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Cordero T, Beagen PL, Daly ME, Monjazeb AM, Zhao X. 3D Surface Imaging in Reducing Setup Error for Prone Whole Breast Radiotherapy. Int J Radiat Oncol Biol Phys 2023; 117:e172. [PMID: 37784782 DOI: 10.1016/j.ijrobp.2023.06.1014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) For patients undergoing whole breast radiotherapy, treatment in the prone position allows for reduced dose to critical organs such as the heart and lungs. However, this treatment position comes with greater challenges in reproducibility and setup error given the unstable position. Our objective was to investigate the benefit of using 3D surface imaging to reduce daily setup errors for these patients. MATERIALS/METHODS We performed a retrospective review of consecutive breast patients receiving prone breast radiotherapy at our institution. All patients were positioned initially using setup tattoos and twice a week, the positioning was adjusted using the aid of a motion tracking system. Then, a daily kilovoltage (kV) cone beam computed tomography (CBCT) image was acquired and positioning was adjusted to setup the breast and chest wall. Shifts in each translational direction were recorded and the three-dimensional vector displacement was calculated. For each patient the average displacements on days where a motion tracking system was used were compared to days whereas motion tracking system was not used. Patients were classified into significant benefit (more than 4 mm improvement), small benefit (0-4 mm improvement) or increased error (increased shifts on days a motion tracking system was used). Patient demographics were collected including stage, BMI, weight, heigh, age, ethnicity. Comparisons were made using t-tests. RESULTS A total of 40 patients with stage T0-2N0 breast cancer were included. The median age was 64 and 60% of patients had left sided breast cancer. A total of 665 daily CBCT scans were analyzed, and the median daily vector displacement was 7.2 mm (1-21 mm). The median displacement on treatments where a motion tracking system was used (41% of treatments) was 6.1 mm versus 8.1 mm when not used (p<.0001). The use of a motion tracking system significantly reduced the occurrence of shifts more than 1 cm (12% vs. 33%, p < .0001) and 5 mm (65% vs. 83% p < .0001). For individual patients, 28% showed a significant improvement, 55% showed small improvement, 17% showed increased error. The median BMI was 27, weight was 71 kg, and neither was associated with an improvement in the use of Align RT (p > .05). However, patients in the small improvement group had a higher BMI than patients in the other two groups 29 vs. 25 (p = .01). A similar association was seen for weight (p < .05). No association was found for the benefit of a motion tracking system for height, age, stage or ethnicity. CONCLUSION The use of 3D surface imaging for breast cancer patients receiving prone whole breast radiotherapy on average significantly reduced setup errors. For patients with higher BMI there was a consistent small reduction in setup error when compared to using setup marks alone. For patients with lower BMI, caution should be exercised as there was more variation with some patients demonstrating a large benefit and other patients having an increased setup error with the use of surface imaging. Further research is needed to investigate on the optimal use of this technology.
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Affiliation(s)
- T Cordero
- University of California Los Angeles, Los Angeles, CA
| | - P L Beagen
- UC Davis Comprehensive Cancer Center, Sacramento, CA, United States
| | - M E Daly
- University of California Davis Comprehensive Cancer Center, Sacramento, CA
| | - A M Monjazeb
- University of California Davis Comprehensive Cancer Center, Sacramento, CA
| | - X Zhao
- University of California Davis Comprehensive Cancer Center, Sacramento, CA
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Ternero-Hidalgo J, Daturi M, Clet G, Bazin P, Bañares M, Portela R, Guerrero-Pérez M, Rodríguez-Mirasol J, Cordero T. A simultaneous operando FTIR & Raman study of propane ODH mechanism over V-Zr-O catalysts. Catal Today 2022. [DOI: 10.1016/j.cattod.2021.06.012] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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3
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Houhou F, Martí M, Cordero T, Aragonés V, Sáez C, Cebolla-Cornejo J, de Castro AP, Rodríguez-Concepción M, Picó B, Daròs JA. Carotenoid fortification of zucchini fruits using a viral RNA vector. Biotechnol J 2022; 17:e2100328. [PMID: 35157358 DOI: 10.1002/biot.202100328] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 01/31/2022] [Accepted: 02/11/2022] [Indexed: 11/12/2022]
Abstract
BACKGROUND Carotenoids are health-promoting metabolites in livestock and human diets. Some important crops have been genetically modified to increase their content. Although the usefulness of transgenic plants to alleviate nutritional deficiencies is obvious, their social acceptance has been controversial. RESULTS Here, we demonstrate an alternative biotechnological strategy for carotenoid fortification of edible fruits in which no transgenic DNA is involved. A viral RNA vector derived from Zucchini yellow mosaic virus (ZYMV) was modified to express a bacterial phytoene synthase (crtB), and inoculated to zucchini (Cucurbita pepo L.) leaves nurturing pollinated flowers. After the viral vector moved to the developing fruit and expressed crtB, the rind and flesh of the fruits developed yellow-orange rather than green color. Metabolite analyses showed a substantial enrichment in health-promoting carotenoids, such as α- and β-carotene (provitamin A), lutein and phytoene, in both rind and flesh. CONCLUSION Although this strategy is perhaps not free from controversy due to the use of genetically modified viral RNA, our work does demonstrate the possibility of metabolically fortifying edible fruits using an approach in which no transgenes are involved. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Fakhreddine Houhou
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, 46022, Spain
| | - Maricarmen Martí
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, 46022, Spain
| | - Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, 46022, Spain
| | - Verónica Aragonés
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, 46022, Spain
| | - Cristina Sáez
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Valencia, 46022, Spain
| | - Jaime Cebolla-Cornejo
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Valencia, 46022, Spain
| | - Ana Pérez de Castro
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Valencia, 46022, Spain
| | - Manuel Rodríguez-Concepción
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, 46022, Spain
| | - Belén Picó
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Valencia, 46022, Spain
| | - José-Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, 46022, Spain
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Garrido-Gómez T, Castillo-Marco N, Cordero T, Simón C. Decidualization resistance in the origin of preeclampsia. Am J Obstet Gynecol 2022; 226:S886-S894. [PMID: 33007270 DOI: 10.1016/j.ajog.2020.09.039] [Citation(s) in RCA: 40] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 09/16/2020] [Accepted: 09/23/2020] [Indexed: 12/12/2022]
Abstract
Preeclampsia is a major obstetrical complication with short- and long-term life-threatening consequences for both mother and child. Shallow cytotrophoblast invasion through the uterine decidua into the spiral arteries is implicated in the pathogenesis of preeclampsia, although the cause of deficient arterial invasion remains unknown. Research that is focused on the "soil"-the maternal decidua-highlights the importance of this poorly understood but influential uterine layer. Decidualization of endometrial cells regulates embryo invasion, which is essential for spiral artery remodeling and establishing the maternal-fetal interface. Exploration of the association between impaired decidualization and preeclampsia revealed suboptimal endometrial maturation and uterine natural killer cells present in the decidua before preeclampsia development. Furthermore, decidualization defects in the endometrium of women with severe preeclampsia, characterized by impaired cytotrophoblast invasion, were detected at the time of delivery and persisted 5 years after the affected pregnancy. Recently, a maternal deficiency of annexin A2 expression was found to influence aberrant decidualization and shallow cytotrophoblast invasion, suggesting that decidualization resistance, which is a defective endometrial cell differentiation during the menstrual cycle, could underlie shallow trophoblast invasion and the poor establishment of the maternal-fetal interface. Based on these findings, the transcriptional signature in the endometrium that promotes decidualization deficiency could be detected before (or after) conception. This would serve to identify women at risk of developing severe preeclampsia and aid the development of therapies focused on improving decidualization, perhaps also preventing severe preeclampsia. Here, we discuss decidualization deficiency as a contributor to the pathogenesis of pregnancy disorders with particular attention to severe preeclampsia. We also review current diagnostic strategies and discuss future directions in diagnostic methods based on decidualization.
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Garrido-Gomez T, Castillo-Marco N, Clemente-Ciscar M, Cordero T, Muñoz-Blat I, Amadoz A, Jimenez-Almazan J, Monfort-Ortiz R, Climent R, Perales-Marin A, Simon C. Disrupted PGR-B and ESR1 signaling underlies defective decidualization linked to severe preeclampsia. eLife 2021; 10:70753. [PMID: 34709177 PMCID: PMC8553341 DOI: 10.7554/elife.70753] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 09/23/2021] [Indexed: 12/13/2022] Open
Abstract
Background: Decidualization of the uterine mucosa drives the maternal adaptation to invasion by the placenta. Appropriate depth of placental invasion is needed to support a healthy pregnancy; shallow invasion is associated with the development of severe preeclampsia (sPE). Maternal contribution to sPE through failed decidualization is an important determinant of placental phenotype. However, the molecular mechanism underlying the in vivo defect linking decidualization to sPE is unknown. Methods: Global RNA sequencing was applied to obtain the transcriptomic profile of endometrial biopsies collected from nonpregnant women who suffer sPE in a previous pregnancy and women who did not develop this condition. Samples were randomized in two cohorts, the training and the test set, to identify the fingerprinting encoding defective decidualization in sPE and its subsequent validation. Gene Ontology enrichment and an interaction network were performed to deepen in pathways impaired by genetic dysregulation in sPE. Finally, the main modulators of decidualization, estrogen receptor 1 (ESR1) and progesterone receptor B (PGR-B), were assessed at the level of gene expression and protein abundance. Results: Here, we discover the footprint encoding this decidualization defect comprising 120 genes—using global gene expression profiling in decidua from women who developed sPE in a previous pregnancy. This signature allowed us to effectively segregate samples into sPE and control groups. ESR1 and PGR were highly interconnected with the dynamic network of the defective decidualization fingerprint. ESR1 and PGR-B gene expression and protein abundance were remarkably disrupted in sPE. Conclusions: Thus, the transcriptomic signature of impaired decidualization implicates dysregulated hormonal signaling in the decidual endometria in women who developed sPE. These findings reveal a potential footprint that could be leveraged for a preconception or early prenatal screening of sPE risk, thus improving prevention and early treatments. Funding: This work has been supported by the grant PI19/01659 (MCIU/AEI/FEDER, UE) from the Spanish Carlos III Institute awarded to TGG. NCM was supported by the PhD program FDGENT/2019/008 from the Spanish Generalitat Valenciana. IMB was supported by the PhD program PRE2019-090770 and funding was provided by the grant RTI2018-094946-B-100 (MCIU/AEI/FEDER, UE) from the Spanish Ministry of Science and Innovation with CS as principal investigator. This research was funded partially by Igenomix S.L.
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Affiliation(s)
| | | | | | | | | | | | | | - Rogelio Monfort-Ortiz
- Department of Obstetrics and Gynecology, University and Polytechnic La Fe Hospital, Valencia, Spain
| | - Reyes Climent
- Department of Obstetrics and Gynecology, University and Polytechnic La Fe Hospital, Valencia, Spain
| | - Alfredo Perales-Marin
- Department of Obstetrics and Gynecology, University and Polytechnic La Fe Hospital, Valencia, Spain.,Department of Obstetrics and Gynecology, School of Medicine, Valencia University, Valencia, Spain
| | - Carlos Simon
- Igenomix Foundation, INCLIVA, Valencia, Spain.,Department of Obstetrics and Gynecology, School of Medicine, Valencia University, Valencia, Spain.,Obstetrics & Gynecology, BIDMC Harvard University, Boston, United States
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Garrido-Gómez T, Castillo-Marco N, Muñoz-Blat I, Cordero T, Clemente-Ciscar M, Monfort R, Perales A, Simón C. DEFECTIVE DECIDUALIZATION AFTER SEVERE PREECLAMPSIA IS CONNECTED TO DYSREGULATION OF PROGESTERONE RECEPTOR B AND ESTROGEN RECEPTOR 1. Fertil Steril 2021. [DOI: 10.1016/j.fertnstert.2021.07.116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Abstract
RNA interference (RNAi) is a natural mechanism for protecting against harmful genetic elements and regulating gene expression, which can be artificially triggered by the delivery of homologous double-stranded RNA (dsRNA). This mechanism can be exploited as a highly specific and environmentally friendly pest control strategy. To this aim, systems for producing large amounts of recombinant dsRNA are necessary. We describe a system to efficiently produce large amounts of circular dsRNA in Escherichia coli and demonstrate the efficient insecticidal activity of these molecules against Western corn rootworm (WCR, Diabrotica virgifera virgifera LeConte), a highly damaging pest of corn crops. In our system, the two strands of the dsRNA are expressed in E. coli embedded within the very stable scaffold of Eggplant latent viroid (ELVd), a small circular non-coding RNA. Stability in E. coli of the corresponding plasmids with long inverted repeats was achieved by using a cDNA coding for a group-I autocatalytic intron from Tetrahymena thermophila as a spacer. RNA circularization and large-scale accumulation in E. coli cells was facilitated by co-expression of eggplant tRNA ligase, the enzyme that ligates ELVd during replication in the host plant. The inserted intron efficiently self-spliced from the RNA product during transcription. Circular RNAs containing a dsRNA moiety homologous to smooth septate junction 1 (DvSSJ1) gene exhibited excellent insecticide activity against WCR larvae. Finally, we show that the viroid scaffold can be separated from the final circular dsRNA product using a second T. thermophila self-splicing intron in a permuted form.
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Affiliation(s)
- Beltrán Ortolá
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universitat Politècnica de Valencia), Valencia, Spain
| | - Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universitat Politècnica de Valencia), Valencia, Spain
| | - Xu Hu
- Corteva Agriscience, Johnston, Iowa, USA
| | - José-Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universitat Politècnica de Valencia), Valencia, Spain
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Rostain W, Shen S, Cordero T, Rodrigo G, Jaramillo A. Engineering a Circular Riboregulator in Escherichia coli. Biodes Res 2020; 2020:1916789. [PMID: 37849901 PMCID: PMC10521646 DOI: 10.34133/2020/1916789] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Accepted: 08/17/2020] [Indexed: 10/19/2023] Open
Abstract
RNAs of different shapes and sizes, natural or synthetic, can regulate gene expression in prokaryotes and eukaryotes. Circular RNAs have recently appeared to be more widespread than previously thought, but their role in prokaryotes remains elusive. Here, by inserting a riboregulatory sequence within a group I permuted intron-exon ribozyme, we created a small noncoding RNA that self-splices to produce a circular riboregulator in Escherichia coli. We showed that the resulting riboregulator can trans-activate gene expression by interacting with a cis-repressed messenger RNA. We characterized the system with a fluorescent reporter and with an antibiotic resistance marker, and we modeled this novel posttranscriptional mechanism. This first reported example of a circular RNA regulating gene expression in E. coli adds to an increasing repertoire of RNA synthetic biology parts, and it highlights that topological molecules can play a role in the case of prokaryotic regulation.
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Affiliation(s)
- William Rostain
- Warwick Integrative Synthetic Biology Centre (WISB) and School of Life Sciences, University of Warwick, CV4 7AL Coventry, UK
- Institute of Systems and Synthetic Biology, CNRS-Université d’Évry Val-d’Essonne, 91000 Évry, France
| | - Shensi Shen
- Institute of Systems and Synthetic Biology, CNRS-Université d’Évry Val-d’Essonne, 91000 Évry, France
| | - Teresa Cordero
- Warwick Integrative Synthetic Biology Centre (WISB) and School of Life Sciences, University of Warwick, CV4 7AL Coventry, UK
- Instituto de Biología Molecular y Celular de Plantas, CSIC-Universidad Politécnica de Valencia, 46022 Valencia, Spain
| | - Guillermo Rodrigo
- Institute of Systems and Synthetic Biology, CNRS-Université d’Évry Val-d’Essonne, 91000 Évry, France
- Instituto de Biología Molecular y Celular de Plantas, CSIC-Universidad Politécnica de Valencia, 46022 Valencia, Spain
- Institute for Integrative Systems Biology (I2SysBio), CSIC-Universitat de València, 46980 Paterna, Spain
| | - Alfonso Jaramillo
- Warwick Integrative Synthetic Biology Centre (WISB) and School of Life Sciences, University of Warwick, CV4 7AL Coventry, UK
- Institute of Systems and Synthetic Biology, CNRS-Université d’Évry Val-d’Essonne, 91000 Évry, France
- Institute for Integrative Systems Biology (I2SysBio), CSIC-Universitat de València, 46980 Paterna, Spain
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Shi X, Cordero T, Garrigues S, Marcos JF, Daròs J, Coca M. Efficient production of antifungal proteins in plants using a new transient expression vector derived from tobacco mosaic virus. Plant Biotechnol J 2019; 17:1069-1080. [PMID: 30521145 PMCID: PMC6523586 DOI: 10.1111/pbi.13038] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 10/24/2018] [Accepted: 11/08/2018] [Indexed: 06/09/2023]
Abstract
Fungi that infect plants, animals or humans pose a serious threat to human health and food security. Antifungal proteins (AFPs) secreted by filamentous fungi are promising biomolecules that could be used to develop new antifungal therapies in medicine and agriculture. They are small highly stable proteins with specific potent activity against fungal pathogens. However, their exploitation requires efficient, sustainable and safe production systems. Here, we report the development of an easy-to-use, open access viral vector based on Tobacco mosaic virus (TMV). This new system allows the fast and efficient assembly of the open reading frames of interest in small intermediate entry plasmids using the Gibson reaction. The manipulated TMV fragments are then transferred to the infectious clone by a second Gibson assembly reaction. Recombinant proteins are produced by agroinoculating plant leaves with the resulting infectious clones. Using this simple viral vector, we have efficiently produced two different AFPs in Nicotiana benthamiana leaves, namely the Aspergillus giganteus AFP and the Penicillium digitatum AfpB. We obtained high protein yields by targeting these bioactive small proteins to the apoplastic space of plant cells. However, when AFPs were targeted to intracellular compartments, we observed toxic effects in the host plants and undetectable levels of protein. We also demonstrate that this production system renders AFPs fully active against target pathogens, and that crude plant extracellular fluids containing the AfpB can protect tomato plants from Botrytis cinerea infection, thus supporting the idea that plants are suitable biofactories to bring these antifungal proteins to the market.
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Affiliation(s)
- Xiaoqing Shi
- Centre for Research in Agricultural Genomics (CRAGCSIC‐IRTA‐UAB‐UB)Cerdanyola del VallèsSpain
| | - Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas (IBMCPCSIC‐Universitat Politècnica de València)ValenciaSpain
| | - Sandra Garrigues
- Instituto de Agroquímica y Tecnología de Alimentos (IATA, CSIC)PaternaSpain
| | - Jose F. Marcos
- Instituto de Agroquímica y Tecnología de Alimentos (IATA, CSIC)PaternaSpain
| | - José‐Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas (IBMCPCSIC‐Universitat Politècnica de València)ValenciaSpain
| | - María Coca
- Centre for Research in Agricultural Genomics (CRAGCSIC‐IRTA‐UAB‐UB)Cerdanyola del VallèsSpain
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Ibeh P, García-Mateos F, Rosas J, Rodríguez-Mirasol J, Cordero T. Activated carbon monoliths from lignocellulosic biomass waste for electrochemical applications. J Taiwan Inst Chem Eng 2019. [DOI: 10.1016/j.jtice.2019.02.019] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Ternero-Hidalgo J, Guerrero-Pérez M, Rodríguez-Mirasol J, Cordero T. Electrospun vanadium oxide based submicron diameter fiber catalysts. Part II: Effect of chemical formulation and dopants. Catal Today 2019. [DOI: 10.1016/j.cattod.2018.10.072] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Ternero-Hidalgo J, Torres-Liñán J, Guerrero-Pérez M, Rodríguez-Mirasol J, Cordero T. Electrospun vanadium oxide based submicron diameter fiber catalysts. Part I: Preparation procedure and propane ODH application. Catal Today 2019. [DOI: 10.1016/j.cattod.2018.10.073] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Cordero T, Aragonés V, Daròs JA. Large-scale Production of Recombinant RNAs on a Circular Scaffold Using a Viroid-derived System in Escherichia coli. J Vis Exp 2018. [PMID: 30582599 DOI: 10.3791/58472] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
With increasing interest in RNA biology and the use of RNA molecules in sophisticated biotechnological applications, the methods to produce large amounts of recombinant RNAs are limited. Here, we describe a protocol to produce large amounts of recombinant RNA in Escherichia coli based on co-expression of a chimeric molecule that contains the RNA of interest in a viroid scaffold and a plant tRNA ligase. Viroids are relatively small, non-coding, highly base-paired circular RNAs that are infectious to higher plants. The host plant tRNA ligase is an enzyme recruited by viroids that belong to the family Avsunviroidae, such as Eggplant latent viroid (ELVd), to mediate RNA circularization during viroid replication. Although ELVd does not replicate in E. coli, an ELVd precursor is efficiently transcribed by the E. coli RNA polymerase and processed by the embedded hammerhead ribozymes in bacterial cells, and the resulting monomers are circularized by the co-expressed tRNA ligase reaching a remarkable concentration. The insertion of an RNA of interest into the ELVd scaffold enables the production of tens of milligrams of the recombinant RNA per liter of bacterial culture in regular laboratory conditions. A main fraction of the RNA product is circular, a feature that facilitates the purification of the recombinant RNA to virtual homogeneity. In this protocol, a complementary DNA (cDNA) corresponding to the RNA of interest is inserted in a particular position of the ELVd cDNA in an expression plasmid that is used, along the plasmid to co-express eggplant tRNA ligase, to transform E. coli. Co-expression of both molecules under the control of strong constitutive promoters leads to production of large amounts of the recombinant RNA. The recombinant RNA can be extracted from the bacterial cells and separated from the bulk of bacterial RNAs taking advantage of its circularity.
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Affiliation(s)
- Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València, Spain
| | - Verónica Aragonés
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València, Spain
| | - José-Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València, Spain;
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Cordero T, Rosado A, Majer E, Jaramillo A, Rodrigo G, Daròs JA. Boolean Computation in Plants Using Post-translational Genetic Control and a Visual Output Signal. ACS Synth Biol 2018; 7:2322-2330. [PMID: 30212620 DOI: 10.1021/acssynbio.8b00214] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Due to autotrophic growing capacity and extremely rich secondary metabolism, plants should be preferred targets of synthetic biology. However, developments in plants usually run below those in other taxonomic groups. In this work we engineered genetic circuits capable of logic YES, OR and AND Boolean computation in plant tissues with a visual output signal. The circuits, which are deployed by means of Agrobacterium tumefaciens, perform with the conditional activity of the MYB transcription factor Rosea1 from Antirrhinum majus inducing the accumulation of anthocyanins, plant endogenous pigments that are directly visible to the naked eye or accurately quantifiable by spectrophotometric analysis. The translational fusion of Rosea1 to several viral proteins, such as potyvirus NIb or fragments thereof, rendered the transcription factor inactive. However, anthocyanin accumulation could be restored by inserting protease cleavage sites between both moieties of the fusion and by coexpressing specific proteases, such as potyvirus nuclear inclusion a protease.
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Affiliation(s)
- Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas, CSIC-Universitat Politècnica de València, 46022 Valencia, Spain
| | - Arantxa Rosado
- Instituto de Biología Molecular y Celular de Plantas, CSIC-Universitat Politècnica de València, 46022 Valencia, Spain
- Institute for Integrative Systems Biology, Universitat de València-CSIC, 46980 Paterna, Spain
| | - Eszter Majer
- Instituto de Biología Molecular y Celular de Plantas, CSIC-Universitat Politècnica de València, 46022 Valencia, Spain
| | - Alfonso Jaramillo
- Institute for Integrative Systems Biology, Universitat de València-CSIC, 46980 Paterna, Spain
- Warwick Integrative Synthetic Biology Centre and School of Life Sciences, University of Warwick, Coventry CV4 7AL, U.K
- Institute of Systems and Synthetic Biology, Université d’Évry Val d’Essonne-CNRS, F-91000 Évry, France
| | - Guillermo Rodrigo
- Instituto de Biología Molecular y Celular de Plantas, CSIC-Universitat Politècnica de València, 46022 Valencia, Spain
- Institute for Integrative Systems Biology, Universitat de València-CSIC, 46980 Paterna, Spain
| | - José-Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas, CSIC-Universitat Politècnica de València, 46022 Valencia, Spain
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Cordero T, Ortolá B, Daròs JA. Mutational Analysis of Eggplant Latent Viroid RNA Circularization by the Eggplant tRNA Ligase in Escherichia coli. Front Microbiol 2018; 9:635. [PMID: 29675002 PMCID: PMC5895719 DOI: 10.3389/fmicb.2018.00635] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Accepted: 03/19/2018] [Indexed: 11/13/2022] Open
Abstract
Eggplant latent viroid (ELVd) is a relatively small non-coding circular RNA that induces asymptomatic infections in eggplants (Solanum melongena L.). Like other viroid species that belong to the family Avsunviroidae, ELVd contains hammerhead ribozymes in the strands of both polarities that self-cleave RNAs producing terminal 5'-hydroxyl and 2',3'-cyclic phosphodiester groups. Available experimental data indicate that ELVd replicates in the chloroplasts of infected cells through a symmetric rolling-circle mechanism, in which RNA circularization is catalyzed by the chloroplastic isoform of the tRNA ligase. In this work, a mutational analysis was performed to gain insight into the sequence and structural requirements of the tRNA ligase-mediated circularization of ELVd RNAs. In the predicted minimum free energy conformation of the monomeric linear ELVd RNA intermediate of plus (+) polarity, the ligation site is located in the lower part of an opened internal loop, which is present in a quasi-rod-like structure that occupies the center of the molecule. The mutations analyzed herein consisted of punctual nucleotide substitutions and deletions surrounding the ligation site on the upper and lower strands of the ELVd quasi-double-stranded structure. Computational predictions of the mutated ELVd conformations indicated different degrees of distortions compared to the minimum free energy conformation of the wild-type ELVd linear monomer of + polarity. When these mutant RNAs were expressed in Escherichia coli, they were all circularized by the eggplant tRNA ligase with approximately the same efficiency as the wild-type ELVd, except for those that directly affected the ribozyme domain. These results suggest that the viroid ribozyme domains, in addition to self-cleavage, are also involved in the tRNA ligase-mediated circularization of the monomeric linear replication intermediates.
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Affiliation(s)
- Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, Spain
| | - Beltrán Ortolá
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, Spain
| | - José-Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas - Universitat Politècnica de València), Valencia, Spain
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Daròs JA, Aragonés V, Cordero T. A viroid-derived system to produce large amounts of recombinant RNA in Escherichia coli. Sci Rep 2018; 8:1904. [PMID: 29382906 PMCID: PMC5789856 DOI: 10.1038/s41598-018-20314-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2017] [Accepted: 01/17/2018] [Indexed: 11/12/2022] Open
Abstract
Viruses have been engineered into useful biotechnological tools for gene therapy or to induce the synthesis of products of interest, such as therapeutic proteins and vaccines, in animal and fungal cells, bacteria or plants. Viroids are a particular class of infectious agents of higher plants that exclusively consist of a small non-protein-coding circular RNA molecule. In the same way as viruses have been transformed into useful biotechnological devices, can viroids be converted into beneficial tools? We show herein that, by expressing Eggplant latent viroid (ELVd) derived RNAs in Escherichia coli together with the eggplant tRNA ligase, this being the enzyme involved in viroid circularization in the infected plant, RNAs of interest like aptamers, extended hairpins, or other structured RNAs are produced in amounts of tens of milligrams per liter of culture. Although ELVd fails to replicate in E. coli, ELVd precursors self-cleave through the embedded hammerhead ribozymes and the resulting monomers are, in part, circularized by the co-expressed enzyme. The mature viroid forms and the protein likely form a ribonucleoprotein complex that transitorily accumulates in E. coli cells at extraordinarily amounts.
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Affiliation(s)
- José-Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València), 46022, Valencia, Spain.
| | - Verónica Aragonés
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València), 46022, Valencia, Spain
| | - Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València), 46022, Valencia, Spain
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Cordero T, Mohamed MA, López-Moya JJ, Daròs JA. A Recombinant Potato virus Y Infectious Clone Tagged with the Rosea1 Visual Marker (PVY-Ros1) Facilitates the Analysis of Viral Infectivity and Allows the Production of Large Amounts of Anthocyanins in Plants. Front Microbiol 2017; 8:611. [PMID: 28428782 PMCID: PMC5382215 DOI: 10.3389/fmicb.2017.00611] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Accepted: 03/27/2017] [Indexed: 11/13/2022] Open
Abstract
Potato virus Y (PVY) is a major threat to the cultivation of potato and other solanaceous plants. By inserting a cDNA coding for the Antirrhinum majus Rosea1 transcription factor into a PVY infectious clone, we created a biotechnological tool (PVY-Ros1) that allows infection by this relevant plant virus to be tracked by the naked eye with no need for complex instrumentation. Rosea1 is an MYB-type transcription factor whose expression activates the biosynthesis of anthocyanin pigments in a dose-specific and cell-autonomous manner. Our experiments showed that the mechanical inoculation of solanaceous plants with PVY-Ros1 induced the formation of red infection foci in inoculated tissue and solid dark red pigmentation in systemically infected tissue, which allows disease progression to be easily monitored. By using silver nanoparticles, a nanomaterial with exciting antimicrobial properties, we proved the benefits of PVY-Ros1 to analyze novel antiviral treatments in plants. PVY-Ros1 was also helpful for visually monitoring the virus transmission process by an aphid vector. Most importantly, the anthocyanin analysis of infected tobacco tissues demonstrated that PVY-Ros1 is an excellent biotechnological tool for molecular farming because it induces the accumulation of larger amounts of anthocyanins, antioxidant compounds of nutritional, pharmaceutical and industrial interest, than those that naturally accumulate in some fruits and vegetables well known for their high anthocyanin content. Hence these results support the notion that the virus-mediated expression of regulatory factors and enzymes in plants facilitates easy quick plant metabolism engineering.
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Affiliation(s)
- Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas – Universidad Politécnica de Valencia)Valencia, Spain
| | - Mohamed A. Mohamed
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas – Universidad Politécnica de Valencia)Valencia, Spain
| | - Juan-José López-Moya
- Centre for Research in Agricultural Genomics, Consejo Superior de Investigaciones Científicas – Institut de Recerca i Tecnologia Agroalimentaries – Universitat Autònoma de Barcelona – Universitat de BarcelonaBarcelona, Spain
| | - José-Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas – Universidad Politécnica de Valencia)Valencia, Spain
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Cordero T, Cerdán L, Carbonell A, Katsarou K, Kalantidis K, Daròs JA. Dicer-Like 4 Is Involved in Restricting the Systemic Movement of Zucchini yellow mosaic virus in Nicotiana benthamiana. Mol Plant Microbe Interact 2017; 30:63-71. [PMID: 27958768 DOI: 10.1094/mpmi-11-16-0239-r] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Zucchini yellow mosaic virus (ZYMV) induces serious diseases in cucurbits. To create a tool to screen for resistance genes, we cloned a wild ZYMV isolate and inserted the visual marker Rosea1 to obtain recombinant clone ZYMV-Ros1. While in some plant-virus combinations Rosea1 induces accumulation of anthocyanins in infected tissues, ZYMV-Ros1 infection of cucurbits did not lead to detectable anthocyanin accumulation. However, the recombinant virus did induce dark red pigmentation in infected tissues of the model plant Nicotiana benthamiana. In this species, ZYMV-Ros1 multiplied efficiently in local inoculated tissue but only a few progeny particles established infection foci in upper leaves. We used this system to analyze the roles of Dicer-like (DCL) genes, core components of plant antiviral RNA silencing pathways, in ZYMV infection. ZYMV-Ros1 local replication was not significantly affected in single DCL knockdown lines nor in double DCL2/4 and triple DCL2/3/4 knockdown lines. ZYMV-Ros1 systemic accumulation was not affected in knockdown lines DCL1, DCL2, and DCL3. However in DCL4 and also in DCL2/4 and DCL2/3/4 knockdown lines, ZYMV-Ros1 systemic accumulation dramatically increased, which highlights the key role of DCL4 in restricting virus systemic movement. The effect of DCL4 on ZYMV systemic movement was confirmed with a wild-type version of the virus.
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Affiliation(s)
- Teresa Cordero
- 1 Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia), 46022 Valencia, Spain; and
| | - Lidia Cerdán
- 1 Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia), 46022 Valencia, Spain; and
| | - Alberto Carbonell
- 1 Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia), 46022 Valencia, Spain; and
| | - Konstantina Katsarou
- 2 Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology; and Department of Biology, University of Crete, Heraklion, Crete, Greece
| | - Kriton Kalantidis
- 2 Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology; and Department of Biology, University of Crete, Heraklion, Crete, Greece
| | - José-Antonio Daròs
- 1 Instituto de Biología Molecular y Celular de Plantas (Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia), 46022 Valencia, Spain; and
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Rodrigo G, Prakash S, Cordero T, Kushwaha M, Jaramillo A. Functionalization of an Antisense Small RNA. J Mol Biol 2016; 428:889-92. [PMID: 26756967 PMCID: PMC4819895 DOI: 10.1016/j.jmb.2015.12.022] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Revised: 12/23/2015] [Accepted: 12/23/2015] [Indexed: 12/24/2022]
Abstract
In order to explore the possibility of adding new functions to preexisting genes, we considered a framework of riboregulation. We created a new riboregulator consisting of the reverse complement of a known riboregulator. Using computational design, we engineered a cis-repressing 5′ untranslated region that can be activated by this new riboregulator. As a result, both RNAs can orthogonally trans-activate translation of their cognate, independent targets. The two riboregulators can also repress each other by antisense interaction, although not symmetrically. Our work highlights that antisense small RNAs can work as regulatory agents beyond the antisense paradigm and that, hence, they could be interfaced with other circuits used in synthetic biology. We have engineered a riboregulator as the negative-sense strand of another riboregulator. This new RNA molecule performs the cellular function of titration of a functional molecule or trans-activation of gene expression. We have followed a computational design approach with energetic and structural criteria to obtain the nucleotide sequence of a 5′ untranslated region responding to the new riboregulator. We have engineered different regulatory circuits with trans-activating and anti-trans-activating small RNAs and characterized them at the population and single-cell levels.
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Affiliation(s)
- Guillermo Rodrigo
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas, Universidad Politécnica de Valencia, 46022 Valencia, Spain
| | - Satya Prakash
- School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Teresa Cordero
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas, Universidad Politécnica de Valencia, 46022 Valencia, Spain
| | - Manish Kushwaha
- School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Alfonso Jaramillo
- School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom; Institute of Systems and Synthetic Biology, Centre National de la Recherche Scientifique, Université d'Evry val d'Essonne, 91000 Évry, France.
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Valero-Romero MJ, Sartipi S, Sun X, Rodríguez-Mirasol J, Cordero T, Kapteijn F, Gascon J. Carbon/H-ZSM-5 composites as supports for bi-functional Fischer–Tropsch synthesis catalysts. Catal Sci Technol 2016. [DOI: 10.1039/c5cy01942g] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Deposition of pyrolytic carbon on the surface of mesoHZSM-5 improves the activity, C5–C9 selectivity and decreases CH4 selectivity by weakening cobalt-support interaction.
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Affiliation(s)
| | - S. Sartipi
- Catalysis Engineering
- Dept. Chemical Engineering
- Delft University of Technology
- 2628 BL Delft
- The Netherlands
| | - X. Sun
- Catalysis Engineering
- Dept. Chemical Engineering
- Delft University of Technology
- 2628 BL Delft
- The Netherlands
| | | | - T. Cordero
- Universidad de Málaga
- Andalucía Tech
- Escuela de Ingenierías
- 29071 Málaga
- Spain
| | - F. Kapteijn
- Catalysis Engineering
- Dept. Chemical Engineering
- Delft University of Technology
- 2628 BL Delft
- The Netherlands
| | - J. Gascon
- Catalysis Engineering
- Dept. Chemical Engineering
- Delft University of Technology
- 2628 BL Delft
- The Netherlands
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Calzado M, Valero-Romero M, Garriga P, Chica A, Guerrero-Pérez M, Rodríguez-Mirasol J, Cordero T. Lignocellulosic waste-derived basic solids and their catalytic applications for the transformation of biomass waste. Catal Today 2015. [DOI: 10.1016/j.cattod.2014.06.038] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Abstract
RNA can self-assemble into complex structures through base pairing, as well as encode information and bind with proteins to induce enzymatic activity. Furthermore, RNA can possess intrinsic enzymatic-like (ribozymatic) activity, a property that, if necessary, can be activated only upon the binding of a small molecule or another RNA (as is the case in aptazymes). As such, RNA could be of use in nanotechnology as a programmable polymer capable of self-assembling into complex topological structures. In this chapter we describe a method for designing advanced topological structures using self-circulating RNA, exemplified by three tiers of topologically manipulated self-assembling synthetic RNA systems. The first tier of topological manipulation, the RNA knot is a physically locked structure, formed by circularizing one monomer of knotted single-stranded RNA left with loose ends (an "open" knot). The second tier, a two interlocking ring system, is made by interlocking two circular RNA components: a circular RNA target, and an RNA lasso designed to intercalate the target before circularizing. The third tier naturally extends this system into a string of topologically locked circular RNA molecules (an RNA chain). We detail the methodology used for designing such topologically complex RNAs, including computational predictions of secondary structure, and where appropriate, RNA-RNA interactions, illustrated by examples. We then describe the experimental methods used for characterizing such structures, and provide sequences of building blocks that can be used for topological manipulation of RNA.
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Affiliation(s)
- Jack Hassall
- School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK
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Valero-Romero M, Cabrera-Molina A, Guerrero-Pérez M, Rodríguez-Mirasol J, Cordero T. Carbon materials as template for the preparation of mixed oxides with controlled morphology and porous structure. Catal Today 2014. [DOI: 10.1016/j.cattod.2013.10.093] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Ruiz-Rosas R, Valero-Romero MJ, Salinas-Torres D, Rodríguez-Mirasol J, Cordero T, Morallón E, Cazorla-Amorós D. Electrochemical performance of hierarchical porous carbon materials obtained from the infiltration of lignin into zeolite templates. ChemSusChem 2014. [PMID: 24678067 DOI: 10.1016/j.jpowsour.2016.03.096] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Hierarchical porous carbon materials prepared by the direct carbonization of lignin/zeolite mixtures and the subsequent basic etching of the inorganic template have been electrochemically characterized in acidic media. These lignin-based templated carbons have interesting surface chemistry features, such as a variety of surface oxygen groups and also pyridone and pyridinic groups, which results in a high capacitance enhancement compared to petroleum-pitch-based carbons obtained by the same procedure. Furthermore, they are easily electro-oxidized in a sulfuric acid electrolyte under positive polarization to produce a large amount of surface oxygen groups that boosts the pseudocapacitance. The lignin-based templated carbons showed a specific capacitance as high as 250 F g(-1) at 50 mA g(-1) , with a capacitance retention of 50 % and volumetric capacitance of 75 F cm(-3) at current densities higher than 20 A g(-1) thanks to their suitable porous texture. These results indicate the potential use of inexpensive biomass byproducts, such as lignin, as carbon precursors in the production of hierarchical carbon materials for electrodes in electrochemical capacitors.
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Affiliation(s)
- R Ruiz-Rosas
- Instituto Universitario de Materiales de Alicante, Universidad de Alicante, Ap. 99, 03080, Alicante (Spain)
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Ruiz-Rosas R, Valero-Romero MJ, Salinas-Torres D, Rodríguez-Mirasol J, Cordero T, Morallón E, Cazorla-Amorós D. Electrochemical performance of hierarchical porous carbon materials obtained from the infiltration of lignin into zeolite templates. ChemSusChem 2014; 7:1458-1467. [PMID: 24678067 DOI: 10.1002/cssc.201301408] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2013] [Indexed: 06/03/2023]
Abstract
Hierarchical porous carbon materials prepared by the direct carbonization of lignin/zeolite mixtures and the subsequent basic etching of the inorganic template have been electrochemically characterized in acidic media. These lignin-based templated carbons have interesting surface chemistry features, such as a variety of surface oxygen groups and also pyridone and pyridinic groups, which results in a high capacitance enhancement compared to petroleum-pitch-based carbons obtained by the same procedure. Furthermore, they are easily electro-oxidized in a sulfuric acid electrolyte under positive polarization to produce a large amount of surface oxygen groups that boosts the pseudocapacitance. The lignin-based templated carbons showed a specific capacitance as high as 250 F g(-1) at 50 mA g(-1) , with a capacitance retention of 50 % and volumetric capacitance of 75 F cm(-3) at current densities higher than 20 A g(-1) thanks to their suitable porous texture. These results indicate the potential use of inexpensive biomass byproducts, such as lignin, as carbon precursors in the production of hierarchical carbon materials for electrodes in electrochemical capacitors.
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Affiliation(s)
- R Ruiz-Rosas
- Instituto Universitario de Materiales de Alicante, Universidad de Alicante, Ap. 99, 03080, Alicante (Spain)
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Guerrero-Pérez M, Valero-Romero M, Hernández S, Nieto JL, Rodríguez-Mirasol J, Cordero T. Lignocellulosic-derived mesoporous materials: An answer to manufacturing non-expensive catalysts useful for the biorefinery processes. Catal Today 2012. [DOI: 10.1016/j.cattod.2012.03.068] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Loscertales IG, Díaz Gómez JE, Lallave M, Rosas JM, Bedia J, Rodríguez-Mirasol J, Cordero T, Marquez M, Shenoy S, Wnek GE, Thorsen T, Fernández-Nieves A, Barrero A. Coaxial Electrospinning for Nanostructured Advanced Materials. ACTA ACUST UNITED AC 2011. [DOI: 10.1557/proc-0948-b06-01] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
ABSTRACTElectro-hydro-dynamic (EHD) compound jets, with diameters in the micro and nanometric size range, from conical menisci of two co-flowing liquids, is a consolidated platform for the production of nanofibers with inner structure, in a process so-called coaxial electrospinning or co-electrospinning. In contrast to other multi-step template based procedures, the EHD methodology is much more simple and general since, firstly, a solid template is needless and, secondly, the process is seldom affected by the chemistry of the liquids. This gentle process allows selecting the liquid precursors depending on the application sought for the nanofibers. Here, we review different products obtained by this EHD technique: (1) solid and hollow carbon nanofibers from different precursors (polyacrylonitrile, polyvinylpyrrolidone and lignin), (2) nanofibers of biocompatible polymers encapsulating liquids in the form of beads, (3) spinning nanofibers of alginate and (4) in-fiber encapsulation of active microgels.
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Affiliation(s)
- J. Bedia
- Chemical Engineering Dept., School of Industrial Engineering, University of Málaga, Campus de Teatinos, 29071 Málaga, Spain
| | - R. Ruiz‐Rosas
- Chemical Engineering Dept., School of Industrial Engineering, University of Málaga, Campus de Teatinos, 29071 Málaga, Spain
| | - J. Rodríguez‐Mirasol
- Chemical Engineering Dept., School of Industrial Engineering, University of Málaga, Campus de Teatinos, 29071 Málaga, Spain
| | - T. Cordero
- Chemical Engineering Dept., School of Industrial Engineering, University of Málaga, Campus de Teatinos, 29071 Málaga, Spain
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Vargas F, Zoltan T, Ramirez AH, Cordero T, Chavez V, Izzo C, López V, Cárdenas YM, Fernández A, Hincapie L, Fuentes A. Studies of the photooxidant properties of antibacterial fluoroquinolones and their naphthalene derivatives. Pharmazie 2009; 64:116-122. [PMID: 19320285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
We synthesized and determined the production of reactive oxygen species (ROS) as 1O2, *-O2, *OH, H2O2 during the photolysis with UV-A light of three antibacterial quinolones and their naphthyl ester derivatives. Singlet oxygen and ROS dose-dependant generation from norfloxacin (1), enoxacin (2), ciprofloxacin (3) and their respective naphthyl ester derivatives 4-6 were detecting in cell-free systems by the histidine assay and by luminol-enhanced chemiluminescence (LCL). Both the electronic absorption and emission spectra were quantified and their photostability determined. The antibacterial activity in darkness and under irradiation of compounds 4, 5 and 6 was tested on E. coli and compared with their parent drugs.
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Affiliation(s)
- F Vargas
- Laboratorio de Fotoquímica, Centro de Química, Instituto Venezolano de Investigaciones Científicas I.V.I.C., Carretera Panamericana Klm. 11, Apartado 20632, Caracas 1020-A, Venezuela.
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Cotoruelo LM, Marqués MD, Díaz FJ, Rodríguez‐Mirasol J, Cordero T, Rodríguez JJ. Activated Carbons from Lignin: Their Application in Liquid Phase Adsorption. SEP SCI TECHNOL 2007. [DOI: 10.1080/01496390701626800] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Santos A, Yustos P, Cordero T, Gomis S, Rodríguez S, García-Ochoa F. Catalytic wet oxidation of phenol on active carbon: stability, phenol conversion and mineralization. Catal Today 2005. [DOI: 10.1016/j.cattod.2005.02.006] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Gonzalez-Serrano E, Cordero T, Rodriguez-Mirasol J, Cotoruelo L, Rodriguez JJ. Removal of water pollutants with activated carbons prepared from H3PO4 activation of lignin from kraft black liquors. Water Res 2004; 38:3043-3050. [PMID: 15261542 DOI: 10.1016/j.watres.2004.04.048] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2003] [Revised: 02/04/2004] [Accepted: 04/19/2004] [Indexed: 05/24/2023]
Abstract
Activated carbons with a high BET surface area and a well-developed porosity have been prepared from pyrolysis of H3PO4-impregnated lignin precipitated from kraft black liquors. Impregnation ratios within the range of 1-3 and activation temperatures of 623-873 K have been used, giving rise to carbons with different porous and surface chemical structure. Increasing the activation temperature and the impregnation ratio leads to a widening of the porous structure with a higher relative contribution of mesoporosity. The potential application of these carbons for the removal of water pollutants has been investigated by measuring their adsorption capacities for phenol, 2,4,5-trichlorophenol and Cr (VI) as representative of toxic contaminants found in industrial wastewaters. The results obtained compare well and even favorably with those reported in the literature for other activated carbons. An impregnation ratio and an activation temperature around 2 g H3PO4/g lignin and 700 K, respectively, are recommended as the best combination of operating conditions to prepare activated carbons for aqueous phase applications although at lower values of these two variables carbons with good adsorption capacities are also obtained.
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Cordero T, Rodriguez-Mirasol J, Tancredi N, Piriz J, Vivo G, Rodriguez JJ. Influence of Surface Composition and Pore Structure on Cr(III) Adsorption onto Activated Carbons. Ind Eng Chem Res 2002. [DOI: 10.1021/ie020210f] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | | | | | | | | | - J. J. Rodriguez
- Chemical Engineering, University Autonoma of Madrid, 28049 Madrid, Spain
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Gonzalez-Serrano E, Cordero T, Rodríguez-Mirasol J, Rodríguez JJ. Development of Porosity upon Chemical Activation of Kraft Lignin with ZnCl2. Ind Eng Chem Res 1997. [DOI: 10.1021/ie970261q] [Citation(s) in RCA: 107] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- E. Gonzalez-Serrano
- Department of Chemical Engineering, University of Málaga, 29071 Málaga, Spain
| | - T. Cordero
- Department of Chemical Engineering, University of Málaga, 29071 Málaga, Spain
| | | | - J. J. Rodríguez
- Department of Chemical Engineering, University of Málaga, 29071 Málaga, Spain
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Rodríguez‐Maroto JM, García F, Rodríguez‐Mirasol J, Cordero T, Suau R, Rodríguez JJ. Characterization of liquid wastes from eucalyptus wood and Kraft lignin charring. ACTA ACUST UNITED AC 1993. [DOI: 10.1080/10934529309375901] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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