1
|
Brain-inspired semantic data augmentation for multi-style images. Front Neurorobot 2024; 18:1382406. [PMID: 38596181 PMCID: PMC11002076 DOI: 10.3389/fnbot.2024.1382406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 03/04/2024] [Indexed: 04/11/2024] Open
Abstract
Data augmentation is an effective technique for automatically expanding training data in deep learning. Brain-inspired methods are approaches that draw inspiration from the functionality and structure of the human brain and apply these mechanisms and principles to artificial intelligence and computer science. When there is a large style difference between training data and testing data, common data augmentation methods cannot effectively enhance the generalization performance of the deep model. To solve this problem, we improve modeling Domain Shifts with Uncertainty (DSU) and propose a new brain-inspired computer vision image data augmentation method which consists of two key components, namely, using Robust statistics and controlling the Coefficient of variance for DSU (RCDSU) and Feature Data Augmentation (FeatureDA). RCDSU calculates feature statistics (mean and standard deviation) with robust statistics to weaken the influence of outliers, making the statistics close to the real values and improving the robustness of deep learning models. By controlling the coefficient of variance, RCDSU makes the feature statistics shift with semantic preservation and increases shift range. FeatureDA controls the coefficient of variance similarly to generate the augmented features with semantics unchanged and increase the coverage of augmented features. RCDSU and FeatureDA are proposed to perform style transfer and content transfer in the feature space, and improve the generalization ability of the model at the style and content level respectively. On Photo, Art Painting, Cartoon, and Sketch (PACS) multi-style classification task, RCDSU plus FeatureDA achieves competitive accuracy. After adding Gaussian noise to PACS dataset, RCDSU plus FeatureDA shows strong robustness against outliers. FeatureDA achieves excellent results on CIFAR-100 image classification task. RCDSU plus FeatureDA can be applied as a novel brain-inspired semantic data augmentation method with implicit robot automation which is suitable for datasets with large style differences between training and testing data.
Collapse
|
2
|
Preclinical Evaluation of Tumor Treating Fields Combined with Personalized Ultra-Fractionated Stereotactic Adaptive Radiotherapy (PULSAR). Int J Radiat Oncol Biol Phys 2022. [DOI: 10.1016/j.ijrobp.2022.07.2115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
|
3
|
EP16.03-044 Genomic Evidence Depicting Clonal Evolution of Lung Adenosquamous Carcinoma. J Thorac Oncol 2022. [DOI: 10.1016/j.jtho.2022.07.1105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
|
4
|
A Structure Preservation and Denoising Low-Light Enhancement Model via Coefficient of Variation. INT J PATTERN RECOGN 2022. [DOI: 10.1142/s0218001422540180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
5
|
DNA Polymerase Iota (Pol ι) Promotes Radioresistance of Esophageal Squamous Cell Carcinoma through Blocking Ubiquitin-mediated RAD51 Degradation and Homologous Recombinational Repair after Radiation-induced DNA Damage. Int J Radiat Oncol Biol Phys 2020. [DOI: 10.1016/j.ijrobp.2020.07.2145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
6
|
Design of super-strong and thermally stable nanotwinned Al alloys via solute synergy. NANOSCALE 2020; 12:20491-20505. [PMID: 33026022 DOI: 10.1039/d0nr05707j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Al alloys have widespread industrial applications. However, their mechanical strength is often much lower than steels. Here, we investigate the influence of solutes on achieving ultrahigh strength and thermal stability of nanotwinned Al alloys. In situ micropillar compression tests show the addition of a small amount of Ti can significantly increase the mechanical strength of Al-Ni alloys to 2 GPa. Deformation induced detwinning, Ni segregation and grain coarsening as discovered in binary Al-Ni alloys are mostly absent in the ternary Al-Ni-Ti alloys. Moreover, the ternary Al-Ni-Ti alloys have outstanding thermal stability. Density function theory calculations reveal the synergetic pinning effect of Ni-Ti solute pairs on incoherent twin boundaries. This study demonstrates that the proper selection of synergistic solute pairs is critical to improve the thermal stability and mechanical properties of nanotwinned Al alloys.
Collapse
|
7
|
Abstract
Limits of the available model have, in the long term, challenged the studies of cancer-associated fibroblasts (CAFs) and their interplay with cancer stem cells, one of the key driving forces of patients with oral squamous cell carcinoma (OSCC). In the present study, the 3-dimensional organoid model was employed to investigate whether co-culture with paralleled CAFs promotes stem-like properties of OSCC. Experimentally, tumor organoids and paralleled CAFs were generated from patients with OSCC. Then, the CD44+ cells in organoids were sorted out by flow cytometry and co-cultured with CAFs in Matrigel. The results showed that co-culture with CAFs enhances the organoid-forming ability of CD44+ cells and that this effect was blocked when production or uptake of lactate in CAFs or CD44+ cells was inhibited. Furthermore, the expression levels of CD44 and OCT-4 were detected in organoids incubated with lactate, via immunofluorescence or Western blot assay. The results demonstrated that treatments with lactate promote the organoid-forming ability of CD44+ cells, as well as the expression of CD44 and OCT-4 at the protein level in OSCC organoids.
Collapse
|
8
|
Intraspecific Diversity and Taxonomy of Emmonsia crescens. Mycopathologia 2020; 185:613-627. [PMID: 32710392 DOI: 10.1007/s11046-020-00475-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 07/06/2020] [Indexed: 12/24/2022]
Abstract
Emmonsia crescens is known as an environmental pathogen causing adiaspiromycosis in small rodents. As the generic name Emmonsia is no longer available for this species, its taxonomic position is re-evaluated. The intraspecific variation of Emmonsia crescens was analyzed using molecular, morphological, and physiological data, and the relationship between frequency of adiaspiromycosis and body temperature of host animals was explored. A North American and a pan-global lineage could be discerned, each with subclusters at low genetic distance. European strains produced the classical type of very large adiaspores, while in the North American lineage adiaspores relatively small, resembling the broad-based budding cells of Blastomyces. Members of the closely related genus Emergomyces may exhibit large, broad-based in addition to small, narrow-based budding cells. We conclude that the morphology of the pathogenic phase in these fungi differs gradationally between species and even populations, and is therefore less suitable as a diagnostic criterion for generic delimitation. Two Emmonsia species are reclassified in Emergomyces.
Collapse
|
9
|
Thick grain boundary induced strengthening in nanocrystalline Ni alloy. NANOSCALE 2019; 11:23449-23458. [PMID: 31799538 DOI: 10.1039/c9nr06843k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Grain refinement has been extensively used to strengthen metallic materials for decades. Grain boundaries act as effective barriers to the transmission of dislocations, consequently leading to strengthening. Conventional grain boundaries have a thickness of 1-2 atomic layers, typically ∼0.5 nm for most metallic materials. Here, we report, however, the formation of ∼3 nm thick grain boundaries in a nanocrystalline Ni alloy. In situ micropillar compression studies coupled with molecular dynamics simulations suggest that the thick grain boundaries are stronger barriers than conventional grain boundaries to the transmission of dislocations. This study provides a fresh perspective for the design of high strength, deformable nanostructured metallic materials.
Collapse
|
10
|
Comparison of temperature dependent deformation mechanisms of 8YSZ thermal barrier coatings prepared by air-plasma-spray and D-gun thermal spray: An in situ study. Ann Ital Chir 2019. [DOI: 10.1016/j.jeurceramsoc.2019.04.020] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
11
|
Mandibular reconstruction using the deep circumflex iliac artery free flap: effect of the length of bone harvested on donor site morbidity. Br J Oral Maxillofac Surg 2019; 57:778-781. [PMID: 31350030 DOI: 10.1016/j.bjoms.2019.07.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Accepted: 07/10/2019] [Indexed: 11/17/2022]
Abstract
The aim of this study was to assess the amounts of pain and morbidity that are associated with the length of the harvested anterior iliac bone graft (cm), and their effect on the contour of the donor site and activities of daily life. A total of 62 patients who had mandibular reconstruction using an iliac bone graft were enrolled in this study at the Wuhan University Hospital. The same surgical standards were used throughout. We divided the patients into two groups depending to the length of the graft (<9cm or 9cm or more). The amount and duration of the pain, the time necessary to walk normally, abnormalities of sensation, contour of the donor site, length of the scar, and the patients' satisfaction with the donor site were evaluated, and outcomes in the two groups compared. The worst pain after operation (p=0.001) the length of the scar (p=0.001), and the time needed before the patients were able to walk (p=0.001) differed significantly between the two groups. There was no significant difference between the two groups regarding other complications. The anterior iliac crest might still be considered to be an ideal donor site for large mandibular defects.
Collapse
|
12
|
A Lighted Deep Convolutional Neural Network Based Fault Diagnosis of Rotating Machinery. SENSORS (BASEL, SWITZERLAND) 2019; 19:E2381. [PMID: 31137616 PMCID: PMC6566980 DOI: 10.3390/s19102381] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Revised: 05/17/2019] [Accepted: 05/21/2019] [Indexed: 12/04/2022]
Abstract
To improve the fault diagnosis performance for rotating machinery, an efficient, noise-resistant end-to-end deep learning (DL) algorithm is proposed based on the advantages of the wavelet packet transform in vibration signal processing (the capability to extract multiscale information and more spectral distribution features) and deep convolutional neural networks (good classification performance, data-driven design and high transfer-learning ability). First, a vibration signal is subjected to pyramid wavelet packet decomposition, and each sub-band coefficient is used as the input for each channel of a deep convolutional network (DCN). Then, based on the lightweight modeling requirements and techniques, a new DCN structure is designed for the fault diagnosis. The proposed algorithm is compared with the support vector machine algorithm and the published DL algorithms based on a bearing dataset produced by Case Western Reserve University. The experimental results show that the proposed algorithm is superior to the existing algorithms in terms of accuracy, memory space, computational complexity, noise resistance, and transfer performance, producing good results.
Collapse
|
13
|
Spectral-Spatial Sparse Subspace Clustering Based on Three-Dimensional Edge-Preserving Filtering for Hyperspectral Image. INT J PATTERN RECOGN 2019. [DOI: 10.1142/s0218001419550036] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Integrating spatial information into the sparse subspace clustering (SSC) models for hyperspectral images (HSIs) is an effective way to improve clustering accuracy. Since HSI is a three-dimensional (3D) cube datum, 3D spectral-spatial filtering becomes a simple method for extracting the spectral-spatial information. In this paper, a novel spectral-spatial SSC framework based on 3D edge-preserving filtering (EPF) is proposed to improve the clustering accuracy of HSI. First, the initial sparse coefficient matrix is obtained in the sparse representation process of the classical SSC model. Then, a 3D EPF is conducted on the initial sparse coefficient matrix to obtain a more accurate coefficient matrix by solving an optimization problem based on ADMM, which is used to build the similarity graph. Finally, the clustering result of HSI data is achieved by applying the spectral clustering algorithm to the similarity graph. Specifically, the filtered matrix can not only capture the spectral-spatial information but the intensity differences. The experimental results on three real-world HSI datasets demonstrated that the potential of including the proposed 3D EPF into the SSC framework can improve the clustering accuracy.
Collapse
|
14
|
Enhanced electromagnetic interference shielding and mechanical properties of foamed epoxy nanocomposites containing carbon nanofiber treated with silicone surfactant. J Appl Polym Sci 2018. [DOI: 10.1002/app.46833] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
|
15
|
Aggressive NK-cell leukemia: clinical subtypes, molecular features, and treatment outcomes. Blood Cancer J 2017; 7:660. [PMID: 29263371 PMCID: PMC5802497 DOI: 10.1038/s41408-017-0021-z] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Revised: 10/01/2017] [Accepted: 10/10/2017] [Indexed: 12/29/2022] Open
|
16
|
Learning the Distribution Preserving Semantic Subspace for Clustering. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2017; 26:5950-5965. [PMID: 28880174 DOI: 10.1109/tip.2017.2748885] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
This paper proposes a new clustering method for images called distribution preserving indexing (DPI). It aims to find a lower dimensional semantic space approximating the original image space in the sense of preserving the distribution of the data. In the theory, the intrinsic structure of the data clusters can be described by the distribution of the data effectively. Therefore, the cluster structure of the data in a lower dimensional semantic space derived by the DPI becomes clear. Unlike these distance-based clustering methods, which reveal the intrinsic Euclidean structure of data, our method attempts to discover the intrinsic cluster structure of the data space that actually is the union of some sub-manifolds. Moreover, we propose a revised kernel density estimator for the case of high-dimensional data, which is a crucial step in DPI. In addition, we provide a theoretical analysis of the bound of our method. Finally, the extensive experiments compared with other algorithms, on COIL20, CBCL, and MNIST demonstrate the effectiveness of our proposed approach.
Collapse
|
17
|
|
18
|
Adiponectin inhibits oxidization-induced differentiation of T helper cells through inhibiting costimulatory CD40 and CD80. ACTA ACUST UNITED AC 2017; 50:e6227. [PMID: 28513775 PMCID: PMC5479391 DOI: 10.1590/1414-431x20176227] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2016] [Accepted: 03/27/2017] [Indexed: 12/19/2022]
Abstract
Adiponectin is a multifunctional adipokine that has several oligomeric forms in the blood stream, which broadly regulates innate and acquired immunity. Therefore, in this study, we aimed to observe the differentiation of T helper (Th) cells and expression of costimulatory signaling molecules affected by adiponectin. The mRNA and protein expression levels of adiponectin and its receptors in oxidized low density lipoprotein cholesterol-treated endothelial cells were assayed by real time PCR and immunofluorescence. The endothelial cells were then treated with adiponectin with or without adipoR1 or adipoR2 siRNA and co-cultured with T lymphocytes. The distribution of Th1, Th2 and Th17 subsets were assayed by flow cytometry. The effects of adiponectin on costimulatory signaling molecules HLA-DR, CD80, CD86 and CD 40 was also assayed by flow cytometry. The results showed that endothelial cells expressed adiponectin and its receptor adipoR1 and adipoR2, but not T-cadherin. Adiponectin suppressed Th1 and Th17 differentiation through adipoR1 receptor, contributed to the inhibition of CD80 and CD40, and inhibited differentiation of Th1 and Th17 by inhibiting antigen presenting action.
Collapse
|
19
|
|
20
|
Comparing the evolutionary conservation between human essential genes, human orthologs of mouse essential genes and human housekeeping genes. Brief Bioinform 2015; 16:922-31. [DOI: 10.1093/bib/bbv025] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Indexed: 12/31/2022] Open
|
21
|
|
22
|
Assessment of heavy metals in surface sediments from Gansu section of Yellow River, China. ENVIRONMENTAL MONITORING AND ASSESSMENT 2015; 187:79. [PMID: 25655129 DOI: 10.1007/s10661-015-4328-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2014] [Accepted: 01/25/2015] [Indexed: 06/04/2023]
Abstract
The concentrations of Cu, Fe, Mn, Ni, Zn, Cr, Pb, and Cd in 28 samples collected from bottom sediments in the Gansu section of Yellow River, China, were investigated in order to evaluate their distribution and pollution level. The measured metals in the sediments were found to be in the range of Cu 15.52∼57.50 mg/kg, Fe 19593.24∼69963.42 mg/kg, Mn 472.70∼1491.67 mg/kg, Ni 5.10∼74.28 mg/kg, Zn 64.61∼173.83 mg/kg, Cr 57.68∼183.47 mg/kg, Pb 1.21∼28.36 mg/kg, and Cd 0.35∼4.25 mg/kg. The mean values of the heavy metal contents were arranged in the following decreasing order: Fe > Mn > Cr > Zn > Ni > Cu > Pb > Cd. There were significantly positive correlations between Cu, Fe, Mn, and Zn. However, principal component analysis (PCA) extracted two factors with Eigenvalues explaining 62.15 % of the total variance. Cu, Fe, Mn, Zn, and Cr had a natural origin controlled by the first factor. Ni and Pb could originate anthropogenic sources controlled by the second factor. Cd could be affected by natural geological background and human activity. It was attributed principally to anthropogenic activities that the geo-accumulation index, enrichment factor, and pollution load index of Cr were all higher than other measured metals. Zn appears to pose no risk at all of the sites of the system. The pollution class of sediment from the Gansu section in the upstream of Yellow River was 0∼1, from unpolluted to moderately polluted degree.
Collapse
|
23
|
|
24
|
Multi-Label Learning With Fuzzy Hypergraph Regularization for Protein Subcellular Location Prediction. IEEE Trans Nanobioscience 2014; 13:438-47. [DOI: 10.1109/tnb.2014.2341111] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
25
|
|
26
|
Similarity measure learning in closed-form solution for image classification. ScientificWorldJournal 2014; 2014:747105. [PMID: 25057510 PMCID: PMC4099089 DOI: 10.1155/2014/747105] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2014] [Revised: 05/20/2014] [Accepted: 05/23/2014] [Indexed: 11/18/2022] Open
Abstract
Adopting a measure is essential in many multimedia applications. Recently, distance learning is becoming an active research problem. In fact, the distance is the natural measure for dissimilarity. Generally, a pairwise relationship between two objects in learning tasks includes two aspects: similarity and dissimilarity. The similarity measure provides different information for pairwise relationships. However, similarity learning has been paid less attention in learning problems. In this work, firstly, we propose a general framework for similarity measure learning (SML). Additionally, we define a generalized type of correlation as a similarity measure. By a set of parameters, generalized correlation provides flexibility for learning tasks. Based on this similarity measure, we present a specific algorithm under the SML framework, called correlation similarity measure learning (CSML), to learn a parameterized similarity measure over input space. A nonlinear extension version of CSML, kernel CSML, is also proposed. Particularly, we give a closed-form solution avoiding iterative search for a local optimal solution in the high-dimensional space as the previous work did. Finally, classification experiments have been performed on face databases and a handwritten digits database to demonstrate the efficiency and reliability of CSML and KCSML.
Collapse
|
27
|
Correlation between
CCR
7 expression and lymph node metastatic potential of human tongue carcinoma. Oral Dis 2014; 21:123-31. [DOI: 10.1111/odi.12228] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2012] [Revised: 01/01/2014] [Accepted: 02/03/2014] [Indexed: 12/26/2022]
|
28
|
DNA-PKcs activates the Chk2-Brca1 pathway during mitosis to ensure chromosomal stability. Oncogenesis 2014; 3:e85. [PMID: 24492479 PMCID: PMC3940919 DOI: 10.1038/oncsis.2013.49] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2013] [Revised: 12/11/2013] [Accepted: 12/16/2013] [Indexed: 01/06/2023] Open
Abstract
The catalytic subunit of DNA-dependent protein kinase (DNA-PKcs) is known to have a critical role in DNA double-strand break repair. We have previously reported that DNA-PKcs is activated when cells enter mitosis and functions in mitotic spindle assembly and chromosome segregation. Here we report that DNA-PKcs is the upstream regulator of the Chk2-Brca1 pathway, which impacts microtubule dynamics, kinetochore attachment and chromosomal segregation in mitosis. Downstream from Chk2, Brca1 promotes monoubiquitination of γ-tubulin to inhibit microtubule nucleation and growth. We found that DNA-PKcs is essential for mitotic Chk2 phosphorylation at Thr68. As in Chk2- and Brca1-deficient cells, loss of DNA-PKcs resulted in chromosome misalignment and lagging during anaphase owing to elevation in microtubule dynamics. Importantly, these mitotic aberrations in DNA-PKcs-defective cells were alleviated by the overexpression of phosphomimetic Chk2 or Brca1 mutant proteins but not their wild-type counterparts. Taken together, these results demonstrate that DNA-PKcs regulates mitotic spindle organization and chromosomal instability via the Chk2-Brca1 signaling pathway.
Collapse
|
29
|
|
30
|
A visual-attention model using Earth Mover's Distance-based saliency measurement and nonlinear feature combination. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE 2013; 35:314-328. [PMID: 22641707 DOI: 10.1109/tpami.2012.119] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
This paper introduces a new computational visual-attention model for static and dynamic saliency maps. First, we use the Earth Mover's Distance (EMD) to measure the center-surround difference in the receptive field, instead of using the Difference-of-Gaussian filter that is widely used in many previous visual-attention models. Second, we propose to take two steps of biologically inspired nonlinear operations for combining different features: combining subsets of basic features into a set of super features using the Lm-norm and then combining the super features using the Winner-Take-All mechanism. Third, we extend the proposed model to construct dynamic saliency maps from videos by using EMD for computing the center-surround difference in the spatiotemporal receptive field. We evaluate the performance of the proposed model on both static image data and video data. Comparison results show that the proposed model outperforms several existing models under a unified evaluation setting.
Collapse
|
31
|
Comparison of adipose tissue cellularity in chicken lines divergently selected for fatness. Poult Sci 2011; 90:2024-34. [DOI: 10.3382/ps.2010-00863] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
|
32
|
Rediscovery of Halogen Bonds in Protein-Ligand Complexes. Mini Rev Med Chem 2010; 10:309-14. [DOI: 10.2174/138955710791331016] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2010] [Accepted: 04/17/2010] [Indexed: 11/22/2022]
|
33
|
Face recognition under varying illumination using gradientfaces. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2009; 18:2599-2606. [PMID: 19635700 DOI: 10.1109/tip.2009.2028255] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
In this correspondence, we propose a novel method to extract illumination insensitive features for face recognition under varying lighting called the Gradientfaces. Theoretical analysis shows Gradientfaces is an illumination insensitive measure, and robust to different illumination, including uncontrolled, natural lighting. In addition, Gradientfaces is derived from the image gradient domain such that it can discover underlying inherent structure of face images since the gradient domain explicitly considers the relationships between neighboring pixel points. Therefore, Gradientfaces has more discriminating power than the illumination insensitive measure extracted from the pixel domain. Recognition rates of 99.83% achieved on PIE database of 68 subjects, 98.96% achieved on Yale B of ten subjects, and 95.61% achieved on Outdoor database of 132 subjects under uncontrolled natural lighting conditions show that Gradientfaces is an effective method for face recognition under varying illumination. Furthermore, the experimental results on Yale database validate that Gradientfaces is also insensitive to image noise and object artifacts (such as facial expressions).
Collapse
|
34
|
Proposal for new best estimates of the soil-to-plant transfer factor of U, Th, Ra, Pb and Po. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2009; 100:721-32. [PMID: 19058886 DOI: 10.1016/j.jenvrad.2008.10.014] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2007] [Revised: 10/10/2008] [Accepted: 10/20/2008] [Indexed: 05/06/2023]
Abstract
There is increasing interest in radiological assessment of discharges of naturally occurring radionuclides into the terrestrial environment. Such assessments require parameter values for the pathways considered in predictive models. An important pathway for human exposure is via ingestion of food crops and animal products. One of the key parameters in environmental assessment is therefore the soil-to-plant transfer factor to food and fodder crops. The objective of this study was to compile data, based on an extensive literature survey, concerning soil-to-plant transfer factors for uranium, thorium, radium, lead, and polonium. Transfer factor estimates were presented for major crop groups (Cereals, Leafy vegetables, Non-leafy vegetables, Root crops, Tubers, Fruits, Herbs, Pastures/grasses, Fodder), and also for some compartments within crop groups. Transfer factors were also calculated per soil group, as defined by their texture and organic matter content (Sand, Loam, Clay and Organic), and evaluation of transfer factors' dependency on specific soil characteristics was performed following regression analysis. The derived estimates were compared with estimates currently in use.
Collapse
|
35
|
|
36
|
|
37
|
Experimental study on in vitro tumor cell killing by focused bi-frequency ultrasound activated hematoporphyrin derivatives. ACTA ACUST UNITED AC 2006; 29:267-71. [PMID: 17058589 DOI: 10.1007/bf03178576] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
OBJECTIVE As ultrasound has become an important therapeutic technique on tumor, in order to find the cell-killing effect of focused bi-frequency ultrasound activated hematoporphyrin derivatives, experimental study was processed in vitro. METHODS Tumor cells K562 and SW-480 were killed by focused bi-frequency ultrasound activated hematoporphyrin (Hp) derivatives under optimized ultrasonic parameters and the cell-killing effect was tested by MTT (Thiazolyl blue: 3-(4,5-Dimethyl-2-thiazolyl)-2,5-diphenyl-2H-tetrazolium bromide) technique. RESULTS The lower frequency (0.6 MHz) was better than the higher (1.1 MHz) in activating hematoporphyrin derivatives; the bi-frequency was better than mono-frequency, and the cell-killing efficiency was 2-3 times of sum of the two kinds of ultrasounds which constitute bi-frequency. Incubation for the 16 h was better than 4 h after the cells exposed to the ultrasound. CONCLUSION The method of killing tumor cells by focused bi-frequency ultrasound activated hematoporphyrin derivatives is presented and evaluated in this paper.
Collapse
|
38
|
[Kou Zongshi and his Amplification of classics of Shen Nong's Herbal] (Chi). ZHONGHUA YI SHI ZA ZHI (BEIJING, CHINA : 1980) 2001; 14:146-9. [PMID: 11611822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
|
39
|
[Differentiation of Ziyi Bencao as an apocrypha]. ZHONGHUA YI SHI ZA ZHI (BEIJING, CHINA : 1980) 2001; 26:54-5. [PMID: 11613286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
It is generally believed that Ziyi Bencao is a book of the pre-Qin period. By studies on several aspects, including ancient bibliographical records, relics unearthed in Mawangdui Han tombs, nomenclature of ancient book titles, the date of appearance of ancient classics, contradictions between the time of activities of Bian Que and Ziyi, it is concluded that, in the pre-Qin period, there were no classic of herbology of any kind, even less Ziyi Bencao. The books entitled Ziyi Bencao recorded in bibliographies after Han Dynasty are all apocryphas made by Han authors.
Collapse
|
40
|
[Differential analyses on the historical relationship between Zhenglei bencao (herbology of classified syndromes) and Mingyi Bie Lu (appendant records of famous physicians)]. ZHONGHUA YI SHI ZA ZHI (BEIJING, CHINA : 1980) 2001; 24:38-40. [PMID: 11615227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
This author claims that, by using the approach of "inclusion of all canons", Tao Hongjing incorporated the 365 kinds of drugs from the earliest canon "Shen Nong's Herbological Canon" with another 365 kinds of "subordinated drugs from famous physicians", including Wu Pu and Li Dangzhi etc. to compile his 7-volume "Collected variorum of herbological canon". Owing to the changes and modifications made on the term "subordinated drugs from famous physicians" by the prefaces of herbological works of successive ages, the misunderstandings that the other 365 appendant kinds of drug were derived from an available Ming Yi Bie Lu and that the preface by Tao Yinju of the Liang Dynasty in Zhenglei Bencao was the preface of the book Mingyi Bielu were thuw formed.
Collapse
|
41
|
[Ultrasonic measurement of the elastic properties of goat condyles]. HUA XI KOU QIANG YI XUE ZA ZHI = HUAXI KOUQIANG YIXUE ZAZHI = WEST CHINA JOURNAL OF STOMATOLOGY 2001; 19:83-5. [PMID: 12539417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/28/2023]
Abstract
OBJECTIVE The purpose of this experiment is to investigate the elastic properties of goat mandibular condyles and to provide basic constants for biomechanical study of temporomandibular joint. METHODS A fresh goat mandible was adopted and the standard condyle specimen of 4 mm x 6 mm x 10 mm was obtained from it. The structure density of the condyle was determined according to Archimede's principle. The transmitting velocities of ultrasonic wave in different directions of goat condyles were measured by using the ultrasonic system, which was composed of a transmitting transducer of 1.25 MHz, a receiving transducer of 2.5 MHz, an ultrasonic analyzer (5052UA) and a digital storage oscilloscope (HP54601A). The elastic coefficients and technical constants could be calculated by elastic equations. RESULTS The structural density of the sample and the wave velocities in different directions of the condyle were both obtained by direct measurement. And then, nine elastic coefficients and all of the technical constants of orthotropic condyles were calculated. CONCLUSION 1. It is practicable to measure elastic properties of the condyle by using ultrasonic technique. 2. Goat condyles of the mandible are a type of anisotropic and linearly elastic material. 3. The direction perpendicular to the transverse ridge of the goat condyle has the highest Young's modulus. As to shear modulus, the direction along the transverse ridge shows the highest value.
Collapse
|
42
|
On the direction and magnitude of radical substituent effects: the role of polar interaction on thermodynamic stabilities of benzylic C-H bonds and related carbon radicals. J Org Chem 2001; 66:1466-72. [PMID: 11312981 DOI: 10.1021/jo001668z] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The C-H bond dissociation enthalpies (BDEs) of polarized benzylic molecules, i.e., para-substituted phenylacetonitriles (PANs), and the spin variations of the radicals of the general type p-GC6H4CH*-Y were investigated using density functional theory (DFT) calculations. In contrast to the commonly observed S-type substituent effect (see text), the present work shows that there should be three (rather than one) primary patterns (i.e., S, O, and counter-O) for remote G to affect spin and radical stability, depending upon the polarity of the alpha-Y group. Correlation analyses reveal that both the direction and magnitude of spin/radical effects are quantitatively related to the intensity of polar interaction in radical system, as registered by either the calculated group charges of the phenyl ring (C(Ph)) or by the polar constant sigma(+)s (Figures 1-4). A unified platform (Scheme 1) to rationalize the apparent differences of radical substituent effect is proposed.
Collapse
|
43
|
Abstract
In 1985 an analysis of the Escherichia coli 16 S rRNA covariation-based structure model revealed a strong bias for unpaired adenosines. The same analysis revealed that the majority of the G, C, and U bases were paired. These biases are (now) consistent with the high percentage of unpaired adenosine nucleotides in several structure motifs. An analysis of a larger set of bacterial comparative 16 S and 23 S rRNA structure models has substantiated this initial finding and revealed new biases in the distribution of adenosine nucleotides in loop regions. The majority of the adenosine nucleotides are unpaired, while the majority of the G, C, and U bases are paired in the covariation-based structure model. The unpaired adenosine nucleotides predominate in the middle and at the 3' end of loops, and are the second most frequent nucleotide type at the 5' end of loops (G is the most common nucleotide). There are additional biases for unpaired adenosine nucleotides at the 3' end of loops and adjacent to a G at the 5' end of the helix. The most prevalent consecutive nucleotides are GG, GA, AG, and AA. A total of 70 % of the GG sequences are within helices, while more than 70 % of the AA sequences are unpaired. Nearly 50 % of the GA sequences are unpaired, and approximately one-third of the AG sequences are within helices while another third are at the 3' loop.5' helix junction. Unpaired positions with an adenosine nucleotide in more than 50 % of the sequences at the 3' end of 16 S and 23 S rRNA loops were identified and arranged into the A-motif categories XAZ, AAZ, XAG, AAG, and AAG:U, where G or Z is paired, G:U is a base-pair, and X is not an A and Z is not a G in more than 50 % of the sequences. These sequence motifs were associated with several structural motifs, such as adenosine platforms, E and E-like loops, A:A and A:G pairings at the end of helices, G:A tandem base-pairs, GNRA tetraloop hairpins, and U-turns.
Collapse
MESH Headings
- Adenosine/genetics
- Adenosine/metabolism
- Bacteria/genetics
- Base Composition
- Base Pairing
- Base Sequence
- Computational Biology
- Introns/genetics
- Molecular Sequence Data
- RNA, Ribosomal/chemistry
- RNA, Ribosomal/genetics
- RNA, Ribosomal/metabolism
- RNA, Ribosomal, 16S/chemistry
- RNA, Ribosomal, 16S/genetics
- RNA, Ribosomal, 16S/metabolism
- RNA, Ribosomal, 23S/chemistry
- RNA, Ribosomal, 23S/genetics
- RNA, Ribosomal, 23S/metabolism
- Sequence Alignment
- Software
Collapse
|
44
|
[Discussion on sources of texts of Meng Sheng's Herbology of dietotherapy cited in Jinling edition of Compendium of materia medica]. ZHONGHUA YI SHI ZA ZHI (BEIJING, CHINA : 1980) 2000; 30:166-8. [PMID: 11624691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
Most of the citations of Meng Sheng's Herbology of Dietotherapy in Compendium of Materia Medica are originated from the Daguan Herbology and Zhenghe Herbology. When comparing these sources of citations in Compendium of Materia Medica with the texts in Daguan and Zhenghe, it can be found that there are differences, In Compendium of Materia Medica, it is indicated that these sources marked "Meng Sheng's Herbology of Dietotherapy" are actually derived from other sources, while citations from other sources are marked "Meng Sheng's Herbology of Dietotherapy" which are not found in Classified Herbology (Zhenglei ben cao). This might be due to the editions of Daguan and Zhenghe Li Shizhen applied are different.
Collapse
|
45
|
[Discassion on the date of appearance of the title Shen nong ben caojing (Shennong's Herbal Classic)]. ZHONGHUA YI SHI ZA ZHI (BEIJING, CHINA : 1980) 1999; 29:135-8. [PMID: 11624095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
It is said, in general literatures, that the title of shen nong ben cao jing appeared in pre- Qin period. It can be negated, through studies on Han shu yi wen zhi (Biblie - graphies in Book of Han Dynasty), relics unearthed from Han tombs in Mawangdui, the history of nomencleture for ancient books, and the date of appearance of ancient canons, that the said - title first appeared in the pre - Qin period. The name of "ben cao" was first appeared in western Han dynasty. There were officials of necromaneer (fan shi) and ben cao in western Han dynasty. During Chengdi Emperor of Han, some seventy such officials were dismissed and returned to their homelands. Pingdi Emperor re-summoned these officials. Several scores of officials responded to the edict, among them, those responsible for ben cao complied a book on ben cao (herbology) and alleged it to be written by shennong so as to win confidence with the authority and to acquire the official title of ben cao dai zhao (Herbal Attendant) for themselves. It is, therefore, natural that the title of shen nong ben cao jing can only have appeared at the time of Herbal Attendant in Western Han dynasty.
Collapse
|
46
|
Study on the difference between Shennong's drug nature quoted by Wu Puu and by Shennong's drug in material medical in classified syndromes (Zheng). ZHONGHUA YI SHI ZA ZHI (BEIJING, CHINA : 1980) 1998; 28:161-4. [PMID: 11620485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
Several questions were mentioned through the analysis and comparison of "Shennong's drug nature" (DN) as quoted by Wu Pu's Meteria Madica (WP) and Materia Medica of Classified Syndrome (Zheng) (ZL). These include: (1) The DN in ZL are incomplete, the "toxic nontoxic" terms were absent here; (2) There were different editions of ancient "Shennong's Canon of Materia Medica", carrying different numbers of drugs, including 365 kinds, 595, 441, 319 kinds respectively; (3) some of the drugs indicated as DN were, strangely, indicated as "drugs of supplemented Records" in ZL.
Collapse
|
47
|
Abstract
Endotoxin was removed by affinity membranes with histidine immobilized as affinity ligand. Macropore cellulose membrane was prepared from filter paper by alkaline treatment and chemical crosslinking, and was used as matrix for the immobilization of affinity ligand. The matrix membrane was derived by hexamethylenediamine and activated by glutaraldehyde before histidine was immobilized. Membrane cartridges containing 40 or 80 sheets of affinity membrane were also prepared, which can be used to remove pyrogen from aqueous solutions. Using a cartridge with 40 sheets of affinity membrane, the endotoxin content in solution can be reduced to a minimum of 0.12 EU/mL.
Collapse
|
48
|
Application of multiple-quantum line narrowing with simultaneous 1H and 13C constant-time scalar-coupling evolution in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments. JOURNAL OF BIOMOLECULAR NMR 1997; 9:105-111. [PMID: 20683762 DOI: 10.1023/a:1018683920602] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Many triple-resonance experiments make use of one-bond heteronuclear scalar couplings toestablish connectivities among backbone and/or side-chain nuclei. In medium-sized(15-30 kDa) proteins, short transverse relaxation times of Calpha single-quantum stateslimit signal-to-noise (S/N) ratios. These relaxation properties can be improved usingheteronuclear multiple-quantum coherences (HMQCs) instead of heteronuclear single-quantumcoherences (HSQCs) in the pulse sequence design. In slowly tumbling macromolecules, theseHMQCs can exhibit significantly better transverse relaxation properties than HSQCs.However, HMQC-type experiments also exhibit resonance splittings due to multiple two- andthree-bond homo- and heteronuclear scalar couplings. We describe here a family of pulsed-field gradient (PFG) HMQC-type triple-resonance experiments using simultaneous 1H and13C constant-time (CT) periods to eliminate the t1 dependence of these scalar couplingeffects. These simultaneous CT PFG-(HA)CANH and PFG-(HA)CA(CO)NH HMQC-typeexperiments exhibit sharper resonance line widths and often have better S/N ratios than thecorresponding HSQC-type experiments. Results on proteins ranging in size from 6 to 30 kDashow average methine CalphaH HMQC:HSQC enhancement factors of 1.10 +/- 0.15, withabout 40% of the cross peaks exhibiting better S/N ratios in the simultaneous CT-HMQCversions compared with the HSQC versions.
Collapse
|
49
|
Phase labeling of C-H and C-C spin-system topologies: application in constant-time PFG-CBCA(CO)NH experiments for discriminating amino acid spin-system types. JOURNAL OF BIOMOLECULAR NMR 1996; 8:345-350. [PMID: 8953221 DOI: 10.1007/bf00410332] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Triple-resonance experiments facilitate the determination of sequence-specific resonance assignments of medium-sized 13C,15N-enriched proteins. Some triple-resonance experiments can also be used to obtain information about amino acid spin-system topologies by proper delay tuning. The constant-time PFG-CBCA(CO)NH experiment allows discrimination between five different groups of amino acids by tuning (phase labeling) independently the delays for proton-carbon refocusing and carbon-carbon constant-time frequency labeling. The proton-carbon refocusing delay allows discrimination of spin-system topologies based on the number of protons attached to C alpha and C beta atoms (i.e. C-H phase labeling). In addition, tuning of the carbon-carbon constant-time frequency-labeling delay discriminates topologies based on the number of carbons directly coupled to C alpha and C beta atoms (i.e. C-C phase labeling). Classifying the spin systems into these five groups facilitates identification of amino acid types, making both manual and automated analysis of assignments easier. The use of this pair of optimally tuned PFG-CBCA(CO)NH experiments for distinguishing five spin-system topologies is demonstrated for the 124-residue bovine pancreatic ribonuclease A protein.
Collapse
|
50
|
[Investigation on the various species of bulb of fritillary and its application]. ZHONGHUA YI SHI ZA ZHI (BEIJING, CHINA : 1980) 1995; 25:38-42. [PMID: 11639635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Abstract
Through studies on ancient herbological works, it is claimed that the fritillary recorded in the Classic of Poet, Shennong's Herbology is not identical with the fritillary applied today. It belongs to Balbostemma paiculatum (Maxim). Frang of Cucurbitacea. Ming Yi Bie Lu is the earliest book that includes the fritillary of Lilliae as a remedy, with its species Fritillaria thunbergii mig. It can be sure that this should include the latter species. The fritillaria of Sichuan makes its appearance in Ben Cao Hui Yan of the Ming dynasty. It is derived from F. unibracteata et K. C. Hsia and F. cirrkosa D. Don.
Collapse
|