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Lemfack MC, Brandt W, Krüger K, Gurowietz A, Djifack J, Jung JP, Hopf M, Noack H, Junker B, von Reuß S, Piechulla B. Reaction mechanism of the farnesyl pyrophosphate C-methyltransferase towards the biosynthesis of pre-sodorifen pyrophosphate by Serratia plymuthica 4Rx13. Sci Rep 2021; 11:3182. [PMID: 33542330 PMCID: PMC7862628 DOI: 10.1038/s41598-021-82521-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 01/18/2021] [Indexed: 11/25/2022] Open
Abstract
Classical terpenoid biosynthesis involves the cyclization of the linear prenyl pyrophosphate precursors geranyl-, farnesyl-, or geranylgeranyl pyrophosphate (GPP, FPP, GGPP) and their isomers, to produce a huge number of natural compounds. Recently, it was shown for the first time that the biosynthesis of the unique homo-sesquiterpene sodorifen by Serratia plymuthica 4Rx13 involves a methylated and cyclized intermediate as the substrate of the sodorifen synthase. To further support the proposed biosynthetic pathway, we now identified the cyclic prenyl pyrophosphate intermediate pre-sodorifen pyrophosphate (PSPP). Its absolute configuration (6R,7S,9S) was determined by comparison of calculated and experimental CD-spectra of its hydrolysis product and matches with those predicted by semi-empirical quantum calculations of the reaction mechanism. In silico modeling of the reaction mechanism of the FPP C-methyltransferase (FPPMT) revealed a SN2 mechanism for the methyl transfer followed by a cyclization cascade. The cyclization of FPP to PSPP is guided by a catalytic dyad of H191 and Y39 and involves an unprecedented cyclopropyl intermediate. W46, W306, F56, and L239 form the hydrophobic binding pocket and E42 and H45 complex a magnesium cation that interacts with the diphosphate moiety of FPP. Six additional amino acids turned out to be essential for product formation and the importance of these amino acids was subsequently confirmed by site-directed mutagenesis. Our results reveal the reaction mechanism involved in methyltransferase-catalyzed cyclization and demonstrate that this coupling of C-methylation and cyclization of FPP by the FPPMT represents an alternative route of terpene biosynthesis that could increase the terpenoid diversity and structural space.
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Affiliation(s)
- Marie Chantal Lemfack
- Institute of Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, 18059, Rostock, Germany.
| | - Wolfgang Brandt
- Department of Bioorganic Chemistry, Leibniz-Institute of Plant Biochemistry, Weinberg 3, 06120, Halle, Germany.
| | - Katja Krüger
- Institute of Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, 18059, Rostock, Germany.,Department of Internal Medicine I, University Hospital RWTH Aachen, 52074, Aachen, Germany
| | - Alexandra Gurowietz
- Department of Bioorganic Chemistry, Leibniz-Institute of Plant Biochemistry, Weinberg 3, 06120, Halle, Germany.,Institute of Biology, Martin-Luther-Universität Halle-Wittenberg, Weinberg 10, 06120, Halle (Saale), Germany
| | - Jacky Djifack
- Institute of Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, 18059, Rostock, Germany.,PIMAN Consultants, 12 Rue Barthelemy Danjou, 92100, Boulogne-Billancourt, France
| | - Jan-Philip Jung
- Institute of Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, 18059, Rostock, Germany
| | - Marius Hopf
- Institute of Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, 18059, Rostock, Germany.,Duale Hochschule Gera-Eisenach, Weg der Freundschaft 4, 07546, Gera, Germany
| | - Heiko Noack
- Institute of Pharmacy/Biosynthesis of Active Substances, Hoher Weg 8, 06120, Halle (Saale), Germany
| | - Björn Junker
- Institute of Pharmacy/Biosynthesis of Active Substances, Hoher Weg 8, 06120, Halle (Saale), Germany
| | - Stephan von Reuß
- Laboratory of Bioanalytical Chemistry, Institute of Chemistry, University of Neuchatel, Avenue de Bellevaux 51, 2000, Neuchâtel, Switzerland
| | - Birgit Piechulla
- Institute of Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, 18059, Rostock, Germany
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Piechulla B, Magnus N, Lemfack MC, von Reuss S. Terpenoid Cyclization by SAM-Dependent C-Methyl Transferase. Trends in Chemistry 2020. [DOI: 10.1016/j.trechm.2020.01.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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von Reuss S, Domik D, Lemfack MC, Magnus N, Kai M, Weise T, Piechulla B. Sodorifen Biosynthesis in the Rhizobacterium Serratia plymuthica Involves Methylation and Cyclization of MEP-Derived Farnesyl Pyrophosphate by a SAM-Dependent C-Methyltransferase. J Am Chem Soc 2018; 140:11855-11862. [DOI: 10.1021/jacs.8b08510] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Stephan von Reuss
- Laboratory for Bioanalytical Chemistry, Institute of Chemistry, University of Neuchatel, Avenue de Bellevaux 51, CH-2000 Neuchâtel, Switzerland
- Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, Hans-Knoell-Straße 8, D-07745 Jena, Germany
| | - Dajana Domik
- Institute for Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, D-18059 Rostock, Germany
| | - Marie Chantal Lemfack
- Institute for Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, D-18059 Rostock, Germany
| | - Nancy Magnus
- Institute for Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, D-18059 Rostock, Germany
| | - Marco Kai
- Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, Hans-Knoell-Straße 8, D-07745 Jena, Germany
- Institute for Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, D-18059 Rostock, Germany
| | - Teresa Weise
- Institute for Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, D-18059 Rostock, Germany
| | - Birgit Piechulla
- Institute for Biological Sciences, University of Rostock, Albert-Einstein-Straße 3, D-18059 Rostock, Germany
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Lemfack MC, Ravella SR, Lorenz N, Kai M, Jung K, Schulz S, Piechulla B. Novel volatiles of skin-borne bacteria inhibit the growth of Gram-positive bacteria and affect quorum-sensing controlled phenotypes of Gram-negative bacteria. Syst Appl Microbiol 2016; 39:503-515. [DOI: 10.1016/j.syapm.2016.08.008] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Revised: 08/22/2016] [Accepted: 08/25/2016] [Indexed: 11/16/2022]
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Yemele MD, Telefo PB, Lienou LL, Tagne SR, Fodouop CSP, Goka CS, Lemfack MC, Moundipa FP. Ethnobotanical survey of medicinal plants used for pregnant women׳s health conditions in Menoua division-West Cameroon. J Ethnopharmacol 2015; 160:14-31. [PMID: 25449451 DOI: 10.1016/j.jep.2014.11.017] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Revised: 11/06/2014] [Accepted: 11/08/2014] [Indexed: 05/25/2023]
Abstract
ETHNOPHARMACOLOGICAL RELEVANCE In Cameroon, most women use traditional medicine for the treatment of pregnancy and childbirth complaints. In order to identify some of the medicinal plants locally used to alleviate these complaints, an ethnobotanical survey was undertaken in five villages of Menoua Division (West-Cameroon). MATERIALS AND METHODS Interviews were conducted through structured questionnaires among 24 traditional healers and 179 women living either in the town of Dschang or in 4 neighboring villages. After having recorded the interviewee personal information on issues related to medicinal plants utilization, a literature investigation on their therapeutic or pharmacological effects and phytochemical composition was conducted. RESULTS A total of 88 medicinal plants species used to treat 24 conditions occurring during or after pregnancy and belonging to 70 genera or 34 families were recorded. Maximum medicinal uses of plants are reported for the treatment of the following ailments: swelling of legs and ankles (23%), facilitation of delivery (22%), cleaning of the baby (12%). Most herbal remedies are prepared with the leaves (30%), leaves+stems (28%) and whole plant (23%) as maceration (76%). The majority of women who used medicinal plants were very satisfied (75 %) and it is reported that most of these plants are used in the treatment of women health conditions. CONCLUSION Many herbal remedies used for the treatment of pregnant women׳s health conditions in Menoua division-West Cameroon have been revealed. It would therefore be judicious for our government and research institution to evaluate the therapeutic and toxicological potentials of these plants in order to valorize their use.
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Affiliation(s)
- M D Yemele
- University of Dschang, Faculty of Science, Department of Biochemistry, P.O. Box 67, Dschang, Cameroon
| | - P B Telefo
- University of Dschang, Faculty of Science, Department of Biochemistry, P.O. Box 67, Dschang, Cameroon.
| | - L L Lienou
- University of Dschang, Faculty of Science, Department of Biochemistry, P.O. Box 67, Dschang, Cameroon
| | - S R Tagne
- Department of Biomedical Sciences, University of Ngaoundere, P.O. Box 454, Ngaoundere, Cameroon
| | - C S P Fodouop
- Department of Biomedical Sciences, University of Ngaoundere, P.O. Box 454, Ngaoundere, Cameroon
| | - C S Goka
- University of Dschang, Faculty of Science, Department of Biochemistry, P.O. Box 67, Dschang, Cameroon
| | - M C Lemfack
- University of Dschang, Faculty of Science, Department of Biochemistry, P.O. Box 67, Dschang, Cameroon
| | - F P Moundipa
- University of Yaounde I, Faculty of Science, Department of Biochemistry, P.O. Box 812, Yaounde, Cameroon
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Abstract
Scents are well known to be emitted from flowers and animals. In nature, these volatiles are responsible for inter- and intra-organismic communication, e.g. attraction and defence. Consequently, they influence and improve the establishment of organisms and populations in ecological niches by acting as single compounds or in mixtures. Despite the known wealth of volatile organic compounds (VOCs) from species of the plant and animal kingdom, in the past, less attention has been focused on volatiles of microorganisms. Although fast and affordable sequencing methods facilitate the detection of microbial diseases, however, the analysis of signature or fingerprint volatiles will be faster and easier. Microbial VOCs (mVOCs) are presently used as marker to detect human diseases, food spoilage or moulds in houses. Furthermore, mVOCs exhibited antagonistic potential against pathogens in vitro, but their biological roles in the ecosystems remain to be investigated. Information on volatile emission from bacteria and fungi is presently scattered in the literature, and no public and up-to-date collection on mVOCs is available. To address this need, we have developed mVOC, a database available online at http://bioinformatics.charite.de/mvoc.
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Affiliation(s)
- Marie Chantal Lemfack
- University of Rostock, Institute of Biological Sciences, Rostock 18059, Germany, Charité-University Medicine Berlin, Structural Bioinformatics Group, Institute of Physiology & Experimental Clinical Research Center, Berlin 13125, Germany and Charité-University Medicine Berlin, Division of General Pediatrics, Department of Pediatric Oncology and Hematology, Berlin 13353, Germany
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Telefo PB, Lienou LL, Yemele MD, Lemfack MC, Mouokeu C, Goka CS, Tagne SR, Moundipa FP. Ethnopharmacological survey of plants used for the treatment of female infertility in Baham, Cameroon. J Ethnopharmacol 2011; 136:178-87. [PMID: 21540100 DOI: 10.1016/j.jep.2011.04.036] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2010] [Revised: 04/09/2011] [Accepted: 04/16/2011] [Indexed: 05/22/2023]
Abstract
ETHNOPHARMACOLOGICAL RELEVANCE Infertility affects many women in Cameroon, with a rate of about 25%. This study aimed at collecting and documenting information on herbal remedies traditionally used for the treatment of women infertility in Baham subdivision (Western Region of Cameroon). MATERIALS AND METHODS Fieldwork was undertaken as an ethnopharmacological survey involving thirty-two traditional medicine practitioners interviewed in 8 villages of the Baham sub-division. Personal information on interviewees as well as issues related to medicinal use of plants were recorded using structured questionnaires. A literature investigation on the therapeutic or pharmacological properties of recorded medicinal plants was further undertaken. RESULTS From this inventory, a total of 46 plant species belonging to 43 genera and 26 families have been registered. These plants are used in 32 recipes and prepared as maceration (43%) or decoction (40%) of only one plant (25%) or of the mixture of two (22%), three (28%), four (22%) or even seven (3%) medicinal plants. Globally, they are given orally during 30 days, at an average dosage of two glasses per day. The literature confirms the use of the majority of these plants for the treatment of the woman infertility and illnesses that are associated to it. CONCLUSION This research shows that traditional healers of the Baham subdivision use various recipes of medicinal plants for the treatment of female infertility. The valorization of this potential could be important for the conservation of these plants and the improvement of women reproductive health.
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Affiliation(s)
- P B Telefo
- The University of Dschang, Faculty of Science, Department of Biochemistry, P.O. Box 67, Dschang, Cameroon.
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