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Salvá L, García S, García-Delpech S, Martínez-Espert A, Montagud-Martínez D, Ferrando V. Comparison of the Polychromatic Image Quality of Two Refractive-Segmented and Two Diffractive Multifocal Intraocular Lenses. J Clin Med 2023; 12:4678. [PMID: 37510792 PMCID: PMC10380361 DOI: 10.3390/jcm12144678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Revised: 07/11/2023] [Accepted: 07/12/2023] [Indexed: 07/30/2023] Open
Abstract
Evaluating chromatic aberration for a multifocal intraocular lens (MIOL) in vitro is essential for studying its performance because it helps determine the most appropriate lens for each patient, enhancing surgical outcomes. While refractive MIOLs with angular power variation have shown positive clinical outcomes, studies of these MIOLs on optical benches primarily employed monochromatic green light, neglecting the impact of longitudinal chromatic aberration (LCA) on MIOL performance. To address this gap, we evaluated the through-focus modulation transfer function (TF-MTF) and the point spread function (PSF) of two refractive segmented extended depth of focus intraocular lenses (IOLs) (Femtis Comfort and Precizon Presbyopic), comparing the results with those obtained with two widely known diffractive multifocal intraocular lenses (AcrySof IQ ReSTOR and FineVision Pod F). Measurements of the TF-MTF were conducted using both monochromatic and polychromatic light in a customized optical bench. The refractive designs exhibited distinct haloes in the PSFs. When comparing the refractive and diffractive designs, opposite signs of LCA were observed at near foci. These findings emphasize the influence of the optical design of IOLs on their performance under polychromatic light, providing valuable information for vision care professionals when selecting the most suitable lens for each patient.
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Affiliation(s)
- Luis Salvá
- Oftalmedic Salvà, 07013 Palma de Mallorca, Spain
| | - Scott García
- Oftalmedic Salvà, 07013 Palma de Mallorca, Spain
| | | | - Anabel Martínez-Espert
- Departamento de Óptica, Optometría y CC de la Visión, Universitat de València, 46100 Valencia, Spain
| | - Diego Montagud-Martínez
- Departamento de Óptica, Optometría y CC de la Visión, Universitat de València, 46100 Valencia, Spain
- Centro de Tecnologías Físicas, Universitat Politècnica de València, 46022 Valencia, Spain
| | - Vicente Ferrando
- Centro de Tecnologías Físicas, Universitat Politècnica de València, 46022 Valencia, Spain
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Jiang C, Tovar CM, Staasmeyer JH, Friedrichs M, Grunwald T, Bergs T. Simulation of the Refractive Index Variation and Validation of the Form Deviation in Precisely Molded Chalcogenide Glass Lenses (IRG 26) Considering the Stress and Structure Relaxation. Materials (Basel) 2022; 15:6756. [PMID: 36234096 PMCID: PMC9572466 DOI: 10.3390/ma15196756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 09/19/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
Precise infrared (IR) optics are core elements of infrared cameras for thermal imaging and night vision applications and can be manufactured directly or using a replicative process. For instance, precision glass molding (PGM) is a replicative manufacturing method that meets the demand of producing precise and accurate glass optics in a cost-efficient manner. However, several iterations in the PGM process are applied to compensate the induced form deviation and the index drop after molding. The finite element method (FEM) is utilized to simulate the thermomechanical process, predicting the optical properties of molded chalcogenide lenses and thus preventing costly iterations. Prior to FEM modelling, self-developed glass characterization methods for the stress and structure relaxation of chalcogenide glass IRG 26 are implemented. Additionally, a ray-tracing method is developed in this work to calculate the optical path difference (OPD) based on the mesh structure results from the FEM simulation. The developed method is validated and conducted during the production of molded lenses.
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Affiliation(s)
- Cheng Jiang
- Department of Fine Machining and Optics, Fraunhofer Institute for Production Technology IPT, 52074 Aachen, Germany
| | - Carlos Marin Tovar
- Department of Fine Machining and Optics, Fraunhofer Institute for Production Technology IPT, 52074 Aachen, Germany
| | - Jan-Helge Staasmeyer
- Department of Fine Machining and Optics, Fraunhofer Institute for Production Technology IPT, 52074 Aachen, Germany
| | - Marcel Friedrichs
- Department of Fine Machining and Optics, Fraunhofer Institute for Production Technology IPT, 52074 Aachen, Germany
| | - Tim Grunwald
- Department of Fine Machining and Optics, Fraunhofer Institute for Production Technology IPT, 52074 Aachen, Germany
| | - Thomas Bergs
- Department of Fine Machining and Optics, Fraunhofer Institute for Production Technology IPT, 52074 Aachen, Germany
- Laboratory for Machine Tools and Production Engineering (WZL), RWTH Aachen University, 52074 Aachen, Germany
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Ali R, Brevett T, Hyun D, Brickson LL, Dahl JJ. Distributed Aberration Correction Techniques Based on Tomographic Sound Speed Estimates. IEEE Trans Ultrason Ferroelectr Freq Control 2022; 69:1714-1726. [PMID: 35353699 PMCID: PMC9164761 DOI: 10.1109/tuffc.2022.3162836] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Phase aberration is widely considered a major source of image degradation in medical pulse-echo ultrasound. Traditionally, near-field phase aberration correction techniques are unable to account for distributed aberrations due to a spatially varying speed of sound in the medium, while most distributed aberration correction techniques require the use of point-like sources and are impractical for clinical applications where diffuse scattering is dominant. Here, we present two distributed aberration correction techniques that utilize sound speed estimates from a tomographic sound speed estimator that builds on our previous work with diffuse scattering in layered media. We first characterize the performance of our sound speed estimator and distributed aberration correction techniques in simulations where the scattering in the media is known a priori. Phantom and in vivo experiments further demonstrate the capabilities of the sound speed estimator and the aberration correction techniques. In phantom experiments, point target resolution improves from 0.58 to 0.26 and 0.27 mm, and lesion contrast improves from 17.7 to 23.5 and 25.9 dB, as a result of distributed aberration correction using the eikonal and wavefield correlation techniques, respectively.
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Ali R, Telichko AV, Wang H, Sukumar UK, Vilches-Moure JG, Paulmurugan R, Dahl JJ. Local Sound Speed Estimation for Pulse-Echo Ultrasound in Layered Media. IEEE Trans Ultrason Ferroelectr Freq Control 2022; 69:500-511. [PMID: 34723801 PMCID: PMC9127706 DOI: 10.1109/tuffc.2021.3124479] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Our previous methodology in local sound speed estimation utilized time delays measured by the cross correlation of delayed full-synthetic aperture channel data to estimate the average speed of sound. However, focal distortions in this methodology lead to biased estimates of the average speed of sound, which, in turn, leads to biased estimates of the local speed of sound. Here, we demonstrate the bias in the previous methodology and introduce a coherence-based average sound speed estimator that eliminates this bias and is computationally much cheaper in practice. Because this coherence-based approach estimates the average sound speed in the medium over an equally spaced grid in depth rather than time, we derive a refined model that relates the local and average speeds of sound as a function of depth in layered media. A fast, closed-form inversion of this model yields highly accurate local sound speed estimates. The root-mean-square (rms) error of local sound speed reconstruction in simulations of two-layer media is 4.6 and 2.5 m/s at 4 and 8 MHz, respectively. This work examines the impact of frequency, f -number, aberration, and reverberation on sound speed estimation. Phantom and in vivo experiments in rats further validate the coherence-based sound speed estimator.
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Hou M, Pantelic J, Aviv D. Spatial analysis of the impact of UVGI technology in occupied rooms using ray-tracing simulation. Indoor Air 2021; 31:1625-1638. [PMID: 33772881 DOI: 10.1111/ina.12827] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 02/25/2021] [Accepted: 03/14/2021] [Indexed: 06/12/2023]
Abstract
The use of Ultraviolet Germicidal Irradiation (UVGI) devices in the upper zones of occupied buildings has gained increased attention as one of the most effective mitigation technologies for the transmission of COVID-19. To ensure safe and effective use of upper-room UVGI, it is necessary to devise a simulation technique that enables engineers, designers, and users to explore the impact of different design and operational parameters. We have developed a simulation technique for calculating UV-C fluence rate within the volume of the upper zone and planar irradiance in the lower occupied zone. Our method is based on established ray-tracing light simulation methods adapted to the UV-C wavelength range. We have included a case study of a typical hospital patient room. In it, we explored the impact of several design parameters: ceiling height, device location, room configuration, proportions, and surface materials. We present a spatially mapped parametric study of the UV-C irradiance distribution in three dimensions. We found that the ceiling height and mounting height of the UVGI fixtures combined can cause the largest variation (up to 22%) in upper zone fluence rate. One of the most important findings of this study is that it is crucial to consider interreflections in the room. This is because surface reflectance is the design parameter with the largest impact on the occupant exposure in the lower zone: Applying materials with high reflectance ratio in the upper portion of the room has the highest negative impact (over 700% variation) on increasing hot spots that may receive over 6 mJ/cm2 UV dose in the lower occupied zone.
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Affiliation(s)
- Miaomiao Hou
- University of Pennsylvania, Philadelphia, PA, USA
- Tongji University, Shanghai, China
| | - Jovan Pantelic
- University of California, Berkeley, CA, USA
- KU Leuven, Leuven, Belgium
| | - Dorit Aviv
- University of Pennsylvania, Philadelphia, PA, USA
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Varshney N, Wang J, Lai C, Gentile C, Charbonnier R, Corre Y. Quasi-Deterministic Channel Propagation Model for an Urban Environment at 28 GHz. IEEE Antennas Wirel Propag Lett 2021; 20:10.1109/lawp.2021.3073880. [PMID: 37719441 PMCID: PMC10502687 DOI: 10.1109/lawp.2021.3073880] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/19/2023]
Abstract
We reduced the parameters of the Quasi-Deterministic channel propagation model, recently adopted by the IEEE 802.11ay task group for next-generation Wi-Fi at millimeter-wave (mmWave), from measurements collected in an urban environment with our 28 GHz switched-array channel sounder. In the process-as a novel contribution-we extended the clustering of channel rays from the conventional delay and angle domains to the location domain of the receiver, over which the measurements were collected. By comparing channel realizations from the model to realizations from a leading commercial ray-tracer, we demonstrated that the model effects no detriment to accuracy while maintaining the benefit of significantly reduced complexity.
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Affiliation(s)
- Neeraj Varshney
- National Institute of Standards and Technology, Gaithersburg, MD 20899 USA
| | - Jian Wang
- National Institute of Standards and Technology, Gaithersburg, MD 20899 USA
| | - Chiehping Lai
- National Institute of Standards and Technology, Gaithersburg, MD 20899 USA
| | - Camillo Gentile
- National Institute of Standards and Technology, Gaithersburg, MD 20899 USA
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Brumund P, Reyes-Herrera J, Detlefs C, Morawe C, Sanchez Del Rio M, Chumakov AI. Design simulations of a horizontally deflecting high-heat-load monochromator. J Synchrotron Radiat 2021; 28:91-103. [PMID: 33399557 DOI: 10.1107/s1600577520014009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Accepted: 10/20/2020] [Indexed: 06/12/2023]
Abstract
The performance of a liquid-nitrogen-cooled high-heat-load monochromator with a horizontal scattering plane has been analysed, aiming to preserve the high quality of the X-ray beam in the vertical plane for downstream optics. Using finite-element analysis, height profiles of the crystal surface for various heat loads and the corresponding slope errors in the meridional and sagittal planes were calculated. Then the angular distortions of the reflected beam in both meridional and sagittal planes were calculated analytically and also modelled by ray tracing, revealing a good agreement of the two approaches. The results show that with increasing heat load in the crystal the slope errors of the crystal surface reach their smallest values first in the sagittal and then in the meridional plane. For the considered case of interest at a photon energy of 14.412 keV and the Si(111) reflection with a Bragg angle of 7.88°, the angular distortions of the reflected beam in the sagittal plane are an order of magnitude smaller than in the meridional one. Furthermore, they are smaller than the typical angular size of the beam source at the monochromator position. For a high-heat-load monochromator operating in the horizontal scattering plane, the sagittal angular distortions of the reflected beam appear in the vertical plane. Thus, such an instrument perfectly preserves the high quality of the X-ray beam in the vertical plane for downstream optics. Compared with vertical scattering, the throughput of the monochromatic beam with the horizontal scattering plane is reduced by only 3.3% for the new EBS source, instead of 34.3% for the old ESRF-1 machine. This identifies the horizontal-scattering high-heat-load monochromator as a device essentially free of the heat-load effects in the vertical plane and without significant loss in terms of throughput.
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Affiliation(s)
- Philipp Brumund
- ESRF - The European Synchrotron, 38043 Grenoble Cedex 9, France
| | | | - Carsten Detlefs
- ESRF - The European Synchrotron, 38043 Grenoble Cedex 9, France
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Debaenst W, Feys A, Cuiñas I, García Sánchez M, Verhaevert J. RMS Delay Spread vs. Coherence Bandwidth from 5G Indoor Radio Channel Measurements at 3.5 GHz Band. Sensors (Basel) 2020; 20:s20030750. [PMID: 32013241 PMCID: PMC7038510 DOI: 10.3390/s20030750] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Revised: 01/20/2020] [Accepted: 01/27/2020] [Indexed: 11/16/2022]
Abstract
Our society has become fully submersed in fourth generation (4G) technologies, setting constant connectivity as the norm. Together with self-driving cars, augmented reality, and upcoming technologies, the new generation of Internet of Things (IoT) devices is pushing the development of fifth generation (5G) communication systems. In 5G architecture, increased capacity, improved data rate, and decreased latency are the objectives. In this paper, a measurement campaign is proposed; we focused on studying the propagation properties of microwaves at a center frequency of 3.5 GHz, commonly used in 5G cellular networks. Wideband measurement data were gathered at various indoor environments with different dimensions and characteristics. A ray-tracing analysis showed that the power spectrum is dominated by the line of sight component together with reflections on two sidewalls, indicating the practical applicability of our results. Two wideband parameters, root mean square delay spread and coherence bandwidth, were estimated for the considered scenarios, and we found that they are highly dependent on the physical dimension of the environment rather than on furniture present in the room. The relationship between both parameters was also investigated to provide support to network planners when obtaining the bandwidth from the delay spread, easily computed by a ray-tracing tool.
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Affiliation(s)
- Wout Debaenst
- Department of Signal Theory and Communications-atlanTTic Research Center, University of Vigo, 36310 Vigo, Spain; (W.D.); (A.F.); (I.C.); (M.G.S.)
- IDLab, Department of Information Technology, Ghent University-imec, 9052 Gent, Belgium
| | - Arne Feys
- Department of Signal Theory and Communications-atlanTTic Research Center, University of Vigo, 36310 Vigo, Spain; (W.D.); (A.F.); (I.C.); (M.G.S.)
- IDLab, Department of Information Technology, Ghent University-imec, 9052 Gent, Belgium
| | - Iñigo Cuiñas
- Department of Signal Theory and Communications-atlanTTic Research Center, University of Vigo, 36310 Vigo, Spain; (W.D.); (A.F.); (I.C.); (M.G.S.)
| | - Manuel García Sánchez
- Department of Signal Theory and Communications-atlanTTic Research Center, University of Vigo, 36310 Vigo, Spain; (W.D.); (A.F.); (I.C.); (M.G.S.)
| | - Jo Verhaevert
- IDLab, Department of Information Technology, Ghent University-imec, 9052 Gent, Belgium
- Correspondence:
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Firdaus F, Ahmad NA, Sahibuddin S. Accurate Indoor-Positioning Model Based on People Effect and Ray-Tracing Propagation. Sensors (Basel) 2019; 19:E5546. [PMID: 31847488 DOI: 10.3390/s19245546] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 12/06/2019] [Accepted: 12/11/2019] [Indexed: 11/22/2022]
Abstract
Wireless local area networks (WLAN)-fingerprinting has been highlighted as the preferred technology for indoor positioning due to its accurate positioning and minimal infrastructure cost. However, its accuracy is highly influenced by obstacles that cause fluctuation in the signal strength. Many researchers have modeled static obstacles such as walls and ceilings, but few studies have modeled the people’s presence effect (PPE), although the human body has a great impact on signal strength. Therefore, PPE must be addressed to obtain accurate positioning results. Previous research has proposed a model to address this issue, but these studies only considered the direct path signal between the transmitter and the receiver whereas multipath effects such as reflection also have a significant influence on indoor signal propagation. This research proposes an accurate indoor-positioning model by considering people’s presence and multipath using ray-tracing, we call it (AIRY). This study proposed two solutions to construct AIRY: an automatic radio map using ray tracing and a constant of people’s effect for the received signal strength indicator (RSSI) adaptation. The proposed model was simulated using MATLAB software and tested at Level 3, Menara Razak, Universiti Teknologi Malaysia. A K-nearest-neighbor (KNN) algorithm was used to define a position. The initial accuracy was 2.04 m, which then reduced to 0.57 m after people’s presence and multipath effects were considered.
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Cheng J, Cheng X, Meng X, Zhou G. A Monte Carlo Emissivity Model for Wind-Roughened Sea Surface. Sensors (Basel) 2019; 19:E2166. [PMID: 31083293 DOI: 10.3390/s19092166] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Revised: 05/05/2019] [Accepted: 05/08/2019] [Indexed: 11/22/2022]
Abstract
Sea surface emissivity (SSE) is a key variable in the estimation of sea surface temperature and the sea surface radiation budget. A physical base SSE model with adequate accuracy and acceptable computational efficiency is highly desired. This paper develops a Monte Carlo ray-tracing model to compute the SSE of a wind-roughened sea surface. The adoption of a two-dimensional continuous surface model and averaging the two polarization components in advance before ray-tracing gives the model acceptable computational efficiency. The developed model can output the contributions of direct emission and the reflected component to the effective emissivity. The contribution of the reflected component to the effective emissivity reaches 0.035 at an 80° emission angle for a wind speed larger than 10 m/s. The emissivity spectra and channel emissivities collected from two field campaigns and one set of outdoor measurements are used to validate the developed model. Statistical results indicate that the absolute value of bias or difference is less than 0.5% when the view angle is less than 65°, which means the retrieval accuracy of sea surface temperature (SST) is guaranteed from the view of SSE. When the view angle increases, the accuracy of the developed model degraded, especially at the view angle of 85°. Without considering this view angle, the absolute value of bias or difference is less than 0.016, and the root mean square difference (RMSD) is less than 0.018.
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Chitambira B, Armour S, Wales S, Beach M. Employing Ray-Tracing and Least-Squares Support Vector Machines for Localisation. Sensors (Basel) 2018; 18:E4059. [PMID: 30463397 DOI: 10.3390/s18114059] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2018] [Revised: 11/13/2018] [Accepted: 11/17/2018] [Indexed: 11/23/2022]
Abstract
This article evaluates the use of least-squares support vector machines, with ray-traced data, to solve the problem of localisation in multipath environments. The schemes discussed concern 2-D localisation, but could easily be extended to 3-D. It does not require NLOS identification and mitigation, hence, it can be applied in any environment. Some background details and a detailed experimental setup is provided. Comparisons with schemes that require NLOS identification and mitigation, from earlier work, are also presented. The results demonstrate that the direct localisation scheme using least-squares support vector machine (the Direct method) achieves superior outage to TDOA and TOA/AOA for NLOS environments. TDOA has better outage in LOS environments. TOA/AOA performs better for an accepted outage probability of 20 percent or greater but as the outage probability lowers, the Direct method becomes better.
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Retkute R, Townsend AJ, Murchie EH, Jensen OE, Preston SP. Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies. Ann Bot 2018; 122:291-302. [PMID: 29846520 PMCID: PMC6070062 DOI: 10.1093/aob/mcy067] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 04/17/2018] [Indexed: 05/06/2023]
Abstract
Background and Aims Diurnal changes in solar position and intensity combined with the structural complexity of plant architecture result in highly variable and dynamic light patterns within the plant canopy. This affects productivity through the complex ways that photosynthesis responds to changes in light intensity. Current methods to characterize light dynamics, such as ray-tracing, are able to produce data with excellent spatio-temporal resolution but are computationally intensive and the resulting data are complex and high-dimensional. This necessitates development of more economical models for summarizing the data and for simulating realistic light patterns over the course of a day. Methods High-resolution reconstructions of field-grown plants are assembled in various configurations to form canopies, and a forward ray-tracing algorithm is applied to the canopies to compute light dynamics at high (1 min) temporal resolution. From the ray-tracer output, the sunlit or shaded state for each patch on the plants is determined, and these data are used to develop a novel stochastic model for the sunlit-shaded patterns. The model is designed to be straightforward to fit to data using maximum likelihood estimation, and fast to simulate from. Key Results For a wide range of contrasting 3-D canopies, the stochastic model is able to summarize, and replicate in simulations, key features of the light dynamics. When light patterns simulated from the stochastic model are used as input to a model of photoinhibition, the predicted reduction in carbon gain is similar to that from calculations based on the (extremely costly) ray-tracer data. Conclusions The model provides a way to summarize highly complex data in a small number of parameters, and a cost-effective way to simulate realistic light patterns. Simulations from the model will be particularly useful for feeding into larger-scale photosynthesis models for calculating how light dynamics affects the photosynthetic productivity of canopies.
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Affiliation(s)
- Renata Retkute
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, UK
- Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research, School of Life Sciences, University of Warwick, Coventry, UK
| | - Alexandra J Townsend
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, UK
| | - Erik H Murchie
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, UK
| | - Oliver E Jensen
- School of Mathematics, University of Manchester, Oxford Road, Manchester, UK
| | - Simon P Preston
- School of Mathematical Sciences, University of Nottingham, Nottingham, UK
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Rebuffi L, Sánchez Del Río M, Busetto E, Scardi P. Understanding the instrumental profile of synchrotron radiation X-ray powder diffraction beamlines. J Synchrotron Radiat 2017; 24:622-635. [PMID: 28452754 DOI: 10.1107/s1600577517005434] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2016] [Accepted: 04/10/2017] [Indexed: 06/07/2023]
Abstract
A Monte Carlo algorithm has been developed to calculate the instrumental profile function of a powder diffraction synchrotron beamline. Realistic models of all optical elements are implemented in a ray-tracing software. The proposed approach and the emerging paradigm have been investigated and verified for several existing X-ray powder diffraction beamlines. The results, which can be extended to further facilities, show a new and general way of assessing the contribution of instrumental broadening to synchrotron radiation data, based on ab initio simulations.
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Affiliation(s)
- Luca Rebuffi
- Elettra-Sincrotrone Trieste SCpA, Trieste, Italy
| | | | | | - Paolo Scardi
- Università degli Studi di Trento, Mesiano, Trento, Italy
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Sinsheimer J, Bouet N, Ghose S, Dooryhee E, Conley R. Fabrication and testing of a newly designed slit system for depth-resolved X-ray diffraction measurements. J Synchrotron Radiat 2016; 23:1296-1304. [PMID: 27787235 DOI: 10.1107/s1600577516013084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2016] [Accepted: 08/13/2016] [Indexed: 06/06/2023]
Abstract
A new system of slits called `spiderweb slits' have been developed for depth-resolved powder or polycrystalline X-ray diffraction measurements. The slits act on diffracted X-rays to select a particular gauge volume of sample, while absorbing diffracted X-rays from outside of this volume. Although the slit geometry is to some extent similar to that of previously developed conical slits or spiral slits, this new design has advantages over the previous ones in use for complex heterogeneous materials and in situ and operando diffraction measurements. For example, the slits can measure a majority of any diffraction cone for any polycrystalline material, over a continuous range of diffraction angles, and work for X-ray energies of tens to hundreds of kiloelectronvolts. The design is generated and optimized using ray-tracing simulations, and fabricated through laser micromachining. The first prototype was successfully tested at the X17A beamline at the National Synchrotron Light Source, and shows similar performance to simulations, demonstrating gauge volume selection for standard powders, for all diffraction peaks over angles of 2-10°. A similar, but improved, design will be implemented at the X-ray Powder Diffraction beamline at the National Synchrotron Light Source II.
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Affiliation(s)
- John Sinsheimer
- National Synchroton Light Source II, Brookhaven National Laboratory, PO Box 5000, Upton, NY 11973-5000, USA
| | - Nathalie Bouet
- National Synchroton Light Source II, Brookhaven National Laboratory, PO Box 5000, Upton, NY 11973-5000, USA
| | - Sanjit Ghose
- National Synchroton Light Source II, Brookhaven National Laboratory, PO Box 5000, Upton, NY 11973-5000, USA
| | - Eric Dooryhee
- National Synchroton Light Source II, Brookhaven National Laboratory, PO Box 5000, Upton, NY 11973-5000, USA
| | - Ray Conley
- National Synchroton Light Source II, Brookhaven National Laboratory, PO Box 5000, Upton, NY 11973-5000, USA
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Shi X, Reininger R, Sanchez del Rio M, Assoufid L. A hybrid method for X-ray optics simulation: combining geometric ray-tracing and wavefront propagation. J Synchrotron Radiat 2014; 21:669-78. [PMID: 24971960 PMCID: PMC4861879 DOI: 10.1107/s160057751400650x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2014] [Accepted: 03/24/2014] [Indexed: 05/26/2023]
Abstract
A new method for beamline simulation combining ray-tracing and wavefront propagation is described. The `Hybrid Method' computes diffraction effects when the beam is clipped by an aperture or mirror length and can also simulate the effect of figure errors in the optical elements when diffraction is present. The effect of different spatial frequencies of figure errors on the image is compared with SHADOW results pointing to the limitations of the latter. The code has been benchmarked against the multi-electron version of SRW in one dimension to show its validity in the case of fully, partially and non-coherent beams. The results demonstrate that the code is considerably faster than the multi-electron version of SRW and is therefore a useful tool for beamline design and optimization.
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Affiliation(s)
- Xianbo Shi
- Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439, USA
| | - Ruben Reininger
- Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439, USA
| | | | - Lahsen Assoufid
- Advanced Photon Source, Argonne National Laboratory, Argonne, IL 60439, USA
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Unglert CI, Warger WC, Hostens J, Namati E, Birngruber R, Bouma BE, Tearney GJ. Validation of two-dimensional and three-dimensional measurements of subpleural alveolar size parameters by optical coherence tomography. J Biomed Opt 2012; 17:126015. [PMID: 23235834 PMCID: PMC3519489 DOI: 10.1117/1.jbo.17.12.126015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Optical coherence tomography (OCT) has been increasingly used for imaging pulmonary alveoli. Only a few studies, however, have quantified individual alveolar areas, and the validity of alveolar volumes represented within OCT images has not been shown. To validate quantitative measurements of alveoli from OCT images, we compared the cross-sectional area, perimeter, volume, and surface area of matched subpleural alveoli from microcomputed tomography (micro-CT) and OCT images of fixed air-filled swine samples. The relative change in size between different alveoli was extremely well correlated (r>0.9, P<0.0001), but OCT images underestimated absolute sizes compared to micro-CT by 27% (area), 7% (perimeter), 46% (volume), and 25% (surface area) on average. We hypothesized that the differences resulted from refraction at the tissue-air interfaces and developed a ray-tracing model that approximates the reconstructed alveolar size within OCT images. Using this model and OCT measurements of the refractive index for lung tissue (1.41 for fresh, 1.53 for fixed), we derived equations to obtain absolute size measurements of superellipse and circular alveoli with the use of predictive correction factors. These methods and results should enable the quantification of alveolar sizes from OCT images in vivo.
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Affiliation(s)
- Carolin I Unglert
- Harvard Medical School and Massachusetts General Hospital, Wellman Center for Photomedicine, 40 Parkman Street, RSL 160, Boston, Massachusetts 02114, USA.
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del Rio MS, Canestrari N, Jiang F, Cerrina F. SHADOW3: a new version of the synchrotron X-ray optics modelling package. J Synchrotron Radiat 2011; 18:708-16. [PMID: 21862849 PMCID: PMC3267628 DOI: 10.1107/s0909049511026306] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2011] [Accepted: 07/02/2011] [Indexed: 05/20/2023]
Abstract
A new version of the popular X-ray tracing code SHADOW is presented. An important step has been made in restructuring the code following new computer engineering standards, ending with a modular Fortran 2003 structure and an application programming interface (API). The new code has been designed to be compatible with the original file-oriented SHADOW philosophy, but simplifying the compilation, installation and use. In addition, users can now become programmers using the newly designed SHADOW3 API for creating scripts, macros and programs; being able to deal with optical system optimization, image simulation, and also low transmission calculations requiring a large number of rays (>10(6)). Plans for future development and questions on how to accomplish them are also discussed.
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