of bovine besnoitiosis. Besnoitiosis is responsible for significant losses in the cattle industry of Africa and Mediterranean countries due to the high morbidity rate, abortion and infertility in males. The acute stage of disease is associated with the proliferative forms (tachyzoites) and is characterized by fever, whimpery, general weakness and swelling of the superficial lymph nodes. During the following chronic stage, a huge number of cysts are formed mainly in the subcutaneous tissues. This process is non-reversible, and chronic besnoitiosis is characterized by hyper-sclerodermia, hyperkeratosis, alopecia and, in bulls, atrophy, sclerosis and focal necrosis that cause irreversible lesions in the testis. In this paper we report on the identification of large cysts in the skin of a cow and a bull in Portugal, which presented loss of hair and enlargement and pachydermis all over the body. The observation of a two-layered cyst wall within the host cell, the encapsulation of the host cell by a large outer cyst wall, and the subcutaneous localization of the cysts within the host, were characteristic for B. besnoiti. The parasites were isolated from the infected animals and successfully propagated in Vero cells without prior passages in laboratory animals. Morphological characterization of B. besnoiti tachyzoites and the amplification of the 149 bp segment from the internal transcribed spacer 1 (ITS1), aided with specific primers, confirmed the identification of B. besnoiti.
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Affiliation(s)
- H C E Cortes
- Laboratório de Parasitologia, ICAM, Núcleo da Mitra, Universidade de Evora, Ap 94, Evora 7002-554, Portugal.
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