1
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Mahankali M, Jamiluddin M, Gheisari H, Weaver M, Rahman-Zaman A, Ung C, Kolbeck R, Excoffon K, Down J. 643 Delivery of gp64-pseudotyped lentivirus carrying codon-optimized cystic fibrosis transmembrane conductance regulator provides better functional restoration in human cystic fibrosis airway epithelial cultures. J Cyst Fibros 2022. [DOI: 10.1016/s1569-1993(22)01333-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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2
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Mok D, Weaver M, Hughes I, Jayasinghe R, Hattingh L. Evaluation of the Emergency Cardiology Coordinator, a Senior Nursing Role Within the Emergency Department. Heart Lung Circ 2022. [PMCID: PMC9345560 DOI: 10.1016/j.hlc.2022.06.427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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3
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Allen B, Christenson R, Cohen S, Nowak R, Wilkerson G, Mumma B, Madsen T, McCord J, Huis In 'T Veld M, Massoomi M, Stopyra J, Montero C, Weaver M, Yang K, Mahler S. Evaluation of European Society of Cardiology (ESC) 0/1-hour algorithm in the diagnosis of 90-day major adverse cardiovascular events: a multicenter United States cohort study. Eur Heart J 2020. [DOI: 10.1093/ehjci/ehaa946.1671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Background
The ESC 0/1-hour algorithm using high sensitivity troponin (ESC 0/1-h) is a rapid triage protocol for diagnosing acute coronary syndrome, however the classification performance of the algorithm in the US population is uncertain. Further, evidence for the use of ESC 0/1-h in the long-term diagnosis of major adverse cardiovascular events (MACE) remains limited.
Purpose
To evaluate the performance of the ESC 0/1-h algorithm in diagnosing 90-day MACE in a diverse US cohort.
Methods
In this prospective, multicenter, observational cohort study, adult emergency department patients who were evaluated for suspected ACS were enrolled at eight sites in the US. Serial 1-hour blood samples were collected and high sensitivity troponin T (hs-cTnT) concentrations were measured in a central laboratory using the hs-cTnT assay. Primary outcome included major adverse cardiovascular events (MACE) within 90 (+30) days of enrollment. MACE defined as myocardial infarction (MI), cardiovascular or uncertain death, and coronary revascularization. Presence of MI and cardiovascular death were adjudicated by independent reviewers blinded to hs-cTnT results. Each participant was stratified to one of three risk groups as determined by ESC 0/1-h algorithm. Diagnostic classification performance metrics with exact confidence intervals (i.e. negative predictive value [NPV], positive predicted value [PPV], sensitivity, and specificity) were evaluated for each risk group where appropriate.
Results
Among 1430 eligible participants, 45.8% (655/1430) were women and 36.6% (524/1430) were African American with a mean age of 57.6±12.8 years. MACE at 90-days occurred in 15.5% (221/1430). ESC 0/1-h stratified 59.5% (851/1430) subjects in Rule-Out range and 13.0% (186/1430) subjects in Rule-In range. The Rule-Out criteria had an NPV and sensitivity for 90-day MACE of 96.8% (95% CI: 95.4–97.9%) and 87.8% (95% CI: 82.7–91.8%), respectively. For 90-day cardiovascular death or MI, Rule-Out criteria had an NPV of 98.2% (95% CI: 97.1–99.0%) and sensitivity was 92.4% (95% CI: 87.8–95.7%). The Rule-In criteria had a PPV of 60.8% (95% CI: 53.3–67.8%) for both outcomes. Rule-In criteria had a specificity for 90-day MACE and 90-day cardiovascular death or MI of 94.0% (95% CI: 92.5–95.2%) and 94.1% (95% CI: 92.6–95.3%), respectively. Among the 27.5% (393/1430) participants classified in neither risk groups, the prevalence of 90-day MACE was 20.6% (81/393) and the prevalence of 90-day cardiovascular death or MI was 17.8% (70/393)
Conclusion
In a prospective, multicenter, US cohort, the ESC 0/1-h algorithm was unable to achieve a sufficiently high NPV to safely exclude the diagnosis of MACE within 90 days after emergency department presentation. New hs-cTn algorithms specific to the US population may be warranted.
ESC 0/1-h 90 Day Outcomes
Funding Acknowledgement
Type of funding source: Private company. Main funding source(s): Roche Diagnostics
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Affiliation(s)
- B Allen
- University of Florida, Emergency Medicine, Gainesville, United States of America
| | - R Christenson
- University of Maryland, Pathology, Baltimore, United States of America
| | - S Cohen
- University of Florida, Emergency Medicine, Gainesville, United States of America
| | - R Nowak
- Henry Ford Hospital, Emergency Medicine, Detroit, United States of America
| | - G Wilkerson
- University of Maryland, Emergency Medicine, Baltimore, United States of America
| | - B Mumma
- University of California, Emergency Medicine, Davis, United States of America
| | - T Madsen
- University of Utah, Emergency Medicine, Salt Lake City, United States of America
| | - J McCord
- Henry Ford Hospital, Cardiology, Detroit, United States of America
| | - M Huis In 'T Veld
- University of Maryland, Emergency Medicine, Baltimore, United States of America
| | - M Massoomi
- University of Florida, Cardiology, Gainesville, United States of America
| | - J Stopyra
- Wake Forest University, Emergency Medicine, Winston-Salem, United States of America
| | - C Montero
- University of Florida, Emergency Medicine, Gainesville, United States of America
| | - M Weaver
- University of Florida, Nursing and Biostatistics, Gainesville, United States of America
| | - K Yang
- University of Florida, Nursing and Biostatistics, Gainesville, United States of America
| | - S Mahler
- Wake Forest University, Emergency Medicine, Winston-Salem, United States of America
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Li S, Miyamoto C, Wang B, Giaddui T, Micaily B, Hollander A, Weaver M. A Universal Radiobiological Formula For All Cell Survival Curves Over The Entire Radiation-Dose Range Useful For Quantification Of Equivalent Doses In Hypo-Fractioned SBRT, HDR, And SRS. Int J Radiat Oncol Biol Phys 2020. [DOI: 10.1016/j.ijrobp.2020.07.1656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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5
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Wood WA, Weaver M, Smith-Ryan AE, Hanson ED, Shea TC, Battaglini CL. Lessons learned from a pilot randomized clinical trial of home-based exercise prescription before allogeneic hematopoietic cell transplantation. Support Care Cancer 2020; 28:5291-5298. [PMID: 32112353 PMCID: PMC7483208 DOI: 10.1007/s00520-020-05369-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2019] [Accepted: 02/19/2020] [Indexed: 10/24/2022]
Abstract
Allogeneic hematopoietic cell transplantation (alloHCT) is a life-saving technology that can cure otherwise incurable diseases, but imposes significant physiologic stress upon recipients. This stress leads to short-term toxicity and mid- to long-term physical function impairment in some recipients. Exercise interventions have demonstrated preliminary efficacy in preserving physical function in HCT recipients, but the role of these interventions prior to HCT (prehabilitative) is less known. We tested a 5- to 12-week, prehabilitative higher intensity home-based aerobic exercise intervention in a randomized study of alloHCT candidates. Of 113 patients screened, 34 were randomized to control or intervention groups, 16 underwent pre- and post-intervention peak oxygen consumption (VO2peak) testing, and 12 underwent pre- and post-intervention 6-min walk distance (6MWD) testing. No significant differences in VO2peak or 6MWD were seen pre- to post-intervention between intervention and control groups, but final numbers of evaluable participants in each group were too small to draw inferences regarding the efficacy of the intervention. We conclude that the design of our prehabilitative intervention was not feasible in this pilot randomized study, and make recommendations regarding the design of future exercise intervention studies in alloHCT.
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Affiliation(s)
- William A Wood
- Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
| | - M Weaver
- Department of Mathematics and Statistics, Elon University, Elon, NC, USA
| | - A E Smith-Ryan
- Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Department of Exercise and Sport Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - E D Hanson
- Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Department of Exercise and Sport Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - T C Shea
- Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - C L Battaglini
- Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
- Department of Exercise and Sport Science, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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6
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Robbins R, Rosenberg E, Barger LK, Weaver M, Quan SF, Zeepvat J, Czeisler CA, Grandner MA. 1187 What Types Of Organizations Provide Sleep-focused Workplace Health Promotion Programs For Their Employees? An Analysis Of The 2017 CDC Workplace Health In America Survey. Sleep 2020. [DOI: 10.1093/sleep/zsaa056.1181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Introduction
There has been a rise in workplace health promotion programs (WHPP)’s in the U.S., designed to improve a variety of employee health behaviors such as exercise and nutrition. Yet, relatively few focus on the third pillar of health: Sleep.
Methods
The CDC collected data from a nationally-representative cohort of companies in 2017. Participants in this Workplace Health in America study completed online surveys reporting the type of WHPP offerings at their worksite and characteristics of their worksite, including occupational field (e.g., agriculture, management, wholesale/retail), workforce size (i.e., small: <100; moderate: 100-499; and large: 500+) and company type (e.g., non-profit, profit-private, profit-public, government). We identified factors associated with an increased likelihood of sleep-focused WHPP using logistic regression adjusted for company size and type. Analyses were weighted for nationally-representative estimates.
Results
Of the N=2,843 companies that provided information, N=261 (11.74%) reported having a sleep program. Worksites with large workforces (OR=4.8, p<0.0005), for-profit public companies (OR=9.0, p<0.0005), in wholesale/retail (OR=3.8, p<0.0005), and those with employer-subsidized full health insurance (OR=12.7, p<0.0005) were more likely to have a sleep-focused WHPP. Other predictors included more long-standing WHPP programs (6 years, OR=4.4, p<0.0005), the presence of employee health in the company’s mission (OR=4.5, p<0.0005), leadership buy-in (OR=3.5, p=0.007), and an annual health promotion budget >$50,000 (OR=11.3, p<0.0005).
Conclusion
In general, workplaces with higher budgets, more well-established health promotion programs, and a mission to promote workplace health are more likely to include a sleep program. Also, publicly-traded companies and government were more likely than private companies to have a sleep program. Future research may consider defining barriers among small business and non-profit organizations for implementing sleep-focused workplace health programs.
Support
T32HL007901
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Affiliation(s)
- R Robbins
- Division of Sleep and Circadian Disorders, Boston, MA
| | - E Rosenberg
- Israeli Ministry of Health, Ramat Aviv, ISRAEL
| | - L K Barger
- Division of Sleep and Circadian Disorders, Boston, MA
| | - M Weaver
- Division of Sleep and Circadian Disorders, Boston, MA
| | - S F Quan
- Division of Sleep and Circadian Disorders, Boston, MA
| | | | - C A Czeisler
- Division of Sleep and Circadian Disorders, Boston, MA
| | - M A Grandner
- University of Arizona College of Medicine, Tucson, AZ
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7
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Ruder M, Rus HM, Raj A, Gahan L, O’Mullane B, Danoff-Burg S, Weaver M, Raymann R. 0412 Parents Sleep Longer When School is Out for the Summer: Associations Among Parenthood, Gender, and Season. Sleep 2020. [DOI: 10.1093/sleep/zsaa056.409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Abstract
Introduction
Seasonal effects in sleep are often attributed to day length; however, change in obligatory daily activities might also have an impact on sleep behavior. Longitudinal measurement using consumer sleep technology enables the observation of patterns in sleep behavior in the home environment. We analyzed the impact of parenthood and gender on total sleep time (TST) over the summer break period using data collected in the home.
Methods
Sleep data were collected using the SleepScore mobile application from October 2018 through October 2019, with the summer break period defined as June 25th - August 5th. U.S. age and gender matched samples of parents and non-parents were selected using Mahalanobis distance from a pool of users more likely to have school-aged children. The final samples included n=345 parents (38.7 +/- 4.5 years) and n=345 non-parents (37.8 +/- 4.7 years); both groups were 46% female. Only weeknights (n=34,323) were analyzed to maximize impact of school schedule. Linear regression and independent t-tests were used to analyze main and interaction effects for gender, parenthood, and summer break.
Results
Male gender, parenthood, and summer break were associated with decreased sleep duration (ps < .01). However, during summer break, parents exhibited an increase in TST, with mothers (+5.6 mins) having a greater increase than fathers (+1.1 mins). In contrast, adults without children showed a decrease in TST during summer break, with males having a greater reduction (-8.8 mins) than females (-6.5 mins).
Conclusion
These results suggest that parental status may play a part in seasonal sleep patterns. Contrary to the typical trend of shorter TST during summer, being a parent is associated with longer TST during summer break, with a greater increase for females. This change may be attributed to parents following a less rigid schedule when their children are not in school.
Support
N/A
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Affiliation(s)
- M Ruder
- SleepScore Labs, Carlsbad, CA
| | - H M Rus
- SleepScore Labs, Carlsbad, CA
| | - A Raj
- SleepScore Labs, Carlsbad, CA
| | - L Gahan
- SleepScore Labs, Carlsbad, CA
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8
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Cao M, MacDonald JW, Liu HL, Weaver M, Cortes M, Durosier LD, Burns P, Fecteau G, Desrochers A, Schulkin J, Antonelli MC, Bernier RA, Dorschner M, Bammler TK, Frasch MG. α7 Nicotinic Acetylcholine Receptor Signaling Modulates Ovine Fetal Brain Astrocytes Transcriptome in Response to Endotoxin. Front Immunol 2019; 10:1063. [PMID: 31143190 PMCID: PMC6520997 DOI: 10.3389/fimmu.2019.01063] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 04/25/2019] [Indexed: 11/13/2022] Open
Abstract
Neuroinflammation in utero may result in lifelong neurological disabilities. Astrocytes play a pivotal role in this process, but the mechanisms are poorly understood. No early postnatal treatment strategies exist to enhance neuroprotective potential of astrocytes. We hypothesized that agonism on α7 nicotinic acetylcholine receptor (α7nAChR) in fetal astrocytes will augment their neuroprotective transcriptome profile, while the inhibition of α7nAChR will achieve the opposite. Using an in vivo–in vitro model of developmental programming of neuroinflammation induced by lipopolysaccharide (LPS), we validated this hypothesis in primary fetal sheep astrocytes cultures re-exposed to LPS in the presence of a selective α7nAChR agonist or antagonist. Our RNAseq findings show that a pro-inflammatory astrocyte transcriptome phenotype acquired in vitro by LPS stimulation is reversed with α7nAChR agonistic stimulation. Conversely, α7nAChR inhibition potentiates the pro-inflammatory astrocytic transcriptome phenotype. Furthermore, we conducted a secondary transcriptome analysis against the identical α7nAChR experiments in fetal sheep primary microglia cultures. Similar to findings in fetal microglia, in fetal astrocytes we observed a memory effect of in vivo exposure to inflammation, expressed in a perturbation of the iron homeostasis signaling pathway (hemoxygenase 1, HMOX1), which persisted under pre-treatment with α7nAChR antagonist but was reversed with α7nAChR agonist. For both glia cell types, common pathways activated due to LPS included neuroinflammation signaling and NF-κB signaling in some, but not all comparisons. However, overall, the overlap on the level of signaling pathways was rather minimal. Astrocytes, not microglia—the primary immune cells of the brain, were characterized by unique inhibition patterns of STAT3 pathway due to agonistic stimulation of α7nAChR prior to LPS exposure. Lastly, we discuss the implications of our findings for fetal and postnatal brain development.
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Affiliation(s)
- Mingju Cao
- Department of Obstetrics and Gynaecology and Department of Neurosciences, CHU Ste-Justine Research Centre, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada
| | - James W MacDonald
- Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, United States
| | - Hai L Liu
- Department of Obstetrics and Gynaecology and Department of Neurosciences, CHU Ste-Justine Research Centre, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada
| | - Molly Weaver
- UW Medicine Center for Precision Diagnostics, University of Washington, Seattle, WA, United States
| | - Marina Cortes
- Animal Reproduction Research Centre (CRRA), Faculty of Veterinary Medicine, Université de Montréal, Montréal, QC, Canada
| | - Lucien D Durosier
- Department of Obstetrics and Gynaecology and Department of Neurosciences, CHU Ste-Justine Research Centre, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada
| | - Patrick Burns
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Université de Montréal, Montréal, QC, Canada
| | - Gilles Fecteau
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Université de Montréal, Montréal, QC, Canada
| | - André Desrochers
- Department of Clinical Sciences, Faculty of Veterinary Medicine, Université de Montréal, Montréal, QC, Canada
| | - Jay Schulkin
- Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, United States
| | - Marta C Antonelli
- Instituto de Biología Celular y Neurociencia "Prof. Eduardo De Robertis", Facultad de Medicina, Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Raphael A Bernier
- Department of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, United States
| | - Michael Dorschner
- UW Medicine Center for Precision Diagnostics, University of Washington, Seattle, WA, United States
| | - Theo K Bammler
- Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, United States
| | - Martin G Frasch
- Department of Obstetrics and Gynaecology and Department of Neurosciences, CHU Ste-Justine Research Centre, Faculty of Medicine, Université de Montréal, Montréal, QC, Canada.,Animal Reproduction Research Centre (CRRA), Faculty of Veterinary Medicine, Université de Montréal, Montréal, QC, Canada.,Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, United States.,Center on Human Development and Disability, University of Washington, Seattle, WA, United States
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9
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Sullivan AM, Arsovski AA, Thompson A, Sandstrom R, Thurman RE, Neph S, Johnson AK, Sullivan ST, Sabo PJ, Neri FV, Weaver M, Diegel M, Nemhauser JL, Stamatoyannopoulos JA, Bubb KL, Queitsch C. Mapping and Dynamics of Regulatory DNA in Maturing Arabidopsis thaliana Siliques. Front Plant Sci 2019; 10:1434. [PMID: 31798605 PMCID: PMC6868056 DOI: 10.3389/fpls.2019.01434] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Accepted: 10/16/2019] [Indexed: 05/04/2023]
Abstract
The genome is reprogrammed during development to produce diverse cell types, largely through altered expression and activity of key transcription factors. The accessibility and critical functions of epidermal cells have made them a model for connecting transcriptional events to development in a range of model systems. In Arabidopsis thaliana and many other plants, fertilization triggers differentiation of specialized epidermal seed coat cells that have a unique morphology caused by large extracellular deposits of polysaccharides. Here, we used DNase I-seq to generate regulatory landscapes of A. thaliana seeds at two critical time points in seed coat maturation (4 and 7 DPA), enriching for seed coat cells with the INTACT method. We found over 3,000 developmentally dynamic regulatory DNA elements and explored their relationship with nearby gene expression. The dynamic regulatory elements were enriched for motifs for several transcription factors families; most notably the TCP family at the earlier time point and the MYB family at the later one. To assess the extent to which the observed regulatory sites in seeds added to previously known regulatory sites in A. thaliana, we compared our data to 11 other data sets generated with 7-day-old seedlings for diverse tissues and conditions. Surprisingly, over a quarter of the regulatory, i.e. accessible, bases observed in seeds were novel. Notably, plant regulatory landscapes from different tissues, cell types, or developmental stages were more dynamic than those generated from bulk tissue in response to environmental perturbations, highlighting the importance of extending studies of regulatory DNA to single tissues and cell types during development.
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Affiliation(s)
| | - Andrej A. Arsovski
- Department of Biology, University of Washington, Seattle, WA, United States
| | - Agnieszka Thompson
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Richard Sandstrom
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Robert E. Thurman
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Shane Neph
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Audra K. Johnson
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Shawn T. Sullivan
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Peter J. Sabo
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Fidencio V. Neri
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Molly Weaver
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | - Morgan Diegel
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
| | | | | | - Kerry L. Bubb
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
- *Correspondence: Kerry L. Bubb,
| | - Christine Queitsch
- Department of Genome Sciences, University of Washington, Seattle, WA, United States
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10
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Román LS, Menon BK, Blasco J, Hernández-Pérez M, Dávalos A, Majoie CBLM, Campbell BCV, Guillemin F, Lingsma H, Anxionnat R, Epstein J, Saver JL, Marquering H, Wong JH, Lopes D, Reimann G, Desal H, Dippel DWJ, Coutts S, du Mesnil de Rochemont R, Yavagal D, Ferre JC, Roos YBWEM, Liebeskind DS, Lenthall R, Molina C, Al Ajlan FS, Reddy V, Dowlatshahi D, Sourour NA, Oppenheim C, Mitha AP, Davis SM, Weimar C, van Oostenbrugge RJ, Cobo E, Kleinig TJ, Donnan GA, van der Lugt A, Demchuk AM, Berkhemer OA, Boers AMM, Ford GA, Muir KW, Brown BS, Jovin T, van Zwam WH, Mitchell PJ, Hill MD, White P, Bracard S, Goyal M, Berkhemer OA, Fransen PSS, Beumer D, van den Berg LA, Lingsma HF, Yoo AJ, Schonewille WJ, Vos JA, Nederkoorn PJ, Wermer MJH, van Walderveen MAA, Staals J, Hofmeijer J, van Oostayen JA, Lycklama à Nijeholt GJ, Boiten J, Brouwer PA, Emmer BJ, de Bruijn SF, van Dijk LC, Kappelle J, Lo RH, van Dijk EJ, de Vries J, de Kort PL, van Rooij WJJ, van den Berg JS, van Hasselt BA, Aerden LA, Dallinga RJ, Visser MC, Bot JC, Vroomen PC, Eshghi O, Schreuder TH, Heijboer RJ, Keizer K, Tielbeek AV, den Hertog HM, Gerrits DG, van den Berg-Vos RM, Karas GB, Steyerberg EW, Flach Z, Marquering HA, Sprengers ME, Jenniskens SF, Beenen LF, Zech M, Kowarik M, Seifert C, Schwaiger B, Puri A, Hou S, Wakhloo A, Moonis M, Henniger N, Goddeau R, van den Berg R, Massari F, Minaeian A, Lozano JD, Ramzan M, Stout C, Patel A, Tunguturi A, Onteddu S, Carandang R, Howk M, Koudstaal PJ, Ribó M, Sanjuan E, Rubiera M, Pagola J, Flores A, Muchada M, Meler P, Huerga E, Gelabert S, Coscojuela P, van Zwam WH, Tomasello A, Rodriguez D, Santamarina E, Maisterra O, Boned S, Seró L, Rovira A, Molina CA, Millán M, Muñoz L, Roos YB, Pérez de la Ossa N, Gomis M, Dorado L, López-Cancio E, Palomeras E, Munuera J, García Bermejo P, Remollo S, Castaño C, García-Sort R, van der Lugt A, Cuadras P, Puyalto P, Hernández-Pérez M, Jiménez M, Martínez-Piñeiro A, Lucente G, Dávalos A, Chamorro A, Urra X, Obach V, van Oostenbrugge RJ, Cervera A, Amaro S, Llull L, Codas J, Balasa M, Navarro J, Ariño H, Aceituno A, Rudilosso S, Renu A, Majoie CB, Macho JM, San Roman L, Blasco J, López A, Macías N, Cardona P, Quesada H, Rubio F, Cano L, Lara B, Dippel DW, de Miquel MA, Aja L, Serena J, Cobo E, Albers GW, Lees KR, Arenillas J, Roberts R, Minhas P, Al-Ajlan F, Brown MM, Salluzzi M, Zimmel L, Patel S, Eesa M, Martí-Fàbregas J, Jankowitz B, Serena J, Salvat-Plana M, López-Cancio E, Bracard S, Liebig T, Ducrocq X, Anxionnat R, Baillot PA, Barbier C, Derelle AL, Lacour JC, Richard S, Samson Y, Sourour N, Baronnet-Chauvet F, Stijnen T, Clarencon F, Crozier S, Deltour S, Di Maria F, Le Bouc R, Leger A, Mutlu G, Rosso C, Szatmary Z, Yger M, Andersson T, Zavanone C, Bakchine S, Pierot L, Caucheteux N, Estrade L, Kadziolka K, Leautaud A, Renkes C, Serre I, Desal H, Mattle H, Guillon B, Boutoleau-Bretonniere C, Daumas-Duport B, De Gaalon S, Derkinderen P, Evain S, Herisson F, Laplaud DA, Lebouvier T, Lintia-Gaultier A, Wahlgren N, Pouclet-Courtemanche H, Rouaud T, Rouaud Jaffrenou V, Schunck A, Sevin-Allouet M, Toulgoat F, Wiertlewski S, Gauvrit JY, Ronziere T, Cahagne V, van der Heijden E, Ferre JC, Pinel JF, Raoult H, Mas JL, Meder JF, Al Najjar-Carpentier AA, Birchenall J, Bodiguel E, Calvet D, Domigo V, Ghannouti N, Godon-Hardy S, Guiraud V, Lamy C, Majhadi L, Morin L, Naggara O, Trystram D, Turc G, Berge J, Sibon I, Fleitour N, Menegon P, Barreau X, Rouanet F, Debruxelles S, Kazadi A, Renou P, Fleury O, Pasco-Papon A, Dubas F, Caroff J, Hooijenga I, Godard Ducceschi S, Hamon MA, Lecluse A, Marc G, Giroud M, Ricolfi F, Bejot Y, Chavent A, Gentil A, Kazemi A, Puppels C, Osseby GV, Voguet C, Mahagne MH, Sedat J, Chau Y, Suissa L, Lachaud S, Houdart E, Stapf C, Buffon Porcher F, Pellikaan W, Chabriat H, Guedin P, Herve D, Jouvent E, Mawet J, Saint-Maurice JP, Schneble HM, Turjman F, Nighoghossian N, Berhoune NN, Geerling A, Bouhour F, Cho TH, Derex L, Felix S, Gervais-Bernard H, Gory B, Manera L, Mechtouff L, Ritzenthaler T, Riva R, Lindl-Velema A, Salaris Silvio F, Tilikete C, Blanc R, Obadia M, Bartolini MB, Gueguen A, Piotin M, Pistocchi S, Redjem H, Drouineau J, van Vemde G, Neau JP, Godeneche G, Lamy M, Marsac E, Velasco S, Clavelou P, Chabert E, Bourgois N, Cornut-Chauvinc C, Ferrier A, de Ridder A, Gabrillargues J, Jean B, Marques AR, Vitello N, Detante O, Barbieux M, Boubagra K, Favre Wiki I, Garambois K, Tahon F, Greebe P, Ashok V, Voguet C, Coskun O, Guedin P, Rodesch G, Lapergue B, Bourdain F, Evrard S, Graveleau P, Decroix JP, de Bont-Stikkelbroeck J, Wang A, Sellal F, Ahle G, Carelli G, Dugay MH, Gaultier C, Lebedinsky AP, Lita L, Musacchio RM, Renglewicz-Destuynder C, de Meris J, Tournade A, Vuillemet F, Montoro FM, Mounayer C, Faugeras F, Gimenez L, Labach C, Lautrette G, Denier C, Saliou G, Janssen K, Chassin O, Dussaule C, Melki E, Ozanne A, Puccinelli F, Sachet M, Sarov M, Bonneville JF, Moulin T, Biondi A, Struijk W, De Bustos Medeiros E, 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R, Banaras A, Aeron-Thomas J, Hazel B, Maguire H, Veraque E, Heshmatollah A, Harrison L, Keshvara R, Cunningham J, Schipperen S, Vinken S, van Boxtel T, Koets J, Boers M, Santos E, Borst J, Jansen I, Kappelhof M, Lucas M, Geuskens R, Barros RS, Dobbe R, Csizmadia M, Hill MD, Goyal M, Demchuk AM, Menon BK, Eesa M, Ryckborst KJ, Wright MR, Kamal NR, Andersen L, Randhawa PA, Stewart T, Patil S, Minhas P, Almekhlafi M, Mishra S, Clement F, Sajobi T, Shuaib A, Montanera WJ, Roy D, Silver FL, Jovin TG, Frei DF, Sapkota B, Rempel JL, Thornton J, Williams D, Tampieri D, Poppe AY, Dowlatshahi D, Wong JH, Mitha AP, Subramaniam S, Hull G, Lowerison MW, Sajobi T, Salluzzi M, Wright MR, Maxwell M, Lacusta S, Drupals E, Armitage K, Barber PA, Smith EE, Morrish WF, Coutts SB, Derdeyn C, Demaerschalk B, Yavagal D, Martin R, Brant R, Yu Y, Willinsky RA, Montanera WJ, Weill A, Kenney C, Aram H, Stewart T, Stys PK, Watson TW, Klein G, Pearson D, Couillard P, Trivedi A, Singh D, Klourfeld E, Imoukhuede O, Nikneshan D, Blayney S, Reddy R, Choi P, Horton M, Musuka T, Dubuc V, Field TS, Desai J, Adatia S, Alseraya A, Nambiar V, van Dijk R, Wong JH, Mitha AP, Morrish WF, Eesa M, Newcommon NJ, Shuaib A, Schwindt B, Butcher KS, Jeerakathil T, Buck B, Khan K, Naik SS, Emery DJ, Owen RJ, Kotylak TB, Ashforth RA, Yeo TA, McNally D, Siddiqui M, Saqqur M, Hussain D, Kalashyan H, Manosalva A, Kate M, Gioia L, Hasan S, Mohammad A, Muratoglu M, Williams D, Thornton J, Cullen A, Brennan P, O'Hare A, Looby S, Hyland D, Duff S, McCusker M, Hallinan B, Lee S, McCormack J, Moore A, O'Connor M, Donegan C, Brewer L, Martin A, Murphy S, O'Rourke K, Smyth S, Kelly P, Lynch T, Daly T, O'Brien P, O'Driscoll A, Martin M, Daly T, Collins R, Coughlan T, McCabe D, Murphy S, O'Neill D, Mulroy M, Lynch O, Walsh T, O'Donnell M, Galvin T, Harbison J, McElwaine P, Mulpeter K, McLoughlin C, Reardon M, Harkin E, Dolan E, Watts M, Cunningham N, Fallon C, Gallagher S, Cotter P, Crowe M, Doyle R, Noone I, Lapierre M, Coté VA, Lanthier S, Odier C, Durocher A, Raymond J, Weill A, Daneault N, Deschaintre Y, Jankowitz B, Baxendell L, Massaro L, Jackson-Graves C, Decesare S, Porter P, Armbruster K, Adams A, Billigan J, Oakley J, Ducruet A, Jadhav A, Giurgiutiu DV, Aghaebrahim A, Reddy V, Hammer M, Starr M, Totoraitis V, Wechsler L, Streib S, Rangaraju S, Campbell D, Rocha M, Gulati D, Silver FL, Krings T, Kalman L, Cayley A, Williams J, Stewart T, Wiegner R, Casaubon LK, Jaigobin C, del Campo JM, Elamin E, Schaafsma JD, Willinsky RA, Agid R, Farb R, ter Brugge K, Sapkoda BL, Baxter BW, Barton K, Knox A, Porter A, Sirelkhatim A, Devlin T, Dellinger C, Pitiyanuvath N, Patterson J, Nichols J, Quarfordt S, Calvert J, Hawk H, Fanale C, Frei DF, Bitner A, Novak A, Huddle D, Bellon R, Loy D, Wagner J, Chang I, Lampe E, Spencer B, Pratt R, Bartt R, Shine S, Dooley G, Nguyen T, Whaley M, McCarthy K, Teitelbaum J, Tampieri D, Poon W, Campbell N, Cortes M, Dowlatshahi D, Lum C, Shamloul R, Robert S, Stotts G, Shamy M, 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Hacke W, Jansen O, Jovin TG, Mattle HP, Nogueira RG, Siddiqui AH, Yavagal DR, von Kummer R, Smith W, Turjman F, Hamilton S, Chiacchierini R, Amar A, Sanossian N, Loh Y, Devlin T, Baxter B, Hawk H, Sapkota B, Quarfordt S, Sirelkhatim A, Dellinger C, Barton K, Reddy VK, Ducruet A, Jadhav A, Horev A, Giurgiutiu DV, Totoraitis V, Hammer M, Jankowitz B, Wechsler L, Rocha M, Gulati D, Campbell D, Star M, Baxendell L, Oakley J, Siddiqui A, Hopkins LN, Snyder K, Sawyer R, Hall S, Costalat V, Riquelme C, Machi P, Omer E, Arquizan C, Mourand I, Charif M, Ayrignac X, Menjot de Champfleur N, Leboucq N, Gascou G, Moynier M, du Mesnil de Rochemont R, Singer O, Berkefeld J, Foerch C, Lorenz M, Pfeilschifer W, Hattingen E, Wagner M, You SJ, Lescher S, Braun H, Dehkharghani S, Belagaje SR, Anderson A, Lima A, Obideen M, Haussen D, Dharia R, Frankel M, Patel V, Owada K, Saad A, Amerson L, Horn C, Doppelheuer S, Schindler K, Lopes DK, Chen M, Moftakhar R, Anton C, Smreczak M, Carpenter JS, Boo S, Rai A, 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M, Belden J, Baker C, Connolly LS, Papanagiotou P, Roth C, Kastrup A, Politi M, Brunner F, Alexandrou M, Merdivan H, Ramsey C, Given II C, Renfrow S, Deshmukh V, Sasadeusz K, Vincent F, Thiesing JT, Putnam J, Bhatt A, Kansara A, Caceves D, Lowenkopf T, Yanase L, Zurasky J, Dancer S, Freeman B, Scheibe-Mirek T, Robison J, Rontal A, Roll J, Clark D, Rodriguez M, Fitzsimmons BFM, Zaidat O, Lynch JR, Lazzaro M, Larson T, Padmore L, Das E, Farrow-Schmidt A, Hassan A, Tekle W, Cate C, Jansen O, Cnyrim C, Wodarg F, Wiese C, Binder A, Riedel C, Rohr A, Lang N, Laufs H, Krieter S, Remonda L, Diepers M, Añon J, Nedeltchev K, Kahles T, Biethahn S, Lindner M, Chang V, Gächter C, Esperon C, Guglielmetti M, Arenillas Lara JF, Martínez Galdámez M, Calleja Sanz AI, Cortijo Garcia E, Garcia Bermejo P, Perez S, Mulero Carrillo P, Crespo Vallejo E, Ruiz Piñero M, Lopez Mesonero L, Reyes Muñoz FJ, Brekenfeld C, Buhk JH, Krützelmann A, Thomalla G, Cheng B, Beck C, Hoppe J, Goebell E, Holst B, Grzyska U, Wortmann G, Starkman S, Duckwiler G, Jahan R, Rao N, Sheth S, Ng K, Noorian A, Szeder V, Nour M, McManus M, Huang J, Tarpley J, Tateshima S, Gonzalez N, Ali L, Liebeskind D, Hinman J, Calderon-Arnulphi M, Liang C, Guzy J, Koch S, DeSousa K, Gordon-Perue G, Haussen D, Elhammady M, Peterson E, Pandey V, Dharmadhikari S, Khandelwal P, Malik A, Pafford R, Gonzalez P, Ramdas K, Andersen G, Damgaard D, Von Weitzel-Mudersbach P, Simonsen C, Ruiz de Morales Ayudarte N, Poulsen M, Sørensen L, Karabegovich S, Hjørringgaard M, Hjort N, Harbo T, Sørensen K, Deshaies E, Padalino D, Swarnkar A, Latorre JG, Elnour E, El-Zammar Z, Villwock M, Farid H, Balgude A, Cross L, Hansen K, Holtmannspötter M, Kondziella D, Hoejgaard J, Taudorf S, Soendergaard H, Wagner A, Cronquist M, Stavngaard T, Cortsen M, Krarup LH, Hyldal T, Haring HP, Guggenberger S, Hamberger M, Trenkler J, Sonnberger M, Nussbaumer K, Dominger C, Bach E, Jagadeesan BD, Taylor R, Kim J, Shea K, Tummala R, Zacharatos H, Sandhu D, Ezzeddine M, Grande A, Hildebrandt D, Miller K, Scherber J, Hendrickson A, Jumaa M, Zaidi S, Hendrickson T, Snyder V, Killer-Oberpfalzer M, Mutzenbach J, Weymayr F, Broussalis E, Stadler K, Jedlitschka A, Malek A, Mueller-Kronast N, Beck P, Martin C, Summers D, Day J, Bettinger I, Holloway W, Olds K, Arkin S, Akhtar N, Boutwell C, Crandall S, Schwartzman M, Weinstein C, Brion B, Prothmann S, Kleine J, Kreiser K, Boeckh-Behrens T, Poppert H, Wunderlich S, Koch ML, Biberacher V, Huberle A, Gora-Stahlberg G, Knier B, Meindl T, Utpadel-Fischler D. Imaging features and safety and efficacy of endovascular stroke treatment: a meta-analysis of individual patient-level data. Lancet Neurol 2018; 17:895-904. [DOI: 10.1016/s1474-4422(18)30242-4] [Citation(s) in RCA: 213] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Revised: 06/11/2018] [Accepted: 06/12/2018] [Indexed: 11/29/2022]
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Campbell BCV, van Zwam WH, Goyal M, Menon BK, Dippel DWJ, Demchuk AM, Bracard S, White P, Dávalos A, Majoie CBLM, van der Lugt A, Ford GA, de la Ossa NP, Kelly M, Bourcier R, Donnan GA, Roos YBWEM, Bang OY, Nogueira RG, Devlin TG, van den Berg LA, Clarençon F, Burns P, Carpenter J, Berkhemer OA, Yavagal DR, Pereira VM, Ducrocq X, Dixit A, Quesada H, Epstein J, Davis SM, Jansen O, Rubiera M, Urra X, Micard E, Lingsma HF, Naggara O, Brown S, Guillemin F, Muir KW, van Oostenbrugge RJ, Saver JL, Jovin TG, Hill MD, Mitchell PJ, Berkhemer OA, Fransen PSS, Beumer D, van den Berg LA, Lingsma HF, Yoo AJ, Schonewille WJ, Vos JA, Nederkoorn PJ, Wermer MJH, van Walderveen MAA, Staals J, Hofmeijer J, van Oostayen JA, Lycklama à Nijeholt GJ, Boiten J, Brouwer PA, Emmer BJ, de Bruijn SF, van Dijk LC, Kappelle J, Lo RH, van Dijk EJ, de Vries J, de Kort PL, van Rooij WJJ, van den Berg JS, van Hasselt BA, Aerden LA, Dallinga RJ, Visser MC, Bot JC, Vroomen PC, Eshghi O, Schreuder TH, Heijboer RJ, Keizer K, Tielbeek AV, den Hertog HM, Gerrits DG, van den Berg-Vos RM, Karas GB, Steyerberg EW, Flach Z, Marquering HA, Sprengers ME, Jenniskens SF, Beenen LF, van den Berg R, Koudstaal PJ, van Zwam WH, Roos YB, van der Lugt A, van Oostenbrugge RJ, Wakhloo A, Moonis M, Henninger N, Goddeau R, Massari F, Minaeian A, Lozano JD, Ramzan M, Stout C, Patel A, Majoie CB, Tunguturi A, Onteddu S, Carandang R, Howk M, Ribó M, Sanjuan E, Rubiera M, Pagola J, Flores A, Muchada M, Dippel DW, Meler P, Huerga E, Gelabert S, Coscojuela P, Tomasello A, Rodriguez D, Santamarina E, Maisterra O, Boned S, Seró L, Brown MM, Rovira A, Molina CA, Millán M, Muñoz L, Pérez de la Ossa N, Gomis M, Dorado L, López-Cancio E, Palomeras E, Munuera J, Liebig T, García Bermejo P, Remollo S, Castaño C, García-Sort R, Cuadras P, Puyalto P, Hernández-Pérez M, Jiménez M, Martínez-Piñeiro A, Lucente G, Stijnen T, Dávalos A, Chamorro A, Urra X, Obach V, Cervera A, Amaro S, Llull L, Codas J, Balasa M, Navarro J, Andersson T, Ariño H, Aceituno A, Rudilosso S, Renu A, Macho JM, San Roman L, Blasco J, López A, Macías N, Cardona P, Mattle H, Quesada H, Rubio F, Cano L, Lara B, de Miquel MA, Aja L, Serena J, Cobo E, Albers GW, Lees KR, Wahlgren N, Arenillas J, Roberts R, Minhas P, Al-Ajlan F, Salluzzi M, Zimmel L, Patel S, Eesa M, Martí-Fàbregas J, Jankowitz B, van der Heijden E, Serena J, Salvat-Plana M, López-Cancio E, Bracard S, Ducrocq X, Anxionnat R, Baillot PA, Barbier C, Derelle AL, Lacour JC, Ghannouti N, Richard S, Samson Y, Sourour N, Baronnet-Chauvet F, Clarencon F, Crozier S, Deltour S, Di Maria F, Le Bouc R, Leger A, Fleitour N, Mutlu G, Rosso C, Szatmary Z, Yger M, Zavanone C, Bakchine S, Pierot L, Caucheteux N, Estrade L, Kadziolka K, Hooijenga I, Leautaud A, Renkes C, Serre I, Desal H, Guillon B, Boutoleau-Bretonniere C, Daumas-Duport B, De Gaalon S, Derkinderen P, Evain S, Puppels C, Herisson F, Laplaud DA, Lebouvier T, Lintia-Gaultier A, Pouclet-Courtemanche H, Rouaud T, Rouaud Jaffrenou V, Schunck A, Sevin-Allouet M, Toulgoat F, Pellikaan W, Wiertlewski S, Gauvrit JY, Ronziere T, Cahagne V, Ferre JC, Pinel JF, Raoult H, Mas JL, Meder JF, Al Najjar-Carpentier AA, Geerling A, Birchenall J, Bodiguel E, Calvet D, Domigo V, Godon-Hardy S, Guiraud V, Lamy C, Majhadi L, Morin L, Naggara O, Lindl-Velema A, Trystram D, Turc G, Berge J, Sibon I, Menegon P, Barreau X, Rouanet F, Debruxelles S, Kazadi A, Renou P, van Vemde G, Fleury O, Pasco-Papon A, Dubas F, Caroff J, Godard Ducceschi S, Hamon MA, Lecluse A, Marc G, Giroud M, Ricolfi F, de Ridder A, Bejot Y, Chavent A, Gentil A, Kazemi A, Osseby GV, Voguet C, Mahagne MH, Sedat J, Chau Y, Suissa L, Greebe P, Lachaud S, Houdart E, Stapf C, Buffon Porcher F, Chabriat H, Guedin P, Herve D, Jouvent E, Mawet J, Saint-Maurice JP, de Bont-Stikkelbroeck J, Schneble HM, Turjman F, Nighoghossian N, Berhoune NN, Bouhour F, Cho TH, Derex L, Felix S, Gervais-Bernard H, Gory B, de Meris J, Manera L, Mechtouff L, Ritzenthaler T, Riva R, Salaris Silvio F, Tilikete C, Blanc R, Obadia M, Bartolini MB, Gueguen A, Janssen K, Piotin M, Pistocchi S, Redjem H, Drouineau J, Neau JP, Godeneche G, Lamy M, Marsac E, Velasco S, Clavelou P, Struijk W, Chabert E, Bourgois N, Cornut-Chauvinc C, Ferrier A, Gabrillargues J, Jean B, Marques AR, Vitello N, Detante O, Barbieux M, Licher S, Boubagra K, Favre Wiki I, Garambois K, Tahon F, Ashok V, Voguet C, Coskun O, Guedin P, Rodesch G, Lapergue B, Boodt N, Bourdain F, Evrard S, Graveleau P, Decroix JP, Wang A, Sellal F, Ahle G, Carelli G, Dugay MH, Gaultier C, Ros A, Lebedinsky AP, Lita L, Musacchio RM, Renglewicz-Destuynder C, Tournade A, Vuillemet F, Montoro FM, Mounayer C, Faugeras F, Gimenez L, Venema E, Labach C, Lautrette G, Denier C, Saliou G, Chassin O, Dussaule C, Melki E, Ozanne A, Puccinelli F, Sachet M, Slokkers I, Sarov M, Bonneville JF, Moulin T, Biondi A, De Bustos Medeiros E, Vuillier F, Courtheoux P, Viader F, Apoil-Brissard M, Bataille M, Ganpat RJ, Bonnet AL, Cogez J, Kazemi A, Touze E, Leclerc X, Leys D, Aggour M, Aguettaz P, Bodenant M, Cordonnier C, Mulder M, Deplanque D, Girot M, Henon H, Kalsoum E, Lucas C, Pruvo JP, Zuniga P, Bonafé A, Arquizan C, Costalat V, Saiedie N, Machi P, Mourand I, Riquelme C, Bounolleau P, Arteaga C, Faivre A, Bintner M, Tournebize P, Charlin C, Darcel F, Heshmatollah A, Gauthier-Lasalarie P, Jeremenko M, Mouton S, Zerlauth JB, Lamy C, Hervé D, Hassan H, Gaston A, Barral FG, Garnier P, Schipperen S, Beaujeux R, Wolff V, Herbreteau D, Debiais S, Murray A, Ford G, Muir KW, White P, Brown MM, Clifton A, Vinken S, Freeman J, Ford I, Markus H, Wardlaw J, Lees KR, Molyneux A, Robinson T, Lewis S, Norrie J, Robertson F, van Boxtel T, Perry R, Dixit A, Cloud G, Clifton A, Madigan J, Roffe C, Nayak S, Lobotesis K, Smith C, Herwadkar A, Koets J, Kandasamy N, Goddard T, Bamford J, Subramanian G, Lenthall R, Littleton E, Lamin S, Storey K, Ghatala R, Banaras A, Boers M, Aeron-Thomas J, Hazel B, Maguire H, Veraque E, Harrison L, Keshvara R, Cunningham J, Santos E, Borst J, Jansen I, Kappelhof M, Lucas M, Geuskens R, Barros RS, Dobbe R, Csizmadia M, Hill MD, Goyal M, Demchuk AM, Menon BK, Eesa M, Ryckborst KJ, Wright MR, Kamal NR, Andersen L, Randhawa PA, Stewart T, Patil S, Minhas P, Almekhlafi M, Mishra S, Clement F, Sajobi T, Shuaib A, Montanera WJ, Roy D, Silver FL, Jovin TG, Frei DF, Sapkota B, Rempel JL, Thornton J, Williams D, Tampieri D, Poppe AY, Dowlatshahi D, Wong JH, Mitha AP, Subramaniam S, Hull G, Lowerison MW, Sajobi T, Salluzzi M, Wright MR, Maxwell M, Lacusta S, Drupals E, Armitage K, Barber PA, Smith EE, Morrish WF, Coutts SB, Derdeyn C, Demaerschalk B, Yavagal D, Martin R, Brant R, Yu Y, Willinsky RA, Montanera WJ, Weill A, Kenney C, Aram H, Stewart T, Stys PK, Watson TW, Klein G, Pearson D, Couillard P, Trivedi A, Singh D, Klourfeld E, Imoukhuede O, Nikneshan D, Blayney S, Reddy R, Choi P, Horton M, Musuka T, Dubuc V, Field TS, Desai J, Adatia S, Alseraya A, Nambiar V, van Dijk R, Wong JH, Mitha AP, Morrish WF, Eesa M, Newcommon NJ, Shuaib A, Schwindt B, Butcher KS, Jeerakathil T, Buck B, Khan K, Naik SS, Emery DJ, Owen RJ, Kotylak TB, Ashforth RA, Yeo TA, McNally D, Siddiqui M, Saqqur M, Hussain D, Kalashyan H, Manosalva A, Kate M, Gioia L, Hasan S, Mohammad A, Muratoglu M, Williams D, Thornton J, Cullen A, Brennan P, O'Hare A, Looby S, Hyland D, Duff S, McCusker M, Hallinan B, Lee S, McCormack J, Moore A, O'Connor M, Donegan C, Brewer L, Martin A, Murphy S, O'Rourke K, Smyth S, Kelly P, Lynch T, Daly T, O'Brien P, O'Driscoll A, Martin M, Daly T, Collins R, Coughlan T, McCabe D, Murphy S, O'Neill D, Mulroy M, Lynch O, Walsh T, O'Donnell M, Galvin T, Harbison J, McElwaine P, Mulpeter K, McLoughlin C, Reardon M, Harkin E, Dolan E, Watts M, Cunningham N, Fallon C, Gallagher S, Cotter P, Crowe M, Doyle R, Noone I, Lapierre M, Coté VA, Lanthier S, Odier C, Durocher A, Raymond J, Weill A, Daneault N, Deschaintre Y, Jankowitz B, Baxendell L, Massaro L, Jackson-Graves C, Decesare S, Porter P, Armbruster K, Adams A, Billigan J, Oakley J, Ducruet A, Jadhav A, Giurgiutiu DV, Aghaebrahim A, Reddy V, Hammer M, Starr M, Totoraitis V, Wechsler L, Streib S, Rangaraju S, Campbell D, Rocha M, Gulati D, Silver FL, Krings T, Kalman L, Cayley A, Williams J, Stewart T, Wiegner R, Casaubon LK, Jaigobin C, del Campo JM, Elamin E, Schaafsma JD, Willinsky RA, Agid R, Farb R, ter Brugge K, Sapkoda BL, Baxter BW, Barton K, Knox A, Porter A, Sirelkhatim A, Devlin T, Dellinger C, Pitiyanuvath N, Patterson J, Nichols J, Quarfordt S, Calvert J, Hawk H, Fanale C, Frei DF, Bitner A, Novak A, Huddle D, Bellon R, Loy D, Wagner J, Chang I, Lampe E, Spencer B, Pratt R, Bartt R, Shine S, Dooley G, Nguyen T, Whaley M, McCarthy K, Teitelbaum J, Tampieri D, Poon W, Campbell N, Cortes M, Dowlatshahi D, Lum C, Shamloul R, Robert S, Stotts G, Shamy M, Steffenhagen N, Blacquiere D, Hogan M, AlHazzaa M, Basir G, Lesiuk H, Iancu D, Santos M, Choe H, Weisman DC, Jonczak K, Blue-Schaller A, Shah Q, MacKenzie L, Klein B, Kulandaivel K, Kozak O, Gzesh DJ, Harris LJ, Khoury JS, Mandzia J, Pelz D, Crann S, Fleming L, Hesser K, Beauchamp B, Amato-Marzialli B, Boulton M, Lopez- Ojeda P, Sharma M, Lownie S, Chan R, Swartz R, Howard P, Golob D, Gladstone D, Boyle K, Boulos M, Hopyan J, Yang V, Da Costa L, Holmstedt CA, Turk AS, Navarro R, Jauch E, Ozark S, Turner R, Phillips S, Shankar J, Jarrett J, Gubitz G, Maloney W, Vandorpe R, Schmidt M, Heidenreich J, Hunter G, Kelly M, Whelan R, Peeling L, Burns PA, Hunter A, Wiggam I, Kerr E, Watt M, Fulton A, Gordon P, Rennie I, Flynn P, Smyth G, O'Leary S, Gentile N, Linares G, McNelis P, Erkmen K, Katz P, Azizi A, Weaver M, Jungreis C, Faro S, Shah P, Reimer H, Kalugdan V, Saposnik G, Bharatha A, Li Y, Kostyrko P, Santos M, Marotta T, Montanera W, Sarma D, Selchen D, Spears J, Heo JH, Jeong K, Kim DJ, Kim BM, Kim YD, Song D, Lee KJ, Yoo J, Bang OY, Rho S, Lee J, Jeon P, Kim KH, Cha J, Kim SJ, Ryoo S, Lee MJ, Sohn SI, Kim CH, Ryu HG, Hong JH, Chang HW, Lee CY, Rha J, Davis SM, Donnan GA, Campbell BCV, Mitchell PJ, Churilov L, Yan B, Dowling R, Yassi N, Oxley TJ, Wu TY, Silver G, McDonald A, McCoy R, Kleinig TJ, Scroop R, Dewey HM, Simpson M, Brooks M, Coulton B, Krause M, Harrington TJ, Steinfort B, Faulder K, Priglinger M, Day S, Phan T, Chong W, Holt M, Chandra RV, Ma H, Young D, Wong K, Wijeratne T, Tu H, Mackay E, Celestino S, Bladin CF, Loh PS, Gilligan A, Ross Z, Coote S, Frost T, Parsons MW, Miteff F, Levi CR, Ang T, Spratt N, Kaauwai L, Badve M, Rice H, de Villiers L, Barber PA, McGuinness B, Hope A, Moriarty M, Bennett P, Wong A, Coulthard A, Lee A, Jannes J, Field D, Sharma G, Salinas S, Cowley E, Snow B, Kolbe J, Stark R, King J, Macdonnell R, Attia J, D'Este C, Saver JL, Goyal M, Diener HC, Levy EI, Bonafé A, Mendes Pereira V, Jahan R, Albers GW, Cognard C, Cohen DJ, Hacke W, Jansen O, Jovin TG, Mattle HP, Nogueira RG, Siddiqui AH, Yavagal DR, von Kummer R, Smith W, Turjman F, Hamilton S, Chiacchierini R, Amar A, Sanossian N, Loh Y, Devlin T, Baxter B, Hawk H, Sapkota B, Quarfordt S, Sirelkhatim A, Dellinger C, Barton K, Reddy VK, Ducruet A, Jadhav A, Horev A, Giurgiutiu DV, Totoraitis V, Hammer M, Jankowitz B, Wechsler L, Rocha M, Gulati D, Campbell D, Star M, Baxendell L, Oakley J, Siddiqui A, Hopkins LN, Snyder K, Sawyer R, Hall S, Costalat V, Riquelme C, Machi P, Omer E, Arquizan C, Mourand I, Charif M, Ayrignac X, Menjot de Champfleur N, Leboucq N, Gascou G, Moynier M, du Mesnil de Rochemont R, Singer O, Berkefeld J, Foerch C, Lorenz M, Pfeilschifer W, Hattingen E, Wagner M, You SJ, Lescher S, Braun H, Dehkharghani S, Belagaje SR, Anderson A, Lima A, Obideen M, Haussen D, Dharia R, Frankel M, Patel V, Owada K, Saad A, Amerson L, Horn C, Doppelheuer S, Schindler K, Lopes DK, Chen M, Moftakhar R, Anton C, Smreczak M, Carpenter JS, Boo S, Rai A, Roberts T, Tarabishy A, Gutmann L, Brooks C, Brick J, Domico J, Reimann G, Hinrichs K, Becker M, Heiss E, Selle C, Witteler A, Al-Boutros S, Danch MJ, Ranft A, Rohde S, Burg K, Weimar C, Zegarac V, Hartmann C, Schlamann M, Göricke S, Ringlestein A, Wanke I, Mönninghoff C, Dietzold M, Budzik R, Davis T, Eubank G, Hicks WJ, Pema P, Vora N, Mejilla J, Taylor M, Clark W, Rontal A, Fields J, Peterson B, Nesbit G, Lutsep H, Bozorgchami H, Priest R, Ologuntoye O, Barnwell S, Dogan A, Herrick K, Takahasi C, Beadell N, Brown B, Jamieson S, Hussain MS, Russman A, Hui F, Wisco D, Uchino K, Khawaja Z, Katzan I, Toth G, Cheng-Ching E, Bain M, Man S, Farrag A, George P, John S, Shankar L, Drofa A, Dahlgren R, Bauer A, Itreat A, Taqui A, Cerejo R, Richmond A, Ringleb P, Bendszus M, Möhlenbruch M, Reiff T, Amiri H, Purrucker J, Herweh C, Pham M, Menn O, Ludwig I, Acosta I, Villar C, Morgan W, Sombutmai C, Hellinger F, Allen E, Bellew M, Gandhi R, Bonwit E, Aly J, Ecker RD, Seder D, Morris J, Skaletsky M, Belden J, Baker C, Connolly LS, Papanagiotou P, Roth C, Kastrup A, Politi M, Brunner F, Alexandrou M, Merdivan H, Ramsey C, Given II C, Renfrow S, Deshmukh V, Sasadeusz K, Vincent F, Thiesing JT, Putnam J, Bhatt A, Kansara A, Caceves D, Lowenkopf T, Yanase L, Zurasky J, Dancer S, Freeman B, Scheibe-Mirek T, Robison J, Rontal A, Roll J, Clark D, Rodriguez M, Fitzsimmons BFM, Zaidat O, Lynch JR, Lazzaro M, Larson T, Padmore L, Das E, Farrow-Schmidt A, Hassan A, Tekle W, Cate C, Jansen O, Cnyrim C, Wodarg F, Wiese C, Binder A, Riedel C, Rohr A, Lang N, Laufs H, Krieter S, Remonda L, Diepers M, Añon J, Nedeltchev K, Kahles T, Biethahn S, Lindner M, Chang V, Gächter C, Esperon C, Guglielmetti M, Arenillas Lara JF, Martínez Galdámez M, Calleja Sanz AI, Cortijo Garcia E, Garcia Bermejo P, Perez S, Mulero Carrillo P, Crespo Vallejo E, Ruiz Piñero M, Lopez Mesonero L, Reyes Muñoz FJ, Brekenfeld C, Buhk JH, Krützelmann A, Thomalla G, Cheng B, Beck C, Hoppe J, Goebell E, Holst B, Grzyska U, Wortmann G, Starkman S, Duckwiler G, Jahan R, Rao N, Sheth S, Ng K, Noorian A, Szeder V, Nour M, McManus M, Huang J, Tarpley J, Tateshima S, Gonzalez N, Ali L, Liebeskind D, Hinman J, Calderon-Arnulphi M, Liang C, Guzy J, Koch S, DeSousa K, Gordon-Perue G, Haussen D, Elhammady M, Peterson E, Pandey V, Dharmadhikari S, Khandelwal P, Malik A, Pafford R, Gonzalez P, Ramdas K, Andersen G, Damgaard D, Von Weitzel-Mudersbach P, Simonsen C, Ruiz de Morales Ayudarte N, Poulsen M, Sørensen L, Karabegovich S, Hjørringgaard M, Hjort N, Harbo T, Sørensen K, Deshaies E, Padalino D, Swarnkar A, Latorre JG, Elnour E, El-Zammar Z, Villwock M, Farid H, Balgude A, Cross L, Hansen K, Holtmannspötter M, Kondziella D, Hoejgaard J, Taudorf S, Soendergaard H, Wagner A, Cronquist M, Stavngaard T, Cortsen M, Krarup LH, Hyldal T, Haring HP, Guggenberger S, Hamberger M, Trenkler J, Sonnberger M, Nussbaumer K, Dominger C, Bach E, Jagadeesan BD, Taylor R, Kim J, Shea K, Tummala R, Zacharatos H, Sandhu D, Ezzeddine M, Grande A, Hildebrandt D, Miller K, Scherber J, Hendrickson A, Jumaa M, Zaidi S, Hendrickson T, Snyder V, Killer-Oberpfalzer M, Mutzenbach J, Weymayr F, Broussalis E, Stadler K, Jedlitschka A, Malek A, Mueller-Kronast N, Beck P, Martin C, Summers D, Day J, Bettinger I, Holloway W, Olds K, Arkin S, Akhtar N, Boutwell C, Crandall S, Schwartzman M, Weinstein C, Brion B, Prothmann S, Kleine J, Kreiser K, Boeckh-Behrens T, Poppert H, Wunderlich S, Koch ML, Biberacher V, Huberle A, Gora-Stahlberg G, Knier B, Meindl T, Utpadel-Fischler D, Zech M, Kowarik M, Seifert C, Schwaiger B, Puri A, Hou S. Effect of general anaesthesia on functional outcome in patients with anterior circulation ischaemic stroke having endovascular thrombectomy versus standard care: a meta-analysis of individual patient data. Lancet Neurol 2018; 17:47-53. [DOI: 10.1016/s1474-4422(17)30407-6] [Citation(s) in RCA: 129] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 10/05/2017] [Accepted: 10/11/2017] [Indexed: 10/18/2022]
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Schweer W, Schwartz K, Patience JF, Karriker L, Sparks C, Weaver M, Fitzsimmons M, Burkey TE, Gabler NK. Porcine Reproductive and Respiratory Syndrome virus reduces feed efficiency, digestibility, and lean tissue accretion in grow-finish pigs. Transl Anim Sci 2017; 1:480-488. [PMID: 32704671 PMCID: PMC7204981 DOI: 10.2527/tas2017.0054] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Accepted: 09/08/2017] [Indexed: 11/30/2022] Open
Abstract
Porcine reproductive and respiratory syndrome (PRRS) virus is a major swine virus that causes reproductive impairment in sows, as well as respiratory disease, reduction in growth rates, and mortalities in all ages of pigs. The objective of this study was to quantify the impact PRRS has on grower-finisher pig feed efficiency and tissue accretion rates. Thirty PRRS naïve, littermate pairs of maternal line Choice Genetics gilts (33.6 ± 0.58 kg BW) were selected and pairs split across 2 barns consisting of 5 pens (n = 6 pigs/pen per barn). Pigs in both barns were fed corn-soybean-DDGS diets ad libitum. All pigs in one barn were inoculated (CHAL) via an i.m. injection of a live PRRS strain isolated from the region (0 d post inoculation, dpi), while pigs in the other barn were given a saline control injection (CONT). Pig performance (ADG, ADFI, G:F) was assessed from 35 kg BW until each group reached market BW (128 kg). Additionally, longitudinal apparent total tract digestibility (ATTD) and body composition was assessed using Dual-energy X-ray absorptiometry (DXA) post inoculation (dpi) to estimate lean, protein, fat and bone accretion rates. Serological data from CHAL pigs showed that PRRS titers peaked 7 dpi and these pigs seroconverted by 35 dpi. According to both genomic and protein PRRS titers, CONT pigs were naïve to CHAL throughout the study. The PRRS infection reduced (P < 0.001) ATTD of dry matter, energy and nitrogen by 3 to 5% at 21 dpi and the reduction in ATTD persisted after 65 dpi. Compared to the CONT, CHAL pigs had decreased ADG (0.89 vs. 0.80 kg/d, P < 0.001), ADFI (2.05 vs. 1.93 kg/d, P < 0.001), and G:F (0.44 vs. 0.41 kg/d, P < 0.001) over the entire test period. The CHAL pigs also had attenuated DXA predicted whole body accretion of lean (547 vs. 633 g/d, P = 0.001), protein (109 vs. 126 g/d, P = 0.001) and fat (169 vs. 205 g/d, P = 0.001) compared to their CONT counterparts from dpi 0 to 80. Based on carcass data at slaughter (and consistent with the DXA data), CHAL pigs had leaner carcasses and reduced yields. These data clearly demonstrate that PRRS infection reduces digestibility, feed efficiency and protein accretion rates in grower-finisher pigs.
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Affiliation(s)
- W Schweer
- Department of Animal Science, Iowa State University, Ames 50011
| | - K Schwartz
- Department of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames 50011
| | - J F Patience
- Department of Animal Science, Iowa State University, Ames 50011
| | - L Karriker
- Department of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames 50011
| | - C Sparks
- Huvepharma, Peachtree City, GA, 30269
| | - M Weaver
- Weaver Consulting, Des Moines, IA, 50265
| | | | - T E Burkey
- Department of Animal Science, University of Nebraska, Lincoln 68583
| | - N K Gabler
- Department of Animal Science, Iowa State University, Ames 50011
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Mirzaa GM, Campbell CD, Solovieff N, Goold C, Jansen LA, Menon S, Timms AE, Conti V, Biag JD, Adams C, Boyle EA, Collins S, Ishak G, Poliachik S, Girisha KM, Yeung KS, Chung BHY, Rahikkala E, Gunter SA, McDaniel SS, Macmurdo CF, Bernstein JA, Martin B, Leary R, Mahan S, Liu S, Weaver M, Doerschner M, Jhangiani S, Muzny DM, Boerwinkle E, Gibbs RA, Lupski JR, Shendure J, Saneto RP, Novotny EJ, Wilson CJ, Sellers WR, Morrissey M, Hevner RF, Ojemann JG, Guerrini R, Murphy LO, Winckler W, Dobyns WB. Association of MTOR Mutations With Developmental Brain Disorders, Including Megalencephaly, Focal Cortical Dysplasia, and Pigmentary Mosaicism. JAMA Neurol 2017; 73:836-845. [PMID: 27159400 DOI: 10.1001/jamaneurol.2016.0363] [Citation(s) in RCA: 177] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
IMPORTANCE Focal cortical dysplasia (FCD), hemimegalencephaly, and megalencephaly constitute a spectrum of malformations of cortical development with shared neuropathologic features. These disorders are associated with significant childhood morbidity and mortality. OBJECTIVE To identify the underlying molecular cause of FCD, hemimegalencephaly, and diffuse megalencephaly. DESIGN, SETTING, AND PARTICIPANTS Patients with FCD, hemimegalencephaly, or megalencephaly (mean age, 11.7 years; range, 2-32 years) were recruited from Pediatric Hospital A. Meyer, the University of Hong Kong, and Seattle Children's Research Institute from June 2012 to June 2014. Whole-exome sequencing (WES) was performed on 8 children with FCD or hemimegalencephaly using standard-depth (50-60X) sequencing in peripheral samples (blood, saliva, or skin) from the affected child and their parents and deep (150-180X) sequencing in affected brain tissue. Targeted sequencing and WES were used to screen 93 children with molecularly unexplained diffuse or focal brain overgrowth. Histopathologic and functional assays of phosphatidylinositol 3-kinase-AKT (serine/threonine kinase)-mammalian target of rapamycin (mTOR) pathway activity in resected brain tissue and cultured neurons were performed to validate mutations. MAIN OUTCOMES AND MEASURES Whole-exome sequencing and targeted sequencing identified variants associated with this spectrum of developmental brain disorders. RESULTS Low-level mosaic mutations of MTOR were identified in brain tissue in 4 children with FCD type 2a with alternative allele fractions ranging from 0.012 to 0.086. Intermediate-level mosaic mutation of MTOR (p.Thr1977Ile) was also identified in 3 unrelated children with diffuse megalencephaly and pigmentary mosaicism in skin. Finally, a constitutional de novo mutation of MTOR (p.Glu1799Lys) was identified in 3 unrelated children with diffuse megalencephaly and intellectual disability. Molecular and functional analysis in 2 children with FCD2a from whom multiple affected brain tissue samples were available revealed a mutation gradient with an epicenter in the most epileptogenic area. When expressed in cultured neurons, all MTOR mutations identified here drive constitutive activation of mTOR complex 1 and enlarged neuronal size. CONCLUSIONS AND RELEVANCE In this study, mutations of MTOR were associated with a spectrum of brain overgrowth phenotypes extending from FCD type 2a to diffuse megalencephaly, distinguished by different mutations and levels of mosaicism. These mutations may be sufficient to cause cellular hypertrophy in cultured neurons and may provide a demonstration of the pattern of mosaicism in brain and substantiate the link between mosaic mutations of MTOR and pigmentary mosaicism in skin.
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Affiliation(s)
- Ghayda M Mirzaa
- Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, Washington, USA.,Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA
| | | | - Nadia Solovieff
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - Carleton Goold
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - Laura A Jansen
- Department of Neurology, University of Virginia, Charlottesville, VA, USA
| | - Suchithra Menon
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - Andrew E Timms
- Center for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, Seattle, Washington, USA
| | - Valerio Conti
- Paediatric Neurology, Neurogenetics and Neurobiology Unit and Laboratories, A. Meyer Children's Hospital, and Department of Neuroscience, Pharmacology and Child Health, University of Florence, Florence, Italy
| | - Jonathan D Biag
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - Carissa Adams
- Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA
| | - Evan August Boyle
- Department of Genetics, Stanford University School of Medicine, Stanford, California, USA
| | - Sarah Collins
- Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA
| | - Gisele Ishak
- Department of Radiology, Seattle Children's Hospital, Seattle, Washington, USA
| | - Sandra Poliachik
- Department of Radiology, Seattle Children's Hospital, Seattle, Washington, USA
| | - Katta M Girisha
- Department of Medical Genetics, Kasturba Medical College, Manipal University, Manipal, Karnataka, India
| | - Kit San Yeung
- Department of Pediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China
| | - Brian Hon Yin Chung
- Department of Pediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong, China
| | - Elisa Rahikkala
- PEDEGO Research Group and Medical Research Center Oulu, University of Oulu and Department of Clinical Genetics, Oulu University Hospital, Finland
| | - Sonya A Gunter
- Department of Neurology, University of Virginia, Charlottesville, VA, USA
| | - Sharon S McDaniel
- Pediatric Neurology and Epilepsy, Kaiser Permanente San Francisco Medical Center, San Francisco, California, USA
| | - Colleen Forsyth Macmurdo
- Division of Medical Genetics, Department of Pediatrics, Stanford University, Stanford, California, USA
| | - Jonathan A Bernstein
- Division of Medical Genetics, Department of Pediatrics, Stanford University, Stanford, California, USA
| | - Beth Martin
- Department of Genome Sciences, University of Washington, Seattle, Washington, USA
| | - Rebecca Leary
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - Scott Mahan
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - Shanming Liu
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - Molly Weaver
- Department of Pathology, University of Washington, Seattle, Washington, USA
| | - Michael Doerschner
- Department of Pathology, University of Washington, Seattle, Washington, USA
| | - Shalini Jhangiani
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.,Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA
| | - Donna M Muzny
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.,Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA
| | - Eric Boerwinkle
- Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.,Human Genetics Center, University of Texas Health Science Center at Houston, Houston, Texas, USA
| | - Richard A Gibbs
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.,Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA
| | - James R Lupski
- Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.,Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.,Department of Pediatrics, Baylor College of Medicine, Houston, Texas, USA.,Texas Children's Hospital, Houston, Texas, USA
| | - Jay Shendure
- Department of Genome Sciences, University of Washington, Seattle, Washington, USA
| | - Russell P Saneto
- Division of Pediatric Neurology, University of Washington, Seattle, Washington, USA.,Center for Developmental Therapeutics, Seattle Children's Research Institute, Seattle Washington, USA
| | - Edward J Novotny
- Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA.,Division of Pediatric Neurology, University of Washington, Seattle, Washington, USA
| | | | | | | | - Robert F Hevner
- Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA.,Department of Neurosurgery, University of Washington, Seattle, Washington, USA
| | - Jeffrey G Ojemann
- Department of Neurosurgery, University of Washington, Seattle, Washington, USA
| | - Renzo Guerrini
- Paediatric Neurology, Neurogenetics and Neurobiology Unit and Laboratories, A. Meyer Children's Hospital, and Department of Neuroscience, Pharmacology and Child Health, University of Florence, Florence, Italy.,IRCCS Stella Maris Foundation, Pisa, Italy
| | - Leon O Murphy
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - Wendy Winckler
- Novartis Institutes for BioMedical Research, Inc., Cambridge, MA
| | - William B Dobyns
- Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, Washington, USA.,Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, Washington, USA
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14
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Thayer J, Damiani D, Ford C, Dubrovin M, Gaponenko I, O'Grady CP, Kroeger W, Pines J, Lane TJ, Salnikov A, Schneider D, Tookey T, Weaver M, Yoon CH, Perazzo A. Data systems for the Linac coherent light source. ACTA ACUST UNITED AC 2017; 3:3. [PMID: 28261541 PMCID: PMC5313569 DOI: 10.1186/s40679-016-0037-7] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Accepted: 12/28/2016] [Indexed: 11/10/2022]
Abstract
The data systems for X-ray free-electron laser (FEL) experiments at the Linac coherent light source (LCLS) are described. These systems are designed to acquire and to reliably transport shot-by-shot data at a peak throughput of 5 GB/s to the offline data storage where experimental data and the relevant metadata are archived and made available for user analysis. The analysis and monitoring implementation (AMI) and Photon Science ANAlysis (psana) software packages are described. Psana is open source and freely available.
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Affiliation(s)
- J Thayer
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - D Damiani
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - C Ford
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - M Dubrovin
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - I Gaponenko
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - C P O'Grady
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - W Kroeger
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - J Pines
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - T J Lane
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - A Salnikov
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - D Schneider
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - T Tookey
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - M Weaver
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - C H Yoon
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
| | - A Perazzo
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025 USA
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15
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Thayer J, Damiani D, Ford C, Gaponenko I, Kroeger W, O'Grady C, Pines J, Tookey T, Weaver M, Perazzo A. Data systems for the Linac Coherent Light Source. J Appl Crystallogr 2016. [DOI: 10.1107/s1600576716011055] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The data acquisition and data management systems for X-ray free-electron laser experiments at the Linac Coherent Light Source are described. These systems are designed to acquire and to reliably transport shot-by-shot data at a peak throughput of 5 GB s−1to the offline data storage, where experimental data and the relevant metadata are archived and made available for user analysis. A case study of a serial femtosecond crystallography pipeline is presented.
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16
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Weaver M, Petasecca M, Cutajar D, Lerch M, De Geronimo G, Pinelli D, Cullen A, Prokopovich D, Perevertaylo V, Rosenfeld A. Panoptes: Calibration of a dosimetry system for eye brachytherapy. RADIAT MEAS 2014. [DOI: 10.1016/j.radmeas.2014.03.022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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17
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Sullivan AM, Arsovski AA, Lempe J, Bubb KL, Weirauch MT, Sabo PJ, Sandstrom R, Thurman RE, Neph S, Reynolds AP, Stergachis AB, Vernot B, Johnson AK, Haugen E, Sullivan ST, Thompson A, Neri FV, Weaver M, Diegel M, Mnaimneh S, Yang A, Hughes TR, Nemhauser JL, Queitsch C, Stamatoyannopoulos JA. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana. Cell Rep 2014; 8:2015-2030. [PMID: 25220462 DOI: 10.1016/j.celrep.2014.08.019] [Citation(s) in RCA: 159] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2013] [Revised: 05/20/2014] [Accepted: 08/07/2014] [Indexed: 01/23/2023] Open
Abstract
Our understanding of gene regulation in plants is constrained by our limited knowledge of plant cis-regulatory DNA and its dynamics. We mapped DNase I hypersensitive sites (DHSs) in A. thaliana seedlings and used genomic footprinting to delineate ∼ 700,000 sites of in vivo transcription factor (TF) occupancy at nucleotide resolution. We show that variation associated with 72 diverse quantitative phenotypes localizes within DHSs. TF footprints encode an extensive cis-regulatory lexicon subject to recent evolutionary pressures, and widespread TF binding within exons may have shaped codon usage patterns. The architecture of A. thaliana TF regulatory networks is strikingly similar to that of animals in spite of diverged regulatory repertoires. We analyzed regulatory landscape dynamics during heat shock and photomorphogenesis, disclosing thousands of environmentally sensitive elements and enabling mapping of key TF regulatory circuits underlying these fundamental responses. Our results provide an extensive resource for the study of A. thaliana gene regulation and functional biology.
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Affiliation(s)
| | - Andrej A Arsovski
- Department of Biology, University of Washington, Seattle, WA 98195, USA
| | - Janne Lempe
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Kerry L Bubb
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Matthew T Weirauch
- Center for Autoimmune Genomics and Etiology (CAGE) and Divisions of Biomedical Informatics and Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA
| | - Peter J Sabo
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Richard Sandstrom
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Robert E Thurman
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Shane Neph
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Alex P Reynolds
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Andrew B Stergachis
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Benjamin Vernot
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Audra K Johnson
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Eric Haugen
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Shawn T Sullivan
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Agnieszka Thompson
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Fidencio V Neri
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Molly Weaver
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Morgan Diegel
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
| | - Sanie Mnaimneh
- Donnelly Centre and Department of Molecular Genetics, University of Toronto, Toronto ON M5S 3E1, Canada
| | - Ally Yang
- Donnelly Centre and Department of Molecular Genetics, University of Toronto, Toronto ON M5S 3E1, Canada
| | - Timothy R Hughes
- Donnelly Centre and Department of Molecular Genetics, University of Toronto, Toronto ON M5S 3E1, Canada; Canadian Institute for Advanced Research (CIFAR) Program in Genetic Networks, Toronto ON M5G 1Z8, Canada
| | | | - Christine Queitsch
- Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
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18
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Weaver M, Paoletti D, van Zoest W. The roles of cuing and visual working memory capacity in dynamic oculomotor selection. J Vis 2014. [DOI: 10.1167/14.10.1203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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19
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Aldosari AH, Petasecca M, Espinoza A, Newall M, Fuduli I, Porumb C, Alshaikh S, Alrowaili ZA, Weaver M, Metcalfe P, Carolan M, Lerch MLF, Perevertaylo V, Rosenfeld AB. A two dimensional silicon detectors array for quality assurance in stereotactic radiotherapy: MagicPlate-512. Med Phys 2014; 41:091707. [DOI: 10.1118/1.4892384] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
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20
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Bionta MR, Hartmann N, Weaver M, French D, Nicholson DJ, Cryan JP, Glownia JM, Baker K, Bostedt C, Chollet M, Ding Y, Fritz DM, Fry AR, Kane DJ, Krzywinski J, Lemke HT, Messerschmidt M, Schorb S, Zhu D, White WE, Coffee RN. Spectral encoding method for measuring the relative arrival time between x-ray/optical pulses. Rev Sci Instrum 2014; 85:083116. [PMID: 25173255 DOI: 10.1063/1.4893657] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
The advent of few femtosecond x-ray light sources brings promise of x-ray/optical pump-probe experiments that can measure chemical and structural changes in the 10-100 fs time regime. Widely distributed timing systems used at x-ray Free-Electron Laser facilities are typically limited to above 50 fs fwhm jitter in active x-ray/optical synchronization. The approach of single-shot timing measurements is used to sort results in the event processing stage. This has seen wide use to accommodate the insufficient precision of active stabilization schemes. In this article, we review the current technique for "measure-and-sort" at the Linac Coherent Light Source at the SLAC National Accelerator Laboratory. The relative arrival time between an x-ray pulse and an optical pulse is measured near the experimental interaction region as a spectrally encoded cross-correlation signal. The cross-correlation provides a time-stamp for filter-and-sort algorithms used for real-time sorting. Sub-10 fs rms resolution is common in this technique, placing timing precision at the same scale as the duration of the shortest achievable x-ray pulses.
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Affiliation(s)
- M R Bionta
- Université de Toulouse, UPS, Laboratoire Collisions Agrégats Réactivité, IRSAMC, F-31062 Toulouse, France
| | - N Hartmann
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - M Weaver
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - D French
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - D J Nicholson
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - J P Cryan
- Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA
| | - J M Glownia
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - K Baker
- Lawrence Livermore National Laboratory, P.O. Box 808, Livermore, California 94551, USA
| | - C Bostedt
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - M Chollet
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - Y Ding
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - D M Fritz
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - A R Fry
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - D J Kane
- Mesa Photonics, LLC., 1550 Pacheco St., Santa Fe, New Mexico 87505, USA
| | - J Krzywinski
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - H T Lemke
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - M Messerschmidt
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - S Schorb
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - D Zhu
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - W E White
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
| | - R N Coffee
- The Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA
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21
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Blaj G, Caragiulo P, Carini G, Carron S, Dragone A, Freytag D, Haller G, Hart P, Herbst R, Herrmann S, Hasi J, Kenney C, Markovic B, Nishimura K, Osier S, Pines J, Segal J, Tomada A, Weaver M. Detector Development for the Linac Coherent Light Source. ACTA ACUST UNITED AC 2014. [DOI: 10.1080/08940886.2014.930803] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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22
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John S, Sabo PJ, Canfield TK, Lee K, Vong S, Weaver M, Wang H, Vierstra J, Reynolds AP, Thurman RE, Stamatoyannopoulos JA. Genome-scale mapping of DNase I hypersensitivity. Curr Protoc Mol Biol 2014; Chapter 27:Unit 21.27. [PMID: 23821440 DOI: 10.1002/0471142727.mb2127s103] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
DNase I-seq is a global and high-resolution method that uses the nonspecific endonuclease DNase I to map chromatin accessibility. These accessible regions, designated as DNase I hypersensitive sites (DHSs), define the regulatory features, (e.g., promoters, enhancers, insulators, and locus control regions) of complex genomes. In this unit, methods are described for nuclei isolation, digestion of nuclei with limiting concentrations of DNase I, and the biochemical fractionation of DNase I hypersensitive sites in preparation for high-throughput sequencing. DNase I-seq is an unbiased and robust method that is not predicated on an a priori understanding of regulatory patterns or chromatin features.
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Affiliation(s)
- Sam John
- Department of Genome Sciences, University of Washington, Seattle, Washington, USA
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23
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Rao SPS, Lakshminarayana SB, Kondreddi RR, Herve M, Camacho LR, Bifani P, Kalapala SK, Jiricek J, Ma NL, Tan BH, Ng SH, Nanjundappa M, Ravindran S, Seah PG, Thayalan P, Lim SH, Lee BH, Goh A, Barnes WS, Chen Z, Gagaring K, Chatterjee AK, Pethe K, Kuhen K, Walker J, Feng G, Babu S, Zhang L, Blasco F, Beer D, Weaver M, Dartois V, Glynne R, Dick T, Smith PW, Diagana TT, Manjunatha UH. Indolcarboxamide Is a Preclinical Candidate for Treating Multidrug-Resistant Tuberculosis. Sci Transl Med 2013; 5:214ra168. [DOI: 10.1126/scitranslmed.3007355] [Citation(s) in RCA: 111] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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24
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Dubey JP, Van Why K, Verma SK, Choudhary S, Kwok OCH, Khan A, Behinke MS, Sibley LD, Ferreira LR, Oliveira S, Weaver M, Stewart R, Su C. Genotyping Toxoplasma gondii from wildlife in Pennsylvania and identification of natural recombinants virulent to mice. Vet Parasitol 2013; 200:74-84. [PMID: 24332401 DOI: 10.1016/j.vetpar.2013.11.001] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2013] [Revised: 10/30/2013] [Accepted: 11/01/2013] [Indexed: 11/24/2022]
Abstract
Recent studies indicated the predominance of Toxoplasma gondii haplogroup 12 in wildlife in the USA. However, still little is known of the genetic diversity of this parasite circulating in wildlife. In the present study, we tested coyotes (Canis latrans), red foxes (Vulpes vulpes), white-tailed deer (Odocoileus virginianus), and geese (Branta canadensis) from the state of Pennsylvania for T. gondii infection. Antibodies to T. gondii were found in 160 of 367 animals, including 92 (34.5%) of 266 coyotes, 49 (62.0%) of 79 white-tailed deer, 17 (85.0%) of 20 red fox, and two of two Canada geese tested by the modified agglutination test (cut off titer 1:25). Tissues from 105 seropositive animals were bioassayed in mice, and viable T. gondii was isolated from 29 animals, including 10 of 53 coyotes, 11 of 16 foxes, 7 of 49 deer, and one of one goose. DNA isolated from culture-derived tachyzoites of these isolates was characterized initially using multilocus PCR-RFLP markers. Nine genotypes were revealed, including ToxoDB PCR-RFLP #1 (4 isolates), #2 (2 isolates), #3 (4 isolates), #4 (6 isolates), #5 (4 isolates), #54 (1 isolate), #141 (1 isolate), #143 (1 isolate), and #216 (6 isolates), indicating high genetic diversity of T. gondii in wildlife in Pennsylvania. Pathogenicity of six T. gondii isolates (5 of #216 and #141) was determined in outbred Swiss Webster mice. Three of #216 and the #141 isolates were acute virulent to mice, and the other 2 #216 isolates were intermediate virulent. To determine the extent of genetic variation of these as well as a few recently reported virulent isolates from wildlife in North America, intron sequences were generated. Analysis of intron sequences and PCR-RFLP genotyping results indicated that the #216 isolates are likely derived from recombination of the clonal type I and III lineages. To determine if T. gondii virulence can be predicted by typing, we genotyped a collection of strains using PCR-RFLP markers for polymorphic genes ROP5, ROP16, ROP18 and GRA15, which are known to interact with host immune response. The results showed that there is an association of genotypes of ROP5 and ROP18 with mouse-virulence, however, additional gene(s) may also contribute to virulence in distinct T. gondii genotypes.
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Affiliation(s)
- J P Dubey
- United States Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center, Animal Parasitic Diseases Laboratory, Building 1001, Beltsville, MD 20705-2350, USA.
| | - K Van Why
- United States Department of Agriculture, Animal Plant Health Inspection Service, Wildlife Services, Harrisburg, PA 17106-0827, USA
| | - S K Verma
- United States Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center, Animal Parasitic Diseases Laboratory, Building 1001, Beltsville, MD 20705-2350, USA
| | - S Choudhary
- United States Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center, Animal Parasitic Diseases Laboratory, Building 1001, Beltsville, MD 20705-2350, USA
| | - O C H Kwok
- United States Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center, Animal Parasitic Diseases Laboratory, Building 1001, Beltsville, MD 20705-2350, USA
| | - A Khan
- Department of Molecular Microbiology, Washington University School of Medicine, 660 S. Euclid Avenue, St. Louis, MO 63110, USA
| | - M S Behinke
- Department of Molecular Microbiology, Washington University School of Medicine, 660 S. Euclid Avenue, St. Louis, MO 63110, USA
| | - L D Sibley
- Department of Molecular Microbiology, Washington University School of Medicine, 660 S. Euclid Avenue, St. Louis, MO 63110, USA
| | - L R Ferreira
- United States Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center, Animal Parasitic Diseases Laboratory, Building 1001, Beltsville, MD 20705-2350, USA
| | - S Oliveira
- United States Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center, Animal Parasitic Diseases Laboratory, Building 1001, Beltsville, MD 20705-2350, USA
| | - M Weaver
- Department of Biology, College of Arts and Sciences, Shippensburg University, Shippensburg, PA 17257, USA
| | - R Stewart
- Department of Biology, College of Arts and Sciences, Shippensburg University, Shippensburg, PA 17257, USA
| | - C Su
- Department of Microbiology, The University of Tennessee, Knoxville, TN 37996-0845, USA
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25
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Carvill GL, Heavin SB, Yendle SC, McMahon JM, O’Roak BJ, Cook J, Khan A, Dorschner MO, Weaver M, Calvert S, Malone S, Wallace G, Stanley T, Bye AME, Bleasel A, Howell KB, Kivity S, Mackay MT, Rodriguez-Casero V, Webster R, Korczyn A, Afawi Z, Zelnick N, Lerman-Sagie T, Lev D, Møller RS, Gill D, Andrade DM, Freeman JL, Sadleir LG, Shendure J, Berkovic SF, Scheffer IE, Mefford HC. Targeted resequencing in epileptic encephalopathies identifies de novo mutations in CHD2 and SYNGAP1. Nat Genet 2013; 45:825-30. [PMID: 23708187 PMCID: PMC3704157 DOI: 10.1038/ng.2646] [Citation(s) in RCA: 460] [Impact Index Per Article: 41.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2012] [Accepted: 05/01/2013] [Indexed: 12/16/2022]
Abstract
Epileptic encephalopathies are a devastating group of epilepsies with poor prognosis, of which the majority are of unknown etiology. We perform targeted massively parallel resequencing of 19 known and 46 candidate genes for epileptic encephalopathy in 500 affected individuals (cases) to identify new genes involved and to investigate the phenotypic spectrum associated with mutations in known genes. Overall, we identified pathogenic mutations in 10% of our cohort. Six of the 46 candidate genes had 1 or more pathogenic variants, collectively accounting for 3% of our cohort. We show that de novo CHD2 and SYNGAP1 mutations are new causes of epileptic encephalopathies, accounting for 1.2% and 1% of cases, respectively. We also expand the phenotypic spectra explained by SCN1A, SCN2A and SCN8A mutations. To our knowledge, this is the largest cohort of cases with epileptic encephalopathies to undergo targeted resequencing. Implementation of this rapid and efficient method will change diagnosis and understanding of the molecular etiologies of these disorders.
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Affiliation(s)
- Gemma L. Carvill
- Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, Washington, 98195, USA
| | - Sinéad B. Heavin
- Epilepsy Research Centre, Department of Medicine, University of Melbourne, Austin Health, Melbourne, Victoria, Australia
| | - Simone C. Yendle
- Epilepsy Research Centre, Department of Medicine, University of Melbourne, Austin Health, Melbourne, Victoria, Australia
| | - Jacinta M. McMahon
- Epilepsy Research Centre, Department of Medicine, University of Melbourne, Austin Health, Melbourne, Victoria, Australia
| | - Brian J. O’Roak
- Department of Genome Sciences, University of Washington, Seattle, Washington, 98195, USA
| | - Joseph Cook
- Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, Washington, 98195, USA
| | - Adiba Khan
- Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, Washington, 98195, USA
| | - Michael O Dorschner
- Department of Psychiatry & Behavioral Sciences, University of Washington, Seattle, Washington, 98195, USA
- Veteran Affairs Puget Sound Health Care System, Seattle, WA 98108, USA
| | - Molly Weaver
- Department of Psychiatry & Behavioral Sciences, University of Washington, Seattle, Washington, 98195, USA
- Veteran Affairs Puget Sound Health Care System, Seattle, WA 98108, USA
| | - Sophie Calvert
- Neurosciences Children’s Health Queensland, Royal and Mater Children’s Hospitals, Brisbane, Queensland, Australia
| | - Stephen Malone
- Neurosciences Children’s Health Queensland, Royal and Mater Children’s Hospitals, Brisbane, Queensland, Australia
| | - Geoffrey Wallace
- Neurosciences Children’s Health Queensland, Royal and Mater Children’s Hospitals, Brisbane, Queensland, Australia
| | - Thorsten Stanley
- Department of Paediatrics, School of Medicine and Health Sciences, University of Otago, Wellington, New Zealand
| | - Ann M. E. Bye
- Department of Paediatric Neurology, University of New South Wales, Sydney Children’s Hospital, Sydney, New South Wales, Australia
| | - Andrew Bleasel
- Westmead Hospital, University of Sydney, Sydney, New South Wales, Australia
| | - Katherine B. Howell
- Department of Neurology, The Royal Children’s Hospital, Parkville, Melbourne, Victoria, Australia
| | - Sara Kivity
- Epilepsy Unit, Schneider Children’s Medical Center of Israel, Petach Tikvah, Israel
| | - Mark T. Mackay
- Department of Neurology, The Royal Children’s Hospital, Parkville, Melbourne, Victoria, Australia
- Critical Care & Neurosciences Theme, Murdoch Childrens Research Institute, Melbourne, Victoria, Australia
- Department of Paediatrics, The University of Melbourne, The Royal Children’s Hospital, Melbourne, Victoria, Australia
| | | | - Richard Webster
- TY Nelson Department of Neurology, The Children's Hospital at Westmead, Sydney, New South Wales, Australia
| | - Amos Korczyn
- Department of Neurology, Tel-Aviv University, Tel-Aviv, Israel
| | - Zaid Afawi
- Tel-Aviv University Medical School, Tel-Aviv, Israel
| | - Nathanel Zelnick
- Department of Pediatrics, Carmel Medical Center, Technion Faculty of Medicine, Haifa, Israel
| | - Tally Lerman-Sagie
- Metabolic-Neurogenetic Service, Wolfson Medical Center, Holon, and Sackler School of Medicine, Tel-Aviv University, Tel-Aviv, Israel
| | - Dorit Lev
- Metabolic-Neurogenetic Service, Wolfson Medical Center, Holon, and Sackler School of Medicine, Tel-Aviv University, Tel-Aviv, Israel
| | | | - Deepak Gill
- TY Nelson Department of Neurology, The Children's Hospital at Westmead, Sydney, New South Wales, Australia
| | - Danielle M. Andrade
- Division of Neurology, Department of Medicine, University of Toronto, Toronto Western Hospital, Krembil Neurosciences Program. Toronto, Canada
| | - Jeremy L. Freeman
- Department of Neurology, The Royal Children’s Hospital, Parkville, Melbourne, Victoria, Australia
- Critical Care & Neurosciences Theme, Murdoch Childrens Research Institute, Melbourne, Victoria, Australia
| | - Lynette G. Sadleir
- Department of Paediatrics, School of Medicine and Health Sciences, University of Otago, Wellington, New Zealand
| | - Jay Shendure
- Department of Genome Sciences, University of Washington, Seattle, Washington, 98195, USA
| | - Samuel F. Berkovic
- Epilepsy Research Centre, Department of Medicine, University of Melbourne, Austin Health, Melbourne, Victoria, Australia
| | - Ingrid E. Scheffer
- Epilepsy Research Centre, Department of Medicine, University of Melbourne, Austin Health, Melbourne, Victoria, Australia
- Department of Neurology, The Royal Children’s Hospital, Parkville, Melbourne, Victoria, Australia
- Department of Paediatrics, The University of Melbourne, The Royal Children’s Hospital, Melbourne, Victoria, Australia
- Florey Institute, Melbourne, Victoria, Australia
| | - Heather C. Mefford
- Division of Genetic Medicine, Department of Pediatrics, University of Washington, Seattle, Washington, 98195, USA
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26
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Wang H, Maurano MT, Qu H, Varley KE, Gertz J, Pauli F, Lee K, Canfield T, Weaver M, Sandstrom R, Thurman RE, Kaul R, Myers RM, Stamatoyannopoulos JA. Widespread plasticity in CTCF occupancy linked to DNA methylation. Genome Res 2013; 22:1680-8. [PMID: 22955980 PMCID: PMC3431485 DOI: 10.1101/gr.136101.111] [Citation(s) in RCA: 414] [Impact Index Per Article: 37.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
CTCF is a ubiquitously expressed regulator of fundamental genomic processes including transcription, intra- and interchromosomal interactions, and chromatin structure. Because of its critical role in genome function, CTCF binding patterns have long been assumed to be largely invariant across different cellular environments. Here we analyze genome-wide occupancy patterns of CTCF by ChIP-seq in 19 diverse human cell types, including normal primary cells and immortal lines. We observed highly reproducible yet surprisingly plastic genomic binding landscapes, indicative of strong cell-selective regulation of CTCF occupancy. Comparison with massively parallel bisulfite sequencing data indicates that 41% of variable CTCF binding is linked to differential DNA methylation, concentrated at two critical positions within the CTCF recognition sequence. Unexpectedly, CTCF binding patterns were markedly different in normal versus immortal cells, with the latter showing widespread disruption of CTCF binding associated with increased methylation. Strikingly, this disruption is accompanied by up-regulation of CTCF expression, with the result that both normal and immortal cells maintain the same average number of CTCF occupancy sites genome-wide. These results reveal a tight linkage between DNA methylation and the global occupancy patterns of a major sequence-specific regulatory factor.
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Affiliation(s)
- Hao Wang
- Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA
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27
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Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, Sandstrom R, Bates D, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Harding L, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA. The accessible chromatin landscape of the human genome. Nature 2012; 489:75-82. [PMID: 22955617 PMCID: PMC3721348 DOI: 10.1038/nature11232] [Citation(s) in RCA: 1898] [Impact Index Per Article: 158.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2011] [Accepted: 05/15/2012] [Indexed: 02/07/2023]
Abstract
DNase I hypersensitive sites (DHSs) are markers of regulatory DNA and have underpinned the discovery of all classes of cis-regulatory elements including enhancers, promoters, insulators, silencers and locus control regions. Here we present the first extensive map of human DHSs identified through genome-wide profiling in 125 diverse cell and tissue types. We identify ∼2.9 million DHSs that encompass virtually all known experimentally validated cis-regulatory sequences and expose a vast trove of novel elements, most with highly cell-selective regulation. Annotating these elements using ENCODE data reveals novel relationships between chromatin accessibility, transcription, DNA methylation and regulatory factor occupancy patterns. We connect ∼580,000 distal DHSs with their target promoters, revealing systematic pairing of different classes of distal DHSs and specific promoter types. Patterning of chromatin accessibility at many regulatory regions is organized with dozens to hundreds of co-activated elements, and the transcellular DNase I sensitivity pattern at a given region can predict cell-type-specific functional behaviours. The DHS landscape shows signatures of recent functional evolutionary constraint. However, the DHS compartment in pluripotent and immortalized cells exhibits higher mutation rates than that in highly differentiated cells, exposing an unexpected link between chromatin accessibility, proliferative potential and patterns of human variation.
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Affiliation(s)
- Robert E. Thurman
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Eric Rynes
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Richard Humbert
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Jeff Vierstra
- Department of Genome Sciences, University of Washington, Seattle, WA
| | | | - Eric Haugen
- Department of Genome Sciences, University of Washington, Seattle, WA
| | | | | | - Hao Wang
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Benjamin Vernot
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Kavita Garg
- Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA
| | - Richard Sandstrom
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Daniel Bates
- Department of Genome Sciences, University of Washington, Seattle, WA
| | | | - Morgan Diegel
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Douglas Dunn
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Abigail K. Ebersol
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Tristan Frum
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Erika Giste
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Lisa Harding
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Audra K. Johnson
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Ericka M. Johnson
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Tanya Kutyavin
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Bryan Lajoie
- Program in Gene Function, University of Massachusetts Medical School, Worcester, MA
| | - Bum-Kyu Lee
- Institute for Cellular and Molecular Biology, University of Texas, Austin, TX
| | - Kristen Lee
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Darin London
- Institute for Genome Sciences and Policy, Duke University, Durham, NC
| | - Dimitra Lotakis
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Shane Neph
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Fidencio Neri
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Eric D. Nguyen
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Alex P. Reynolds
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Vaughn Roach
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Alexias Safi
- Institute for Genome Sciences and Policy, Duke University, Durham, NC
| | - Minerva E. Sanchez
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Amartya Sanyal
- Program in Gene Function, University of Massachusetts Medical School, Worcester, MA
| | - Anthony Shafer
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Jeremy M. Simon
- Department of Biology, University of North Carolina, Chapel Hill, NC
| | - Lingyun Song
- Institute for Genome Sciences and Policy, Duke University, Durham, NC
| | - Shinny Vong
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Molly Weaver
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Zhancheng Zhang
- Department of Biology, University of North Carolina, Chapel Hill, NC
| | - Zhuzhu Zhang
- Department of Biology, University of North Carolina, Chapel Hill, NC
| | - Boris Lenhard
- Bergen Center for Computational Science, University of Bergen, Bergen, Norway
| | - Muneesh Tewari
- Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA
| | - Michael O. Dorschner
- Dept. of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA
| | - R. Scott Hansen
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Patrick A. Navas
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | | | - Vishwanath R. Iyer
- Institute for Cellular and Molecular Biology, University of Texas, Austin, TX
| | - Jason D. Lieb
- Department of Biology, University of North Carolina, Chapel Hill, NC
| | - Shamil R. Sunyaev
- Dept. of Medicine, Division of Genetics, Brigham & Women’s Hospital and Harvard Medical School, Boston, MA
| | - Joshua M. Akey
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Peter J. Sabo
- Department of Genome Sciences, University of Washington, Seattle, WA
| | - Rajinder Kaul
- Department of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA
| | - Terrence S. Furey
- Department of Biology, University of North Carolina, Chapel Hill, NC
| | - Job Dekker
- Program in Gene Function, University of Massachusetts Medical School, Worcester, MA
| | | | - John A. Stamatoyannopoulos
- Department of Genome Sciences, University of Washington, Seattle, WA
- Department of Medicine, Division of Oncology, University of Washington, Seattle, WA
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28
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Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender M, Groudine M, Kaul R, Stamatoyannopoulos JA. An expansive human regulatory lexicon encoded in transcription factor footprints. Nature 2012; 489:83-90. [PMID: 22955618 PMCID: PMC3736582 DOI: 10.1038/nature11212] [Citation(s) in RCA: 566] [Impact Index Per Article: 47.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2011] [Accepted: 05/10/2012] [Indexed: 01/04/2023]
Abstract
Regulatory factor binding to genomic DNA protects the underlying sequence from cleavage by DNase I, leaving nucleotide-resolution footprints. Using genomic DNase I footprinting across 41 diverse cell and tissue types, we detected 45 million transcription factor occupancy events within regulatory regions, representing differential binding to 8.4 million distinct short sequence elements. Here we show that this small genomic sequence compartment, roughly twice the size of the exome, encodes an expansive repertoire of conserved recognition sequences for DNA-binding proteins that nearly doubles the size of the human cis-regulatory lexicon. We find that genetic variants affecting allelic chromatin states are concentrated in footprints, and that these elements are preferentially sheltered from DNA methylation. High-resolution DNase I cleavage patterns mirror nucleotide-level evolutionary conservation and track the crystallographic topography of protein-DNA interfaces, indicating that transcription factor structure has been evolutionarily imprinted on the human genome sequence. We identify a stereotyped 50-base-pair footprint that precisely defines the site of transcript origination within thousands of human promoters. Finally, we describe a large collection of novel regulatory factor recognition motifs that are highly conserved in both sequence and function, and exhibit cell-selective occupancy patterns that closely parallel major regulators of development, differentiation and pluripotency.
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Affiliation(s)
- Shane Neph
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Jeff Vierstra
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | | | - Alex P. Reynolds
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Eric Haugen
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Benjamin Vernot
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Robert E. Thurman
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Richard Sandstrom
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Audra K. Johnson
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Matthew T. Maurano
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Richard Humbert
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Eric Rynes
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Hao Wang
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Shinny Vong
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Kristen Lee
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Daniel Bates
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Morgan Diegel
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Vaughn Roach
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Douglas Dunn
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Jun Neri
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Anthony Schafer
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - R. Scott Hansen
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
- Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195
| | - Tanya Kutyavin
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Erika Giste
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Molly Weaver
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Theresa Canfield
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Peter Sabo
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Miaohua Zhang
- Basic Sciences Division, Fred Hutchison Cancer Research Center, Seattle, WA 98109
| | | | - Rachel Byron
- Basic Sciences Division, Fred Hutchison Cancer Research Center, Seattle, WA 98109
| | - Michael J. MacCoss
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Joshua M. Akey
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
| | - Michael Bender
- Basic Sciences Division, Fred Hutchison Cancer Research Center, Seattle, WA 98109
| | - Mark Groudine
- Basic Sciences Division, Fred Hutchison Cancer Research Center, Seattle, WA 98109
| | - Rajinder Kaul
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
- Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA 98195
| | - John A. Stamatoyannopoulos
- Department of Genome Sciences, University of Washington, Seattle, WA 98195
- Division of Oncology, Deparment of Medicine, University of Washington, Seattle, WA 98195
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29
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Lees JP, Poireau V, Tisserand V, Garra Tico J, Grauges E, Milanes DA, Palano A, Pappagallo M, Eigen G, Stugu B, Brown DN, Kerth LT, Kolomensky YG, Lynch G, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Khan A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Kravchenko EA, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Kirkby D, Lankford AJ, Mandelkern M, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Campagnari C, Hong TM, Kovalskyi D, Richman JD, West CA, Eisner AM, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Chao DS, Cheng CH, Doll DA, Echenard B, Flood KT, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Huard Z, Meadows BT, Sokoloff MD, Sun L, Bloom PC, Ford WT, Gaz A, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Spaan B, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Bettoni D, Bozzi C, Calabrese R, Cibinetto G, Fioravanti E, Garzia I, Luppi E, Munerato M, Negrini M, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Bhuyan B, Prasad V, Lee CL, Morii M, Edwards AJ, Adametz A, Marks J, Uwer U, Lacker HM, Lueck T, Dauncey PD, Behera PK, Mallik U, Chen C, Cochran J, Meyer WT, Prell S, Rubin AE, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Roudeau P, Schune MH, Stocchi A, Wormser G, Lange DJ, Wright DM, Bingham I, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Prencipe E, Bailey D, Barlow RJ, Jackson G, Lafferty GD, Behn E, Cenci R, Hamilton B, Jawahery A, Roberts DA, Simi G, Dallapiccola C, Cowan R, Dujmic D, Sciolla G, Cheaib R, Lindemann D, Patel PM, Robertson SH, Schram M, Biassoni P, Neri N, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Nguyen X, Simard M, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Martinelli M, Raven G, Jessop CP, Knoepfel KJ, Losecco JM, Wang WF, Honscheid K, Kass R, Brau J, Frey R, Sinev NB, Strom D, Torrence E, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Akar S, Ben-Haim E, Bomben M, Bonneaud GR, Briand H, Calderini G, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Sitt S, Biasini M, Manoni E, Pacetti S, Rossi A, Angelini C, Batignani G, Bettarini S, Carpinelli M, Casarosa G, Cervelli A, Forti F, Giorgi MA, Lusiani A, Oberhof B, Paoloni E, Perez A, Rizzo G, Walsh JJ, Lopes Pegna D, Olsen J, Smith AJS, Telnov AV, Anulli F, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Bünger C, Grünberg O, Hartmann T, Leddig T, Schröder H, Voss C, Waldi R, Adye T, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Aston D, Bard DJ, Bartoldus R, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Ebert M, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim P, Kocian ML, Leith DWGS, Lewis P, Lindquist B, Luitz S, Luth V, Lynch HL, Macfarlane DB, Muller DR, Neal H, Nelson S, Perl M, Pulliam T, Ratcliff BN, Roodman A, Salnikov AA, Schindler RH, Snyder A, Su D, Sullivan MK, Va'vra J, Wagner AP, Weaver M, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Young CC, Ziegler V, Park W, Purohit MV, White RM, Wilson JR, Randle-Conde A, Sekula SJ, Bellis M, Benitez JF, Burchat PR, Miyashita TS, Alam MS, Ernst JA, Gorodeisky R, Guttman N, Peimer DR, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Lanceri L, Vitale L, Martinez-Vidal F, Oyanguren A, Ahmed H, Albert J, Banerjee S, Bernlochner FU, Choi HHF, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Tasneem N, Gershon TJ, Harrison PF, Latham TE, Puccio EMT, Band HR, Dasu S, Pan Y, Prepost R, Wu SL. Search for low-mass dark-sector Higgs bosons. Phys Rev Lett 2012; 108:211801. [PMID: 23003239 DOI: 10.1103/physrevlett.108.211801] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2012] [Indexed: 06/01/2023]
Abstract
Recent astrophysical and terrestrial experiments have motivated the proposal of a dark sector with GeV-scale gauge boson force carriers and new Higgs bosons. We present a search for a dark Higgs boson using 516 fb(-1) of data collected with the BABAR detector. We do not observe a significant signal and we set 90% confidence level upper limits on the product of the standard model-dark-sector mixing angle and the dark-sector coupling constant.
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Affiliation(s)
- J P Lees
- Laboratoire d'Annecy-le-Vieux de Physique des Particules (LAPP), Université de Savoie, CNRS/IN2P3, Annecy-Le-Vieux, France
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Ganis JJ, Hsia N, Trompouki E, de Jong JLO, DiBiase A, Lambert JS, Jia Z, Sabo PJ, Weaver M, Sandstrom R, Stamatoyannopoulos JA, Zhou Y, Zon LI. Zebrafish globin switching occurs in two developmental stages and is controlled by the LCR. Dev Biol 2012; 366:185-94. [PMID: 22537494 DOI: 10.1016/j.ydbio.2012.03.021] [Citation(s) in RCA: 106] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2011] [Revised: 02/20/2012] [Accepted: 03/19/2012] [Indexed: 02/02/2023]
Abstract
Globin gene switching is a complex, highly regulated process allowing expression of distinct globin genes at specific developmental stages. Here, for the first time, we have characterized all of the zebrafish globins based on the completed genomic sequence. Two distinct chromosomal loci, termed major (chromosome 3) and minor (chromosome 12), harbor the globin genes containing α/β pairs in a 5'-3' to 3'-5' orientation. Both these loci share synteny with the mammalian α-globin locus. Zebrafish globin expression was assayed during development and demonstrated two globin switches, similar to human development. A conserved regulatory element, the locus control region (LCR), was revealed by analyzing DNase I hypersensitive sites, H3K4 trimethylation marks and GATA1 binding sites. Surprisingly, the position of these sites with relation to the globin genes is evolutionarily conserved, despite a lack of overall sequence conservation. Motifs within the zebrafish LCR include CACCC, GATA, and NFE2 sites, suggesting functional interactions with known transcription factors but not the same LCR architecture. Functional homology to the mammalian α-LCR MCS-R2 region was confirmed by robust and specific reporter expression in erythrocytes of transgenic zebrafish. Our studies provide a comprehensive characterization of the zebrafish globin loci and clarify the regulation of globin switching.
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Affiliation(s)
- Jared J Ganis
- Stem Cell Program and Division of Hematology/Oncology, Children's Hospital and Dana Farber Cancer Institute, and Harvard Stem Cell Institute, Harvard Medical School, 1 Blackfan Cir., Karp 7, Boston, MA 02115, USA.
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Lees JP, Poireau V, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Milanes DA, Palano A, Pappagallo M, Eigen G, Stugu B, Brown DN, Kerth LT, Kolomensky YG, Lynch G, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Khan A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Kravchenko EA, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Kirkby D, Lankford AJ, Mandelkern M, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Campagnari C, Hong TM, Kovalskyi D, Richman JD, West CA, Eisner AM, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Cheng CH, Doll DA, Echenard B, Flood KT, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Huard Z, Meadows BT, Sokoloff MD, Sun L, Bloom PC, Ford WT, Gaz A, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Spaan B, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Bettoni D, Bozzi C, Calabrese R, Cibinetto G, Fioravanti E, Garzia I, Luppi E, Munerato M, Negrini M, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Bhuyan B, Prasad V, Lee CL, Morii M, Edwards AJ, Adametz A, Marks J, Uwer U, Bernlochner FU, Ebert M, Lacker HM, Lueck T, Dauncey PD, Tibbetts M, Behera PK, Mallik U, Chen C, Cochran J, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Roudeau P, Schune MH, Stocchi A, Wormser G, Lange DJ, Wright DM, Bingham I, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Prencipe E, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, Behn E, Cenci R, Hamilton B, Jawahery A, Roberts DA, Simi G, Dallapiccola C, Cowan R, Dujmic D, Sciolla G, Lindemann D, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Neri N, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Nguyen X, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Honscheid K, Kass R, Brau J, Frey R, Sinev NB, Strom D, Torrence E, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Akar S, Ben-Haim E, Bomben M, Bonneaud GR, Briand H, Calderini G, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Sitt S, Biasini M, Manoni E, Pacetti S, Rossi A, Angelini C, Batignani G, Bettarini S, Carpinelli M, Casarosa G, Cervelli A, Forti F, Giorgi MA, Lusiani A, Oberhof B, Paoloni E, Perez A, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Bünger C, Grünberg O, Hartmann T, Leddig T, Schröder H, Waldi R, Adye T, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Aston D, Bard DJ, Bartoldus R, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Lewis P, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Muller DR, Neal H, Nelson S, Ofte I, Perl M, Pulliam T, Ratcliff BN, Roodman A, Salnikov AA, Schindler RH, Snyder A, Su D, Sullivan MK, Va’vra J, Wagner AP, Weaver M, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Park W, Purohit MV, White RM, Wilson JR, Randle-Conde A, Sekula SJ, Bellis M, Benitez JF, Burchat PR, Miyashita TS, Alam MS, Ernst JA, Gorodeisky R, Guttman N, Peimer DR, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Lanceri L, Vitale L, Martinez-Vidal F, Oyanguren A, Ahmed H, Albert J, Banerjee S, Choi HHF, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Tasneem N, Gershon TJ, Harrison PF, Latham TE, Puccio EMT, Band HR, Dasu S, Pan Y, Prepost R, Wu SL. Search forCPviolation in the decayτ−→π−Ks0(≥Oπ0)ντ. Int J Clin Exp Med 2012. [DOI: 10.1103/physrevd.85.031102] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Weaver M, Petasecca M, Lerch M, Cutajar D, Jakůbek J, Pospíšil S, Rosenfeld A. Dosimetry verification in eye brachytherapy using silicon pixelated detectors. RADIAT MEAS 2011. [DOI: 10.1016/j.radmeas.2011.10.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Lees JP, Poireau V, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Milanes DA, Palano A, Pappagallo M, Eigen G, Stugu B, Brown DN, Kerth LT, Kolomensky YG, Lynch G, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, So RY, Khan A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Kravchenko EA, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Kirkby D, Lankford AJ, Mandelkern M, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Campagnari C, Hong TM, Kovalskyi D, Richman JD, West CA, Eisner AM, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Cheng CH, Doll DA, Echenard B, Flood KT, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Huard Z, Meadows BT, Sokoloff MD, Sun L, Bloom PC, Ford WT, Gaz A, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Spaan B, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Bettoni D, Bozzi C, Calabrese R, Cibinetto G, Fioravanti E, Garzia I, Luppi E, Munerato M, Negrini M, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Bhuyan B, Prasad V, Lee CL, Morii M, Edwards AJ, Adametz A, Marks J, Uwer U, Bernlochner FU, Ebert M, Lacker HM, Lueck T, Dauncey PD, Tibbetts M, Behera PK, Mallik U, Chen C, Cochran J, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Roudeau P, Schune MH, Stocchi A, Wormser G, Lange DJ, Wright DM, Bingham I, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Prencipe E, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, Behn E, Cenci R, Hamilton B, Jawahery A, Roberts DA, Simi G, Dallapiccola C, Cowan R, Dujmic D, Sciolla G, Lindemann D, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Neri N, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Nguyen X, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Honscheid K, Kass R, Brau J, Frey R, Sinev NB, Strom D, Torrence E, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Akar S, Ben-Haim E, Bomben M, Bonneaud GR, Briand H, Calderini G, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Sitt S, Biasini M, Manoni E, Pacetti S, Rossi A, Angelini C, Batignani G, Bettarini S, Carpinelli M, Casarosa G, Cervelli A, Forti F, Giorgi MA, Lusiani A, Oberhof B, Paoloni E, Perez A, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Bünger C, Grünberg O, Hartmann T, Leddig T, Schröder H, Waldi R, Adye T, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Lewis P, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Muller DR, Neal H, Nelson S, Ofte I, Perl M, Pulliam T, Ratcliff BN, Roodman A, Salnikov AA, Schindler RH, Snyder A, Su D, Sullivan MK, Va'vra J, Wagner AP, Weaver M, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Park W, Purohit MV, White RM, Wilson JR, Randle-Conde A, Sekula SJ, Bellis M, Burchat PR, Miyashita TS, Alam MS, Ernst JA, Gorodeisky R, Guttman N, Peimer DR, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Lanceri L, Vitale L, Martinez-Vidal F, Oyanguren A, Ahmed H, Albert J, Banerjee S, Choi HHF, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Tasneem N, Gershon TJ, Harrison PF, Latham TE, Puccio EMT, Band HR, Dasu S, Pan Y, Prepost R, Wu SL. Search for hadronic decays of a light Higgs boson in the radiative decay Υ→γA0. Phys Rev Lett 2011; 107:221803. [PMID: 22182022 DOI: 10.1103/physrevlett.107.221803] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2011] [Indexed: 05/31/2023]
Abstract
We search for hadronic decays of a light Higgs boson (A(0)) produced in radiative decays of an Υ(2S) or Υ(3S) meson, Υ→γA(0). The data have been recorded by the BABAR experiment at the Υ(3S) and Υ(2S) center-of-mass energies and include (121.3±1.2)×10(6) Υ(3S) and (98.3±0.9)×10(6) Υ(2S) mesons. No significant signal is observed. We set 90% confidence level upper limits on the product branching fractions B(Υ(nS)→γA(0))B(A(0)→hadrons) (n=2 or 3) that range from 1×10(-6) for an A(0) mass of 0.3 GeV/c(2) to 8×10(-5) at 7 GeV/c(2).
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Affiliation(s)
- J P Lees
- Laboratoire d'Annecy-le-Vieux de Physique des Particules (LAPP), Université de Savoie, CNRS/IN2P3,F-74941 Annecy-Le-Vieux, France
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Sanchez PDA, Lees JP, Poireau V, Prencipe E, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Hooberman B, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tanabe T, Hawkes CM, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Khan A, Randle-Conde A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Curry S, Kirkby D, Lankford AJ, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Campagnari C, Hong TM, Kovalskyi D, Richman JD, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Winstrom LO, Cheng CH, Doll DA, Echenard B, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Mancinelli G, Meadows BT, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Jasper H, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Bhuyan B, Prasad V, Lee CL, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Bernlochner FU, Ebert M, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Mallik U, Chen C, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, da Costa JF, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Perez A, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wang L, Wormser G, Lange DJ, Wright DM, Bingham I, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Anderson J, Cenci R, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Sciolla G, Zhao M, Lindemann D, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Nguyen X, Simard M, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kass R, Morris JP, Rahimi AM, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Ben-Haim E, Bonneaud GR, Briand H, Calderini G, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Prendki J, Sitt S, Biasini M, Manoni E, Rossi A, Angelini C, Batignani G, Bettarini S, Carpinelli M, Casarosa G, Cervelli A, Forti F, Giorgi MA, Lusiani A, Neri N, Paoloni E, Rizzo G, Walsh JJ, Pegna DL, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Renga F, Hartmann T, Leddig T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, de Monchenault GH, Vasseur G, Yèche C, Zito M, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Sevilla MF, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Marsiske H, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Pulliam T, Ratcliff BN, Roodman A, Salnikov AA, Santoro V, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Sun S, Suzuki K, Thompson JM, Va'vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Park W, Purohit MV, White RM, Wilson JR, Sekula SJ, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Guttman N, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Lanceri L, Vitale L, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Latham TE, Puccio EMT, Band HR, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Observation of the decay B- → D(s)((*)+) K- ℓ- ν(ℓ). Phys Rev Lett 2011; 107:041804. [PMID: 21866995 DOI: 10.1103/physrevlett.107.041804] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2010] [Indexed: 05/31/2023]
Abstract
We report the observation of the decay B- → D(s)((*)+) K- ℓ- ν(ℓ) based on 342 fb(-1) of data collected at the Υ(4S) resonance with the BABAR detector at the PEP-II e+ e- storage rings at SLAC. A simultaneous fit to three D(s)(+) decay chains is performed to extract the signal yield from measurements of the squared missing mass in the B meson decay. We observe the decay B- → D(s)((*)+) K- ℓ- ν(ℓ) with a significance greater than 5 standard deviations (including systematic uncertainties) and measure its branching fraction to be B(B- → D(s)((*)+) K- ℓ- ν(ℓ)) = [6.13(-1.03)(+1.04)(stat)±0.43(syst)±0.51(B(D(s)))]×10(-4), where the last error reflects the limited knowledge of the D(s) branching fractions.
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Affiliation(s)
- P del Amo Sanchez
- Laboratoire d'Annecy-le-Vieux de Physique des Particules (LAPP), Université de Savoie, CNRS/IN2P3, F-74941 Annecy-Le-Vieux, France
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del Amo Sanchez P, Lees JP, Poireau V, Prencipe E, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Milanes DA, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Brown DN, Chistiakova MV, Jensen F, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Khan A, Randle-Conde A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Kravchenko EA, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Curry S, Kirkby D, Lankford AJ, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Campagnari C, Hong TM, Kovalskyi D, Richman JD, West C, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Winstrom LO, Cheng CH, Doll DA, Echenard B, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Mancinelli G, Meadows BT, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Jasper H, Karbach TM, Petzold A, Spaan B, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Garzia I, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Bhuyan B, Prasad V, Lee CL, Morii M, Adametz A, Marks J, Uwer U, Bernlochner FU, Ebert M, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Mallik U, Chen C, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, Firmino da Costa J, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Perez A, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wang L, Wormser G, Lange DJ, Wright DM, Bingham I, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, Anderson J, Cenci R, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Sciolla G, Zhao M, Lindemann D, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Nguyen X, Simard M, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kass R, Morris JP, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Ben-Haim E, Bonneaud GR, Briand H, Calderini G, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Prendki J, Sitt S, Biasini M, Manoni E, Rossi A, Angelini C, Batignani G, Bettarini S, Carpinelli M, Casarosa G, Cervelli A, Forti F, Giorgi MA, Lusiani A, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Renga F, Hartmann T, Leddig T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Zito M, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Marsiske H, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Pulliam T, Ratcliff BN, Roodman A, Salnikov AA, Santoro V, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Sun S, Suzuki K, Thompson JM, Va'vra J, Wagner AP, Weaver M, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Park W, Purohit MV, White RM, Wilson JR, Sekula SJ, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Guttman N, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Lanceri L, Vitale L, Lopez-March N, Martinez-Vidal F, Oyanguren A, Albert J, Banerjee S, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Lindsay C, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Latham TE, Puccio EMT, Band HR, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Search for production of invisible final states in single-photon decays of Υ(1S). Phys Rev Lett 2011; 107:021804. [PMID: 21797597 DOI: 10.1103/physrevlett.107.021804] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2010] [Indexed: 05/31/2023]
Abstract
We search for single-photon decays of the Υ(1S) resonance, Υ → γ + invisible, where the invisible state is either a particle of definite mass, such as a light Higgs boson A⁰, or a pair of dark matter particles, χχ. Both A⁰ and χ are assumed to have zero spin. We tag Υ(1S) decays with a dipion transition Υ(2S) → π⁺π⁻Υ(1S) and look for events with a single energetic photon and significant missing energy. We find no evidence for such processes in the mass range m(A⁰) ≤ 9.2 GeV and m(χ) ≤ 4.5 GeV in the sample of 98 × 10⁶ Υ(2S) decays collected with the BABAR detector and set stringent limits on new physics models that contain light dark matter states.
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Affiliation(s)
- P del Amo Sanchez
- Laboratoire d'Annecy-le-Vieux de Physique des Particules (LAPP), Université de Savoie, CNRS/IN2P3, F-74941 Annecy-Le-Vieux, France
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Mallma P, Carcamo C, Valderrama M, Chiappe M, La Rosa S, Garcia P, Weaver M, Holmes K, Terris-Prestholt F, Peeling R. P1-S6.36 Cost-effectiveness of rapid tests to improve access to syphilis prevention among pregnant women in Peru. Br J Vener Dis 2011. [DOI: 10.1136/sextrans-2011-050108.260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Doering D, Chuang YD, Andresen N, Chow K, Contarato D, Cummings C, Domning E, Joseph J, Pepper JS, Smith B, Zizka G, Ford C, Lee WS, Weaver M, Patthey L, Weizeorick J, Hussain Z, Denes P. Development of a compact fast CCD camera and resonant soft x-ray scattering endstation for time-resolved pump-probe experiments. Rev Sci Instrum 2011; 82:073303. [PMID: 21806178 DOI: 10.1063/1.3609862] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The designs of a compact, fast CCD (cFCCD) camera, together with a resonant soft x-ray scattering endstation, are presented. The cFCCD camera consists of a highly parallel, custom, thick, high-resistivity CCD, readout by a custom 16-channel application specific integrated circuit to reach the maximum readout rate of 200 frames per second. The camera is mounted on a virtual-axis flip stage inside the RSXS chamber. When this flip stage is coupled to a differentially pumped rotary seal, the detector assembly can rotate about 100°/360° in the vertical/horizontal scattering planes. With a six-degrees-of-freedom cryogenic sample goniometer, this endstation has the capability to detect the superlattice reflections from the electronic orderings showing up in the lower hemisphere. The complete system has been tested at the Advanced Light Source, Lawrence Berkeley National Laboratory, and has been used in multiple experiments at the Linac Coherent Light Source, SLAC National Accelerator Laboratory.
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Affiliation(s)
- D Doering
- Engineering Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, California 94720, USA.
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Gallo M, Macaluso M, Warner L, Fleenor M, Hook E, Brill I, Weaver M. P1-S5.29 Relationship between incident bacterial vaginosis, gonorrhoea and chlamydial infection among women attending a sexually transmitted disease clinic. Br J Vener Dis 2011. [DOI: 10.1136/sextrans-2011-050108.207] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Messer B, Weaver M. Anonymity must remain an option for reporters of critical incidents. Br J Anaesth 2011; 106:147-8; author reply 148. [DOI: 10.1093/bja/aeq354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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del Amo Sanchez P, Lees JP, Poireau V, Prencipe E, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Hooberman B, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tanabe T, Hawkes CM, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Khan A, Randle-Conde A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Curry S, Kirkby D, Lankford AJ, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Campagnari C, Hong TM, Kovalskyi D, Richman JD, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Winstrom LO, Cheng CH, Doll DA, Echenard B, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Mancinelli G, Meadows BT, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Jasper H, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Bhuyan B, Prasad V, Lee CL, Morii M, Adametz A, Marks J, Uwer U, Bernlochner FU, Ebert M, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Mallik U, Chen C, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, Firmino da Costa J, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Perez A, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wang L, Wormser G, Lange DJ, Wright DM, Bingham I, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Anderson J, Cenci R, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Sciolla G, Zhao M, Lindemann D, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Nguyen X, Simard M, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kass R, Morris JP, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Ben-Haim E, Bonneaud GR, Briand H, Calderini G, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Prendki J, Sitt S, Biasini M, Manoni E, Rossi A, Angelini C, Batignani G, Bettarini S, Carpinelli M, Casarosa G, Cervelli A, Forti F, Giorgi MA, Lusiani A, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Renga F, Hartmann T, Leddig T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Zito M, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Marsiske H, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Pulliam T, Ratcliff BN, Roodman A, Salnikov AA, Santoro V, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Sun S, Suzuki K, Thompson JM, Va'vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Park W, Purohit MV, White RM, Wilson JR, Sekula SJ, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Guttman N, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Lanceri L, Vitale L, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Latham TE, Puccio EMT, Band HR, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Search for f(J)(2220) in radiative J/ψ decays. Phys Rev Lett 2010; 105:172001. [PMID: 21231035 DOI: 10.1103/physrevlett.105.172001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2010] [Indexed: 05/30/2023]
Abstract
We present a search for f(J)(2220) production in radiative J/ψ→γf(J)(2220) decays using 460 fb⁻¹ of data collected with the BABAR detector at the SLAC PEP-II e(+)e⁻ collider. The f(J)(2220) is searched for in the decays to K(+)K⁻ and K(S)⁰K(S)⁰. No evidence of this resonance is observed, and 90% confidence level upper limits on the product of the branching fractions for J/ψ→γf(J)(2220) and f(J)(2220)→K(+)K⁻(K(S)⁰K(S)⁰) as a function of spin and helicity are set at the level of 10⁻⁵, below the central values reported by the Mark III experiment.
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Conover CJ, Ettner SL, Weaver M, Flynn PM, Porto JV. Economic evaluations of HIV treatment and health research with people diagnosed with HIV infection and co-occurring mental health and substance use disorders. AIDS Care 2010; 16 Suppl 1:S121-36. [PMID: 15736825 DOI: 10.1080/09540120412331315268] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
This paper describes the research challenges involved in measuring costs in economic evaluations of patients who are coping simultaneously with HIV/AIDS and co-occurring mental health and substance abuse disorders-especially in multi-site studies. We describe the general issues that arise in measuring costs for this population and suggest some operational solutions for their resolution, drawing from our experience in a recent multi-site health services research study focused on this population. We show that while reliance on patient self-report data may be unavoidable to provide a common denominator in multi-site studies, there are also some practical ways of improving the accuracy of such data and the cost estimates that result from them. We also provide readers with a means for securing the data collection instruments developed for the cost component of this study in the hope that these may serve as templates for researchers doing similar work.
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Affiliation(s)
- C J Conover
- Center for Health Policy, Law and Management, Terry Sanford Institute of Public Policy, Duke University, Durham, NC 27708, USA.
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del Amo Sanchez P, Lees JP, Poireau V, Prencipe E, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Hooberman B, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tanabe T, Hawkes CM, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Khan A, Randle-Conde A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Curry S, Kirkby D, Lankford AJ, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Campagnari C, Hong TM, Kovalskyi D, Richman JD, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Winstrom LO, Cheng CH, Doll DA, Echenard B, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Mancinelli G, Meadows BT, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Bhuyan B, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Bernlochner FU, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Mallik U, Chen C, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, Firmino da Costa J, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Perez A, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wang L, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Anderson J, Cenci R, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Sciolla G, Zhao M, Lindemann D, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Zhao HW, Nguyen X, Simard M, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kass R, Morris JP, Rahimi AM, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Ben-Haim E, Bonneaud GR, Briand H, Calderini G, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Prendki J, Sitt S, Biasini M, Manoni E, Angelini C, Batignani G, Bettarini S, Carpinelli M, Casarosa G, Cervelli A, Forti F, Giorgi MA, Lusiani A, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Renga F, Ebert M, Hartmann T, Leddig T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Zito M, Aitchison IJR, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Marsiske H, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Pulliam T, Ratcliff BN, Roodman A, Salnikov AA, Santoro V, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Sun S, Suzuki K, Thompson JM, Va'vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Park W, Purohit MV, White RM, Wilson JR, Sekula SJ, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Guttman N, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Lanceri L, Vitale L, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Puccio EMT, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Evidence for direct CP violation in the measurement of the Cabbibo-Kobayashi-Maskawa angle γ with B∓ → D(*)K(*)∓ decays. Phys Rev Lett 2010; 105:121801. [PMID: 20867628 DOI: 10.1103/physrevlett.105.121801] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2010] [Indexed: 05/29/2023]
Abstract
We report the measurement of the Cabibbo-Kobayashi-Maskawa CP-violating angle γ through a Dalitz plot analysis of neutral D-meson decays to K(S)(0) π+ π- and K(S)(0) K+ K- produced in the processes B∓ → DK∓, B∓ D* K∓ with D* → Dπ(0), Dγ, and B∓ → DK*∓ with K*∓ → K(S)(0) π∓, using 468 million BB pairs collected by the BABAR detector at the PEP-II asymmetric-energy e+ e- collider at SLAC. We measure γ = (68 ± 14 ± 4 ± 3)° (modulo 180°), where the first error is statistical, the second is the experimental systematic uncertainty, and the third reflects the uncertainty in the description of the neutral D decay amplitudes. This result is inconsistent with γ = 0 (no direct CP violation) with a significance of 3.5 standard deviations.
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Affiliation(s)
- P del Amo Sanchez
- Laboratoire d'Annecy-le-Vieux de Physique des Particules (LAPP), Université de Savoie, CNRS/IN2P3, F-74941 Annecy-Le-Vieux, France
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del Amo Sanchez P, Lees JP, Poireau V, Prencipe E, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Hooberman B, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tanabe T, Hawkes CM, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Khan A, Randle-Conde A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Curry S, Kirkby D, Lankford AJ, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Campagnari C, Hong TM, Kovalskyi D, Richman JD, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Winstrom LO, Cheng CH, Doll DA, Echenard B, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Mancinelli G, Meadows BT, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Bhuyan B, Lee CL, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Bernlochner FU, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Mallik U, Chen C, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, Firmino da Costa J, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Perez A, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wang L, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Anderson J, Cenci R, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Sciolla G, Zhao M, Lindemann D, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Zhao HW, Nguyen X, Simard M, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kass R, Morris JP, Rahimi AM, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Ben-Haim E, Bonneaud GR, Briand H, Calderini G, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Prendki J, Sitt S, Biasini M, Manoni E, Angelini C, Batignani G, Bettarini S, Carpinelli M, Casarosa G, Cervelli A, Forti F, Giorgi MA, Lusiani A, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Renga F, Ebert M, Hartmann T, Leddig T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Zito M, Aitchison IJR, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Marsiske H, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Pulliam T, Ratcliff BN, Roodman A, Salnikov AA, Santoro V, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Sun S, Suzuki K, Thompson JM, Va'vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Park W, Purohit MV, White RM, Wilson JR, Sekula SJ, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Guttman N, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Lanceri L, Vitale L, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Puccio EMT, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Measurement of D0-D0 mixing parameters using D0 → K(S)(0)π+ π- and D0 → K(S)(0)K+ K- decays. Phys Rev Lett 2010; 105:081803. [PMID: 20868092 DOI: 10.1103/physrevlett.105.081803] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2010] [Indexed: 05/29/2023]
Abstract
We report a direct measurement of D0-D0 mixing parameters through a time-dependent amplitude analysis of the Dalitz plots of D(0) → K(S)(0) π+ π- and, for the first time, D0 → K(S)(0)K+ K- decays. The low-momentum pion π(s)(+) in the decay D*+ → D0 π(s)(+) identifies the flavor of the neutral D meson at its production. Using 468.5 fb(-1) of e+ e- colliding-beam data recorded near square root(s)=10.6 GeV by the BABAR detector at the PEP-II asymmetric-energy collider at SLAC, we measure the mixing parameters x = [1.6 ± 2.3(stat) ± 1.2(syst) ± 0.8(model)] × 10(-3), and y = [5.7 ± 2.0(stat) ± 1.3(syst) ± 0.7(model)] × 10(-3). These results provide the best measurement to date of x and y. The knowledge of the value of x, in particular, is crucial for understanding the origin of mixing.
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Affiliation(s)
- P del Amo Sanchez
- Laboratoire d'Annecy-le-Vieux de Physique des Particules, Université de Savoie, CNRS/IN2P3, F-74941 Annecy-Le-Vieux, France
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Aubert B, Karyotakis Y, Lees JP, Poireau V, Prencipe E, Prudent X, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tackmann K, Tanabe T, Hawkes CM, Soni N, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Fulsom BG, Hearty C, Mattison TS, McKenna JA, Barrett M, Khan A, Randle-Conde A, Blinov VE, Bukin AD, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Bondioli M, Curry S, Eschrich I, Kirkby D, Lankford AJ, Lund P, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Yasin Z, Sharma V, Campagnari C, Hong TM, Kovalskyi D, Mazur MA, Richman JD, Beck TW, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Wang L, Winstrom LO, Cheng CH, Doll DA, Echenard B, Fang F, Hitlin DG, Narsky I, Ongmongkolkul P, Piatenko T, Porter FC, Andreassen R, Mancinelli G, Meadows BT, Mishra K, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Wilson RJ, Feltresi E, Hauke A, Jasper H, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Nogowski R, Schubert KR, Schwierz R, Bernard D, Latour E, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Chaisanguanthum KS, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Bernlochner FU, Klose V, Lacker HM, Lueck T, Volk A, Bard DJ, Dauncey PD, Tibbetts M, Behera PK, Charles MJ, Mallik U, Cochran J, Crawley HB, Dong L, Eyges V, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, Béquilleux J, D'Orazio A, Davier M, Derkach D, Firmino da Costa J, Grosdidier G, Le Diberder F, Lepeltier V, Lutz AM, Malaescu B, Pruvot S, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Clarke CK, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Yi JI, Anderson J, Chen C, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Henderson SW, Sciolla G, Spitznagel M, Yamamoto RK, Zhao M, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Zhao HW, Simard M, Taras P, Nicholson H, De Nardo G, Lista L, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kagan H, Kass R, Morris JP, Rahimi AM, Sekula SJ, Wong QK, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Lu M, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Voci C, Del Amo Sanchez P, Ben-Haim E, Bonneaud GR, Briand H, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Perez A, Prendki J, Sitt S, Gladney L, Biasini M, Manoni E, Angelini C, Batignani G, Bettarini S, Calderini G, Carpinelli M, Cervelli A, Forti F, Giorgi MA, Lusiani A, Morganti M, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Jackson PD, Gioi LL, Mazzoni MA, Morganti S, Piredda G, Renga F, Voena C, Ebert M, Hartmann T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Esteve L, Hamel de Monchenault G, Kozanecki W, Vasseur G, Yèche C, Zito M, Allen MT, Aston D, Bartoldus R, Benitez JF, Cenci R, Coleman JP, Convery MR, Dingfelder JC, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kaminski J, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, Macfarlane DB, Marsiske H, Messner R, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Ratcliff BN, Roodman A, Salnikov AA, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Suzuki K, Swain SK, Thompson JM, Va'vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Liu H, Park W, Purohit MV, White RM, Wilson JR, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Soffer A, Spanier SM, Wogsland BJ, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Drummond BW, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Bosisio L, Cartaro C, Della Ricca G, Lanceri L, Vitale L, Azzolini V, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Bhuyan B, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Mohanty GB, Puccio EMT, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Measurements of charged current lepton universality and |Vus| using tau lepton decays to e- ν(e) ν(τ), μ- ν(μ) ν(τ), π- ν(τ), and K- ν(τ). Phys Rev Lett 2010; 105:051602. [PMID: 20867905 DOI: 10.1103/physrevlett.105.051602] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2009] [Indexed: 05/29/2023]
Abstract
Using 467 fb(-1) of e+e- annihilation data collected with the BABAR detector, we measure (B(τ- → μ- ν(μ) ν(τ)))/(B(τ- → e- ν(e) ν(τ))) =(0.9796±0.0016±0.0036), (B(τ- → π- ν(τ)))/(B(τ- → e- ν(e) ν(τ))) = (0.5945±0.0014±0.0061), and (B(τ- → K- ν(τ)))/(B(τ- → e- ν(e) ν(τ))) = (0.03882±0.00032±0.00057), where the uncertainties are statistical and systematic, respectively. From these precision τ measurements, we test the standard model assumption of μ-e and τ-μ charge current lepton universality and provide determinations of |Vus| experimentally independent of the decay of a kaon.
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Affiliation(s)
- B Aubert
- Laboratoire d'Annecy-le-Vieux de Physique des Particules (LAPP), Université de Savoie, CNRS/IN2P3, F-74941 Annecy-Le-Vieux, France
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Weaver M. Lethal injections: no healthcare professionals should be involved. West J Med 2010. [DOI: 10.1136/bmj.c2643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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del Amo Sanchez P, Lees JP, Poireau V, Prencipe E, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Hooberman B, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tanabe T, Hawkes CM, Soni N, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Khan A, Randle-Conde A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Curry S, Kirkby D, Lankford AJ, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Yasin Z, Sharma V, Campagnari C, Hong TM, Kovalskyi D, Richman JD, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Winstrom LO, Cheng CH, Doll DA, Echenard B, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Mancinelli G, Meadows BT, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Hauke A, Jasper H, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Bhuyan B, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Bernlochner FU, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Mallik U, Chen C, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, Firmino da Costa J, Grosdidier G, Le Diberder F, Lutz AM, Malaescu B, Perez A, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wang L, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Coleman JP, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Anderson J, Cenci R, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Sciolla G, Yamamoto RK, Zhao M, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Zhao HW, Nguyen X, Simard M, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kass R, Morris JP, Rahimi AM, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Feltresi E, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Ben-Haim E, Bonneaud GR, Briand H, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Prendki J, Sitt S, Biasini M, Manoni E, Angelini C, Batignani G, Bettarini S, Calderini G, Carpinelli M, Cervelli A, Forti F, Giorgi MA, Lusiani A, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Li Gioi L, Mazzoni MA, Piredda G, Renga F, Ebert M, Hartmann T, Leddig T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Zito M, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cartaro C, Convery MR, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Marsiske H, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Ratcliff BN, Roodman A, Salnikov AA, Santoro V, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Suzuki K, Thompson JM, Va'vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Park W, Purohit MV, White RM, Wilson JR, Sekula SJ, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Guttman N, Soffer A, Lund P, Spanier SM, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Della Ricca G, Lanceri L, Vitale L, Azzolini V, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Mohanty GB, Puccio EMT, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Pierini M, Prepost R, Vuosalo CO, Wu SL. Test of lepton universality in Υ(1S) decays at BABAR. Phys Rev Lett 2010; 104:191801. [PMID: 20866959 DOI: 10.1103/physrevlett.104.191801] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2010] [Indexed: 05/29/2023]
Abstract
The ratio R(τμ)(Υ(1S))=Γ(Υ(1S)→τ+ τ-)/Γ(Υ(1S)→μ+ μ-) is measured using a sample of (121.8±1.2)×10(6)Υ(3S) events recorded by the BABAR detector. This measurement is intended as a test of lepton universality and as a search for a possible light pseudoscalar Higgs boson. In the standard model (SM) this ratio is expected to be close to 1. Any significant deviations would violate lepton universality and could be introduced by the coupling to a light pseudoscalar Higgs boson. The analysis studies the decays Υ(3S)→Υ(1S)π+ π-, Υ(1S)→l+ l-, where l=μ, τ. The result, R(τμ)(Υ(1S))=1.005±0.013(stat)±0.022(syst), shows no deviation from the expected SM value, while improving the precision with respect to previous measurements.
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Affiliation(s)
- P del Amo Sanchez
- Laboratoire d'Annecy-le-Vieux de Physique des Particules, Université de Savoie, CNRS/IN2P3, F-74941 Annecy-Le-Vieux, France
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Lees JP, Poireau V, Prencipe E, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Hooberman B, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tanabe T, Hawkes CM, Soni N, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Barrett M, Khan A, Randle-Conde A, Blinov VE, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Yushkov AN, Bondioli M, Curry S, Kirkby D, Lankford AJ, Lund P, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Yasin Z, Sharma V, Campagnari C, Hong TM, Kovalskyi D, Richman JD, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Winstrom LO, Cheng CH, Doll DA, Echenard B, Hitlin DG, Ongmongkolkul P, Porter FC, Rakitin AY, Andreassen R, Dubrovin MS, Mancinelli G, Meadows BT, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Feltresi E, Hauke A, Jasper H, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Nicolaci M, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Bhuyan B, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Bernlochner FU, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Charles MJ, Mallik U, Chen C, Cochran J, Crawley HB, Dong L, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, Firmino da Costa J, Grosdidier G, Le Diberder F, Lepeltier V, Lutz AM, Malaescu B, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wang L, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Anderson J, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Henderson SW, Sciolla G, Spitznagel M, Yamamoto RK, Zhao M, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Zhao HW, Nguyen X, Simard M, Taras P, De Nardo G, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kass R, Morris JP, Rahimi AM, Sekula SJ, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Lu M, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, del Amo Sanchez P, Ben-Haim E, Bonneaud GR, Briand H, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Perez A, Prendki J, Sitt S, Biasini M, Manoni E, Angelini C, Batignani G, Bettarini S, Calderini G, Carpinelli M, Cervelli A, Forti F, Giorgi MA, Lusiani A, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Jackson PD, Li Gioi L, Mazzoni MA, Piredda G, Renga F, Ebert M, Hartmann T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Hamel de Monchenault G, Vasseur G, Yèche C, Zito M, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cenci R, Coleman JP, Convery MR, Dingfelder JC, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kaminski J, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Marsiske H, Messner R, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Ratcliff BN, Roodman A, Salnikov AA, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Suzuki K, Swain SK, Thompson JM, Va'vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Liu H, Park W, Purohit MV, White RM, Wilson JR, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Guttman N, Soffer A, Spanier SM, Wogsland BJ, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Drummond BW, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Cartaro C, Della Ricca G, Lanceri L, Vitale L, Azzolini V, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Mohanty GB, Puccio EMT, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Search for charged lepton flavor violation in narrow upsilon decays. Phys Rev Lett 2010; 104:151802. [PMID: 20481982 DOI: 10.1103/physrevlett.104.151802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2010] [Indexed: 05/29/2023]
Abstract
Charged-lepton flavor-violating processes are unobservable in the standard model, but they are predicted to be enhanced in several extensions to the standard model, including supersymmetry and models with leptoquarks or compositeness. We present a search for such processes in a sample of 99x10(6)Upsilon(2S) decays and 117x10(6)Upsilon(3S) decays collected with the BABAR detector. We place upper limits on the branching fractions B(Upsilon(nS)-->e(+/-)tau(-/+)) and B(Upsilon(nS)-->mu(+/-)tau(-/+)) (n=2,3) at the 10(-6) level and use these results to place lower limits of order 1 TeV on the mass scale of charged-lepton flavor-violating effective operators.
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Affiliation(s)
- J P Lees
- Laboratoire d'Annecy-le-Vieux de Physique des Particules, Université de Savoie, CNRS/IN2P3, F-74941 Annecy-Le-Vieux, France
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Aubert B, Karyotakis Y, Lees JP, Poireau V, Prencipe E, Prudent X, Tisserand V, Tico JG, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Hooberman B, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tackmann K, Tanabe T, Hawkes CM, Soni N, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Barrett M, Khan A, Randle-Conde A, Blinov VE, Bukin AD, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Bondioli M, Curry S, Eschrich I, Kirkby D, Lankford AJ, Lund P, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Yasin Z, Sharma V, Campagnari C, Hong TM, Kovalskyi D, Mazur MA, Richman JD, Beck TW, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Winstrom LO, Cheng CH, Doll DA, Echenard B, Fang F, Hitlin DG, Narsky I, Ongmongkolkul P, Piatenko T, Porter FC, Andreassen R, Dubrovin MS, Mancinelli G, Meadows BT, Mishra K, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Feltresi E, Hauke A, Jasper H, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Schubert KR, Schwierz R, Bernard D, Latour E, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Bernlochner FU, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Charles MJ, Mallik U, Chen C, Cochran J, Crawley HB, Dong L, Eyges V, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, Davier M, Derkach D, da Costa JF, Grosdidier G, Le Diberder F, Lepeltier V, Lutz AM, Malaescu B, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Clarke CK, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Yi JI, Anderson J, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Henderson SW, Sciolla G, Spitznagel M, Yamamoto RK, Zhao M, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Zhao HW, Nguyen X, Simard M, Taras P, Nicholson H, De Nardo G, Lista L, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, LoSecco JM, Wang WF, Corwin LA, Honscheid K, Kagan H, Kass R, Morris JP, Rahimi AM, Sekula SJ, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Lu M, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Voci C, del Amo Sanchez P, Ben-Haim E, Bonneaud GR, Briand H, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Perez A, Prendki J, Sitt S, Gladney L, Biasini M, Manoni E, Angelini C, Batignani G, Bettarini S, Calderini G, Carpinelli M, Cervelli A, Forti F, Giorgi MA, Lusiani A, Morganti M, Neri N, Paoloni E, Rizzo G, Walsh JJ, Pegna DL, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Jackson PD, Gioi LL, Mazzoni MA, Morganti S, Piredda G, Renga F, Voena C, Ebert M, Hartmann T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Esteve L, de Monchenault GH, Kozanecki W, Vasseur G, Yèche C, Zito M, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cenci R, Coleman JP, Convery MR, Dingfelder JC, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Sevilla MF, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kaminski J, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, MacFarlane DB, Marsiske H, Messner R, Muller DR, Neal H, Nelson S, O’Grady CP, Ofte I, Perl M, Ratcliff BN, Roodman A, Salnikov AA, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Suzuki K, Swain SK, Thompson JM, Va’vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Liu H, Park W, Purohit MV, White RM, Wilson JR, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Soffer A, Spanier SM, Wogsland BJ, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Drummond BW, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Bosisio L, Cartaro C, Della Ricca G, Lanceri L, Vitale L, Azzolini V, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Bhuyan B, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Mohanty GB, Puccio EMT, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Observation of inclusiveD*±production in the decay ofΥ(1S). Int J Clin Exp Med 2010. [DOI: 10.1103/physrevd.81.011102] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Aubert B, Karyotakis Y, Lees JP, Poireau V, Prencipe E, Prudent X, Tisserand V, Garra Tico J, Grauges E, Martinelli M, Palano A, Pappagallo M, Eigen G, Stugu B, Sun L, Battaglia M, Brown DN, Hooberman B, Kerth LT, Kolomensky YG, Lynch G, Osipenkov IL, Tackmann K, Tanabe T, Hawkes CM, Soni N, Watson AT, Koch H, Schroeder T, Asgeirsson DJ, Hearty C, Mattison TS, McKenna JA, Barrett M, Khan A, Randle-Conde A, Blinov VE, Bukin AD, Buzykaev AR, Druzhinin VP, Golubev VB, Onuchin AP, Serednyakov SI, Skovpen YI, Solodov EP, Todyshev KY, Bondioli M, Curry S, Eschrich I, Kirkby D, Lankford AJ, Lund P, Mandelkern M, Martin EC, Stoker DP, Atmacan H, Gary JW, Liu F, Long O, Vitug GM, Yasin Z, Sharma V, Campagnari C, Hong TM, Kovalskyi D, Mazur MA, Richman JD, Beck TW, Eisner AM, Heusch CA, Kroseberg J, Lockman WS, Martinez AJ, Schalk T, Schumm BA, Seiden A, Wang L, Winstrom LO, Cheng CH, Doll DA, Echenard B, Fang F, Hitlin DG, Narsky I, Ongmongkolkul P, Piatenko T, Porter FC, Andreassen R, Mancinelli G, Meadows BT, Mishra K, Sokoloff MD, Bloom PC, Ford WT, Gaz A, Hirschauer JF, Nagel M, Nauenberg U, Smith JG, Wagner SR, Ayad R, Toki WH, Feltresi E, Hauke A, Jasper H, Karbach TM, Merkel J, Petzold A, Spaan B, Wacker K, Kobel MJ, Nogowski R, Schubert KR, Schwierz R, Bernard D, Latour E, Verderi M, Clark PJ, Playfer S, Watson JE, Andreotti M, Bettoni D, Bozzi C, Calabrese R, Cecchi A, Cibinetto G, Fioravanti E, Franchini P, Luppi E, Munerato M, Negrini M, Petrella A, Piemontese L, Santoro V, Baldini-Ferroli R, Calcaterra A, de Sangro R, Finocchiaro G, Pacetti S, Patteri P, Peruzzi IM, Piccolo M, Rama M, Zallo A, Contri R, Guido E, Lo Vetere M, Monge MR, Passaggio S, Patrignani C, Robutti E, Tosi S, Morii M, Adametz A, Marks J, Schenk S, Uwer U, Bernlochner FU, Lacker HM, Lueck T, Volk A, Dauncey PD, Tibbetts M, Behera PK, Charles MJ, Mallik U, Cochran J, Crawley HB, Dong L, Eyges V, Meyer WT, Prell S, Rosenberg EI, Rubin AE, Gao YY, Gritsan AV, Guo ZJ, Arnaud N, D'Orazio A, Davier M, Derkach D, Firmino da Costa J, Grosdidier G, Le Diberder F, Lepeltier V, Lutz AM, Malaescu B, Roudeau P, Schune MH, Serrano J, Sordini V, Stocchi A, Wormser G, Lange DJ, Wright DM, Bingham I, Burke JP, Chavez CA, Fry JR, Gabathuler E, Gamet R, Hutchcroft DE, Payne DJ, Touramanis C, Bevan AJ, Clarke CK, Di Lodovico F, Sacco R, Sigamani M, Cowan G, Paramesvaran S, Wren AC, Brown DN, Davis CL, Denig AG, Fritsch M, Gradl W, Hafner A, Alwyn KE, Bailey D, Barlow RJ, Jackson G, Lafferty GD, West TJ, Yi JI, Anderson J, Chen C, Jawahery A, Roberts DA, Simi G, Tuggle JM, Dallapiccola C, Salvati E, Cowan R, Dujmic D, Fisher PH, Henderson SW, Sciolla G, Spitznagel M, Yamamoto RK, Zhao M, Patel PM, Robertson SH, Schram M, Biassoni P, Lazzaro A, Lombardo V, Palombo F, Stracka S, Cremaldi L, Godang R, Kroeger R, Sonnek P, Summers DJ, Zhao HW, Nguyen X, Simard M, Taras P, Nicholson H, De Nardo G, Lista L, Monorchio D, Onorato G, Sciacca C, Raven G, Snoek HL, Jessop CP, Knoepfel KJ, Losecco JM, Wang WF, Corwin LA, Honscheid K, Kagan H, Kass R, Morris JP, Rahimi AM, Sekula SJ, Blount NL, Brau J, Frey R, Igonkina O, Kolb JA, Lu M, Rahmat R, Sinev NB, Strom D, Strube J, Torrence E, Castelli G, Gagliardi N, Margoni M, Morandin M, Posocco M, Rotondo M, Simonetto F, Stroili R, Voci C, Del Amo Sanchez P, Ben-Haim E, Bonneaud GR, Briand H, Chauveau J, Hamon O, Leruste P, Marchiori G, Ocariz J, Perez A, Prendki J, Sitt S, Gladney L, Biasini M, Manoni E, Angelini C, Batignani G, Bettarini S, Calderini G, Carpinelli M, Cervelli A, Forti F, Giorgi MA, Lusiani A, Morganti M, Neri N, Paoloni E, Rizzo G, Walsh JJ, Lopes Pegna D, Lu C, Olsen J, Smith AJS, Telnov AV, Anulli F, Baracchini E, Cavoto G, Faccini R, Ferrarotto F, Ferroni F, Gaspero M, Jackson PD, Li Gioi L, Mazzoni MA, Morganti S, Piredda G, Renga F, Voena C, Ebert M, Hartmann T, Schröder H, Waldi R, Adye T, Franek B, Olaiya EO, Wilson FF, Emery S, Esteve L, Hamel de Monchenault G, Kozanecki W, Vasseur G, Yèche C, Zito M, Allen MT, Aston D, Bard DJ, Bartoldus R, Benitez JF, Cenci R, Coleman JP, Convery MR, Dingfelder JC, Dorfan J, Dubois-Felsmann GP, Dunwoodie W, Field RC, Franco Sevilla M, Fulsom BG, Gabareen AM, Graham MT, Grenier P, Hast C, Innes WR, Kaminski J, Kelsey MH, Kim H, Kim P, Kocian ML, Leith DWGS, Li S, Lindquist B, Luitz S, Luth V, Lynch HL, Macfarlane DB, Marsiske H, Messner R, Muller DR, Neal H, Nelson S, O'Grady CP, Ofte I, Perl M, Ratcliff BN, Roodman A, Salnikov AA, Schindler RH, Schwiening J, Snyder A, Su D, Sullivan MK, Suzuki K, Swain SK, Thompson JM, Va'vra J, Wagner AP, Weaver M, West CA, Wisniewski WJ, Wittgen M, Wright DH, Wulsin HW, Yarritu AK, Young CC, Ziegler V, Chen XR, Liu H, Park W, Purohit MV, White RM, Wilson JR, Bellis M, Burchat PR, Edwards AJ, Miyashita TS, Ahmed S, Alam MS, Ernst JA, Pan B, Saeed MA, Zain SB, Soffer A, Spanier SM, Wogsland BJ, Eckmann R, Ritchie JL, Ruland AM, Schilling CJ, Schwitters RF, Wray BC, Drummond BW, Izen JM, Lou XC, Bianchi F, Gamba D, Pelliccioni M, Bomben M, Bosisio L, Cartaro C, Della Ricca G, Lanceri L, Vitale L, Azzolini V, Lopez-March N, Martinez-Vidal F, Milanes DA, Oyanguren A, Albert J, Banerjee S, Bhuyan B, Choi HHF, Hamano K, King GJ, Kowalewski R, Lewczuk MJ, Lindsay CD, Locke CB, Nugent IM, Roney JM, Sobie RJ, Gershon TJ, Harrison PF, Ilic J, Latham TE, Mohanty GB, Puccio EMT, Band HR, Chen X, Dasu S, Flood KT, Pan Y, Prepost R, Vuosalo CO, Wu SL. Searches for Lepton flavor violation in the decays tau{+/-}-->e{+/-}gamma and tau{+/-}-->mu{+/-}gamma. Phys Rev Lett 2010; 104:021802. [PMID: 20366586 DOI: 10.1103/physrevlett.104.021802] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2009] [Indexed: 05/29/2023]
Abstract
Searches for lepton-flavor-violating decays of a tau lepton to a lighter mass lepton and a photon have been performed with the entire data set of (963+/-7)x10{6} tau decays collected by the BABAR detector near the Upsilon(4S), Upsilon(3S) and Upsilon(2S) resonances. The searches yield no evidence of signals and we set upper limits on the branching fractions of B(tau{+/-}-->e{+/-}gamma)<3.3x10{-8} and B(tau{+/-}-->mu{+/-}gamma)<4.4x10{-8} at 90% confidence level.
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Affiliation(s)
- B Aubert
- Laboratoire d'Annecy-le-Vieux de Physique des Particules (LAPP), Université de Savoie, CNRS/IN2P3, F-74941 Annecy-Le-Vieux, France
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