Camera trap surveys of Atlantic Forest mammals: A data set for analyses considering imperfect detection (2004-2020)

Camera traps became the main observational method of a myriad of species over large areas. Data sets from camera traps can be used to describe the patterns and monitor the occupancy, abundance, and richness of wildlife, essential information for conservation in times of rapid climate and land-cover changes. Habitat loss and poaching are responsible for historical population losses of mammals in the Atlantic Forest biodiversity hotspot, especially for medium to large-sized species. Here we present a data set from camera trap surveys of medium to large-sized native mammals (>1 kg) across the Atlantic Forest. We compiled data from 5380 ground-level camera trap deployments in 3046 locations, from 2004 to 2020, resulting in 43,068 records of 58 species. These data add to existing data sets of mammals in the Atlantic Forest by including dates of camera operation needed for analyses dealing with imperfect detection. We also included, when available, information on important predictors of detection, namely the camera brand and model, use of bait, and obstruction of camera viewshed that can be measured from example pictures at each camera location. Besides its application in studies on the patterns and mechanisms behind occupancy, relative abundance, richness, and detection, the data set presented here can be used to study species' daily activity patterns, activity levels, and spatiotemporal interactions between species. Moreover, data can be used combined with other data sources in the multiple and expanding uses of integrated population modeling. An R script is available to view summaries of the data set. We expect that this data set will be used to advance the knowledge of mammal assemblages and to inform evidence-based solutions for the conservation of the Atlantic Forest. The data are not copyright restricted; please cite this paper when using the data.

Human-modified landscapes alter home range and movement patterns of capybaras

The expansion of human activity forces species to co-exist with people in human-modified landscapes (HMLs). However, living in HMLs demands behavioral adaptations, and the proximity between wildlife and people heightens human–wildlife conflicts. Capybara (Hydrochoerus hydrochaeris) is a thriving rodent species in HMLs in Brazil and as such, is involved in human–wildlife conflicts, such as vehicle collisions and transmission of Brazilian spotted fever (BSF). Despite their public importance, the effects of HMLs on capybara movement behavior have never been investigated. Our study aimed to investigate changes in home range, ranging pattern, and activity, for capybaras in six HMLs and two natural landscapes (NLs) by monitoring capybaras with GPS collars. We found home ranges 2.43 times greater in NLs than in HMLs and differences in ranging pattern in HMLs. Capybaras tended to be more nocturnal and move shorter distances across HMLs than NLs. Our results confirm the impacts of the HMLs altering capybara movement. The aggregation of capybaras in very small home ranges might imply on greater risks of tick infestations. In addition, capybara–vehicle collision may be increased during capybaras’ nocturnal activity. Therefore, we recommend that transportation agencies avoid the construction of transportation infrastructures (roads, railways, airstrips) in capybaras’ home ranges, which should be of restricted access to people in BSF endemic areas.

NEOTROPICAL CARNIVORES: a data set on carnivore distribution in the Neotropics

Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropical region: Canidae; Felidae; Mephitidae; Mustelidae; Otariidae; Phocidae; Procyonidae; and Ursidae. Herein, we include published and unpublished data on native terrestrial Neotropical carnivores (Canidae; Felidae; Mephitidae; Mustelidae; Procyonidae; and Ursidae). NEOTROPICAL CARNIVORES is a publicly available data set that includes 99,605 data entries from 35,511 unique georeferenced coordinates. Detection/non-detection and quantitative data were obtained from 1818 to 2018 by researchers, governmental agencies, non-governmental organizations, and private consultants. Data were collected using several methods including camera trapping, museum collections, roadkill, line transect, and opportunistic records. Literature (peer-reviewed and grey literature) from Portuguese, Spanish and English were incorporated in this compilation. Most of the data set consists of detection data entries (n = 79,343; 79.7%) but also includes non-detection data (n = 20,262; 20.3%). Of those, 43.3% also include count data (n = 43,151). The information available in NEOTROPICAL CARNIVORES will contribute to macroecological, ecological, and conservation questions in multiple spatio-temporal perspectives. As carnivores play key roles in trophic interactions, a better understanding of their distribution and habitat requirements are essential to establish conservation management plans and safeguard the future ecological health of Neotropical ecosystems. Our data paper, combined with other large-scale data sets, has great potential to clarify species distribution and related ecological processes within the Neotropics. There are no copyright restrictions and no restriction for using data from this data paper, as long as the data paper is cited as the source of the information used. We also request that users inform us of how they intend to use the data.

The bat fauna (Mammalia: Chiroptera) of Carlos Botelho State Park, Atlantic Forest of Southeastern Brazil, including new distribution records for the state of São Paulo

Carlos Botelho State Park (PECB) is a large remnant of Atlantic Forest in Southeastern Brazil, with more than 37,000 ha. As its bat fauna is still unknown, we performed the first bat survey on PECB, to provide data on the distribution, natural history and taxonomy of the species. Fieldwork was conducted monthly, from October 2016 to September 2017. Captures were made using ground-level mist-nets (39600 m2.h), canopy mist-nets (2017.5 m2.h) and searches for roosts (42 hours).We captured 412 bats from 34 species of Phyllostomidae, Molossidae and Vespertilionidae. A total of 11 species were captured only in ground-level mist-nets, five in canopy mist-nets, and seven in roosts. Dermanura cinerea Gervais, 1856, Eptesicus taddeii Miranda, Bernardi & Passos, 2006, Glyphonycteris sylvestris Thomas, 1896 and Lampronycteris brachyotis (Dobson, 1879) are rare on surveys conducted in the Atlantic Forest of São Paulo and were captured in canopy mist-nets. Micronycteris schmidtorum Sanborn, 1935 and Molossus currentium Thomas, 1901 constitute the first record for the state of São Paulo, and were captured in canopy mist-nets and roosts, respectively. The species richness registered for PECB surpasses other surveys conducted in Atlantic Forest localities that use only ground-level mist-nets. Our results reinforce the importance of employing mixed capture methods, such as elevated mist-nets and searches for roosts.

CAPIVARAS (Hydrochoerus hydrochaeris) E A PRESENÇA DO CARRAPATO (Amblyomma sculptum) NO CAMPUS DA UFSCAR-ARARAS, SÃO PAULO

Resumo Capivaras são territoriais e vivem em grupos sociais, ocorrendo comumente em áreas antropizadas. Em algumas regiões do Brasil, estes animais apresentam infestação por carrapatos do gênero Amblyomma, que por sua vez são considerados como principal vetor biológico e reservatório natural da bactéria Rickettsia rickettsii, agente causador da Febre Maculosa Brasileira. Na UFSCar campus Araras, a interação entre capivaras, carrapatos e comunidade acadêmica é frequente, ocorrendo principalmente durante a estação seca. Este estudo teve como objetivo realizar um censo populacional das capivaras que ocupam o campus, identificando sua área de uso e se estes roedores se encontravam infestados por carrapatos. Realizou-se observação direta das capivaras, captura-marcação e recaptura com uso de um brete, e também coleta dos carrapatos nas capivaras e no ambiente. Registrou-se um total de 56 capivaras, com densidade de 1,50 ind./ha. Foram capturados 24 animais, sendo 25% machos e 75% fêmeas, dos quais 25% eram adultos, 45,8% jovens e 29,2% filhotes. A espécie de carrapato amplamente encontrada infestando tanto os animais como o ambiente foi A. sculptum. Conclui-se que o grupo de capivaras apresentou um número elevado de indivíduos por causa da abundância de recursos e ausência de predadores, e também com grande infestação por carrapatos.