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Jestilä JS, Denton JK, Perez EH, Khuu T, Aprà E, Xantheas SS, Johnson MA, Uggerud E. Characterization of the alkali metal oxalates (MC 2O 4-) and their formation by CO 2 reduction via the alkali metal carbonites (MCO 2-). Phys Chem Chem Phys 2020; 22:7460-7473. [PMID: 32219243 DOI: 10.1039/d0cp00547a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The reduction of carbon dioxide to oxalate has been studied by experimental Collisionally Induced Dissociation (CID) and vibrational characterization of the alkali metal oxalates, supplemented by theoretical electronic structure calculations. The critical step in the reductive process is the coordination of CO2 to an alkali metal anion, forming a metal carbonite MCO2- able to subsequently receive a second CO2 molecule. While the energetic demand for these reactions is generally low, we find that the degree of activation of CO2 in terms of charge transfer and transition state energies is the highest for lithium and systematically decreases down the group (M = Li-Cs). This is correlated to the strength of the binding interaction between the alkali metal and CO2, which can be related to the structure of the oxalate moiety within the product metal complexes evolving from a planar to a staggered conformer with increasing atomic number of the interacting metal. Similar structural changes are observed for crystalline alkali metal oxalates, although the C2O42- moiety is in general more planar in these, a fact that is attributed to the increased number of interacting alkali metal cations compared to the gas-phase ions.
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Affiliation(s)
- Joakim S Jestilä
- Department of Chemistry and Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, P.O. Box 1033, Blindern, Oslo N-0135, Norway.
| | - Joanna K Denton
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, USA
| | - Evan H Perez
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, USA
| | - Thien Khuu
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, USA
| | - Edoardo Aprà
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, P.O. Box 999, Richland, Washington 99352, USA
| | - Sotiris S Xantheas
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington, USA and Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, USA
| | - Einar Uggerud
- Department of Chemistry and Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, P.O. Box 1033, Blindern, Oslo N-0135, Norway.
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52
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Talbot JJ, Yang N, Huang M, Duong CH, McCoy AB, Steele RP, Johnson MA. Spectroscopic Signatures of Mode-Dependent Tunnel Splitting in the Iodide-Water Binary Complex. J Phys Chem A 2020; 124:2991-3001. [PMID: 32162519 DOI: 10.1021/acs.jpca.0c00853] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The gas-phase vibrational spectrum of the isolated iodide-water cluster ion (I-·H2O), first reported in 1996, presents one of the most difficult, long-standing spectroscopic puzzles involving ion microhydration. Although the spectra of the smaller halides are well described in the context of an asymmetrical ground-state structure in which only one OH group is hydrogen-bonded to the ion, the I-·H2O spectrum displays multiplet structures with partially resolved rotational patterns that are additionally influenced by quantum nuclear spin statistics. In this study, this complex behavior is unraveled with a combination of experimental methods, including ion preparation in a temperature-controlled ion trap and spectral simplification through applications of tag-free, two-color IR-IR double-resonance spectroscopy. Analysis of the double-resonance spectra reveals a vibrational ground-state tunneling splitting of about 20 cm-1, which is on the same order as the spacing between the peaks that comprise the multiplet structure. These findings are further supported by the results obtained from a fully coupled, six-dimensional calculation of the vibrational spectrum. The underlying level structure can then be understood as a consequence of experimentally measurable, vibrational mode-dependent tunneling splittings (which, in the case of the ground vibrational state, is comparable to the rotational energy spacing between levels with Ka = 0 and 1), as well as Fermi resonance interactions. The latter include the hydrogen-bonded OH stretches and combination bands that involve the HOH bend overtones and soft-mode excitations of frustrated translation and rotation displacements of the water molecule relative to the ion. These anharmonic couplings yield closely spaced bands that are activated in the IR by borrowing intensity from the OH stretch fundamentals.
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Affiliation(s)
- Justin J Talbot
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Nan Yang
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Meng Huang
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Chinh H Duong
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Anne B McCoy
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Ryan P Steele
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry, University of Utah, Salt Lake City, Utah 84112, United States
| | - Mark A Johnson
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
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53
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Mitra S, Duong CH, McCaslin LM, Gerber RB, Johnson MA. Isomer-specific cryogenic ion vibrational spectroscopy of the D 2 tagged Cs +(HNO 3)(H 2O) n=0-2 complexes: ion-driven enhancement of the acidic H-bond to water. Phys Chem Chem Phys 2020; 22:4501-4507. [PMID: 32068217 DOI: 10.1039/c9cp06689f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report how the binary HNO3(H2O) interaction is modified upon complexation with a nearby Cs+ ion. Isomer-selective IR photodissociation spectra of the D2-tagged, ternary Cs+(HNO3)H2O cation confirms that two structural isomers are generated in the cryogenic ion source. In one of these, both HNO3 and H2O are directly coordinated to the ion, while in the other, the water molecule is attached to the OH group of the acid, which in turn binds to Cs+ with its -NO2 group. The acidic OH stretching fundamental in the latter isomer displays a ∼300 cm-1 red-shift relative to that in the neutral H-bonded van der Waals complex, HNO3(H2O). This behavior is analyzed with the aid of electronic structure calculations and discussed in the context of the increased effective acidity of HNO3 in the presence of the cation.
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Affiliation(s)
- Sayoni Mitra
- Sterling Chemistry Laboratory, Yale University, New Haven, CT, USA.
| | - Chinh H Duong
- Sterling Chemistry Laboratory, Yale University, New Haven, CT, USA.
| | - Laura M McCaslin
- Department of Chemistry, University of California Irvine, Irvine, CA, USA. and Institute of Chemistry and the Fritz-Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem, Israel
| | - R Benny Gerber
- Department of Chemistry, University of California Irvine, Irvine, CA, USA. and Institute of Chemistry and the Fritz-Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem, Israel
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, CT, USA.
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54
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Zeng HJ, Menges FS, Niemann T, Strate A, Ludwig R, Johnson MA. Chain Length Dependence of Hydrogen Bond Linkages between Cationic Constituents in Hydroxy-Functionalized Ionic Liquids: Tracking Bulk Behavior to the Molecular Level with Cold Cluster Ion Spectroscopy. J Phys Chem Lett 2020; 11:683-688. [PMID: 31899639 DOI: 10.1021/acs.jpclett.9b03359] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Hydroxy functionalization of cations in ionic liquids (ILs) can lead to formation of contacts between their OH groups [so-called (c-c) interactions]. One class of these linkages involves cooperatively enhanced hydrogen bonds to anionic partners that are sufficiently strong to overcome the repulsion between two positively charged centers. Herein, we clarify how the propensity for the formation of (c-c) contacts depends on the alkyl chain length between two cationic rings and their OH groups by analyzing the temperature-dependent IR spectra of bulk ILs as well as the vibrational predissociation spectra of ∼35 K complexes comprised of two cations and one anion. This study compares the behavior of two cationic derivatives with ethyl and propyl chains complexed with two different anions: bis(trifluoromethylsulfonyl)imide and tetrafluoroborate. Only the bulk ILs with the longer chain propyl derivative [HPMPip+ = 1-(3-hydroxypropyl)-1-methylpiperidinium] display (c-c) interactions. Molecular-level aspects of this docking arrangement are revealed by analyzing the OH stretching fundamentals displayed by the ternary complexes.
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Affiliation(s)
- Helen J Zeng
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Fabian S Menges
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Thomas Niemann
- Department of Chemistry , University of Rostock , 18059 Rostock , Germany
- Department Life, Light & Matter , University of Rostock , Albert-Einstein-Strasse 25 , 18059 Rostock , Germany
| | - Anne Strate
- Department of Chemistry , University of Rostock , 18059 Rostock , Germany
- Department Life, Light & Matter , University of Rostock , Albert-Einstein-Strasse 25 , 18059 Rostock , Germany
| | - Ralf Ludwig
- Department of Chemistry , University of Rostock , 18059 Rostock , Germany
- Department Life, Light & Matter , University of Rostock , Albert-Einstein-Strasse 25 , 18059 Rostock , Germany
- Leibniz-Institut für Katalyse e.V. , Albert-Einstein-Strasse 29a , 18059 Rostock , Germany
| | - Mark A Johnson
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
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Lathouwers E, Wong EY, Brown K, Baugh B, Ghys A, Jezorwski J, Mohsine EG, Van Landuyt E, Opsomer M, De Meyer S, De Wit S, Florence E, Vandekerckhove L, Vandercam B, Brunetta J, Klein M, Murphy D, Rachlis A, Walmsley S, Ajana F, Cotte L, Girard PM, Katlama C, Molina JM, Poizot-Martin I, Raffi F, Rey D, Reynes J, Teicher E, Yazdanpanah Y, Arastéh K, Bickel M, Bogner J, Esser S, Faetkenheuer G, Jessen H, Kern W, Rockstroh J, Spinner C, Stellbrink HJ, Stoehr A, Antinori A, Castelli F, Chirianni A, De Luca A, Di Biagio A, Galli M, Lazzarin A, Maggiolo F, Maserati R, Mussini C, Garlicki A, Gasiorowski J, Halota W, Horban A, Parczewski M, Piekarska A, Belonosova E, Chernova O, Dushkina N, Kulagin V, Ryamova E, Shuldyakov A, Sizova N, Tsybakova O, Voronin E, Yakovlev A, Antela A, Arribas JR, Berenguer J, Casado J, Estrada V, Galindo MJ, Garcia Del Toro M, Gatell JM, Gorgolas M, Gutierrez F, Gutierrez MDM, Negredo E, Pineda JA, Podzamczer D, Portilla Sogorb J, Rivero A, Rubio R, Viciana P, De Los Santos I, Clarke A, Gazzard BG, Johnson MA, Orkin C, Reeves I, Waters L, Benson P, Bhatti L, Bredeek F, Crofoot G, Cunningham D, DeJesus E, Eron J, Felizarta F, Franco R, Gallant J, Hagins D, Henry K, Jayaweera D, Lucasti C, Martorell C, McDonald C, McGowan J, Mills A, Morales-Ramirez J, Prelutsky D, Ramgopal M, Rashbaum B, Ruane P, Slim J, Wilkin A, deVente J, De Wit S, Florence E, Moutschen M, Van Wijngaerden E, Vandekerckhove L, Vandercam B, Brunetta J, Conway B, Klein M, Murphy D, Rachlis A, Shafran S, Walmsley S, Ajana F, Cotte L, Girard PM, Katlama C, Molina JM, Poizot-Martin I, Raffi F, Rey D, Reynes J, Teicher E, Yazdanpanah Y, Gasiorowski J, Halota W, Horban A, Piekarska A, Witor A, Arribas JR, Perez-Valero I, Berenguer J, Casado J, Gatell JM, Gutierrez F, Galindo MJ, Gutierrez MDM, Iribarren JA, Knobel H, Negredo E, Pineda JA, Podzamczer D, Portilla Sogorb J, Pulido F, Ricart C, Rivero A, Santos Gil I, Blaxhult A, Flamholc L, Gisslèn M, Thalme A, Fehr J, Rauch A, Stoeckle M, Clarke A, Gazzard BG, Johnson MA, Orkin C, Post F, Ustianowski A, Waters L, Bailey J, Benson P, Bhatti L, Brar I, Bredeek UF, Brinson C, Crofoot G, Cunningham D, DeJesus E, Dietz C, Dretler R, Eron J, Felizarta F, Fichtenbaum C, Gallant J, Gathe J, Hagins D, Henn S, Henry KW, Huhn G, Jain M, Lucasti C, Martorell C, McDonald C, Mills A, Morales-Ramirez J, Mounzer K, Nahass R, Olivet H, Osiyemi O, Prelutsky D, Ramgopal M, Rashbaum B, Richmond G, Ruane P, Scarsella A, Scribner A, Shalit P, Shamblaw D, Slim J, Tashima K, Voskuhl G, Ward D, Wilkin A, de Vente J. Week 48 Resistance Analyses of the Once-Daily, Single-Tablet Regimen Darunavir/Cobicistat/Emtricitabine/Tenofovir Alafenamide (D/C/F/TAF) in Adults Living with HIV-1 from the Phase III Randomized AMBER and EMERALD Trials. AIDS Res Hum Retroviruses 2020; 36:48-57. [PMID: 31516033 PMCID: PMC6944133 DOI: 10.1089/aid.2019.0111] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Darunavir/cobicistat/emtricitabine/tenofovir alafenamide (D/C/F/TAF) 800/150/200/10 mg is being investigated in two Phase III trials, AMBER (NCT02431247; treatment-naive adults) and EMERALD (NCT02269917; treatment-experienced, virologically suppressed adults). Week 48 AMBER and EMERALD resistance analyses are presented. Postbaseline samples for genotyping/phenotyping were analyzed from protocol-defined virologic failures (PDVFs) with viral load (VL) ≥400 copies/mL at failure/later time points. Post hoc analyses were deep sequencing in AMBER, and HIV-1 proviral DNA from baseline samples (VL <50 copies/mL) in EMERALD. Through week 48 across both studies, no darunavir, primary PI, or tenofovir resistance-associated mutations (RAMs) were observed in HIV-1 viruses of 1,125 participants receiving D/C/F/TAF or 629 receiving boosted darunavir plus emtricitabine/tenofovir-disoproxil-fumarate. In AMBER, the nucleos(t)ide analog reverse transcriptase inhibitor (N(t)RTI) RAM M184I/V was identified in HIV-1 of one participant during D/C/F/TAF treatment. M184V was detected pretreatment as a minority variant (9%). In EMERALD, in participants with prior VF and genoarchive data (N = 140; 98 D/C/F/TAF and 42 control), 4% had viruses with darunavir RAMs, 38% with emtricitabine RAMs, mainly at position 184 (41% not fully susceptible to emtricitabine), 4% with tenofovir RAMs, and 21% ≥ 3 thymidine analog-associated mutations (24% not fully susceptible to tenofovir) detected at screening. All achieved VL <50 copies/mL at week 48 or prior discontinuation. D/C/F/TAF has a high genetic barrier to resistance; no darunavir, primary PI, or tenofovir RAMs were observed through 48 weeks in AMBER and EMERALD. Only one postbaseline M184I/V RAM was observed in HIV-1 of an AMBER participant. In EMERALD, baseline archived RAMs to darunavir, emtricitabine, and tenofovir in participants with prior VF did not preclude virologic response.
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Affiliation(s)
| | - Eric Y Wong
- Janssen Scientific Affairs, LLC, Titusville, New Jersey
| | | | - Bryan Baugh
- Janssen Research & Development LLC, Raritan, New Jersey
| | - Anne Ghys
- Janssen Pharmaceutica NV, Beerse, Belgium
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56
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Mitra S, Duong CH, McCaslin LM, Gerber RB, Johnson MA. Correction: Isomer-specific cryogenic ion vibrational spectroscopy of the D 2 tagged Cs +(HNO 3)(H 2O) n=0–2 complexes: ion-driven enhancement of the acidic H-bond to water. Phys Chem Chem Phys 2020; 22:6478. [DOI: 10.1039/d0cp90054k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Correction for ‘Isomer-specific cryogenic ion vibrational spectroscopy of the D2 tagged Cs+(HNO3)(H2O)n=0–2 complexes: ion-driven enhancement of the acidic H-bond to water’ by Sayoni Mitra et al., Phys. Chem. Chem. Phys., 2020, DOI: 10.1039/c9cp06689f.
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Affiliation(s)
- Sayoni Mitra
- Sterling Chemistry Laboratory
- Yale University
- New Haven
- USA
| | - Chinh H. Duong
- Sterling Chemistry Laboratory
- Yale University
- New Haven
- USA
| | - Laura M. McCaslin
- Department of Chemistry
- University of California Irvine
- Irvine
- USA
- Institute of Chemistry and the Fritz-Haber Center for Molecular Dynamics
| | - R. Benny Gerber
- Department of Chemistry
- University of California Irvine
- Irvine
- USA
- Institute of Chemistry and the Fritz-Haber Center for Molecular Dynamics
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Zeng HJ, Menges FS, Johnson MA. Comment on “C–D Vibration at C2 Position of Imidazolium Cation as a Probe of the Ionic Liquid Microenvironment”. J Phys Chem A 2019; 124:755-756. [DOI: 10.1021/acs.jpca.9b10728] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Helen J. Zeng
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Fabian S. Menges
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
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58
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Duong CH, Yang N, Johnson MA, DiRisio RJ, McCoy AB, Yu Q, Bowman JM. Disentangling the Complex Vibrational Mechanics of the Protonated Water Trimer by Rational Control of Its Hydrogen Bonds. J Phys Chem A 2019; 123:7965-7972. [PMID: 31430153 DOI: 10.1021/acs.jpca.9b05576] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The vibrational spectrum of the protonated water trimer, H+(H2O)3, is surprisingly complex, with many strong features in the expected region of the fundamentals associated with two H-bonded OH groups on the H3O+ core ion. Here we follow how the bands in this region of the spectrum evolve when the energies of the fundamentals in the H-bonded OH stretches are systematically increased by the attachment of increasingly strongly bound "tag" molecules (He, Ar, D2, N2, CO, and H2O) to the free OH position on the hydronium core ion of H+(H2O)3, as well as by replacement of the hydrogen atom in the nonbonded OH group on hydronium with methyl and ethyl groups. This allows for the incremental transformation of the complex band pattern observed in H+(H2O)3 into that of the "Eigen" structure of the protonated water tetramer. Differences among the trajectories of the various bands provide an empirical way to disentangle features primarily due to the displacements of the OH stretches bound to the hydronium core from those arising from anharmonic coupling to states involving one or more quanta in lower frequency modes. The latter are found to be dramatically enhanced when the nominal frequencies of the intermolecular OH stretching modes approach those of the intramolecular bends of the H3O+ and H2O constituents in both H and D isotopologues.
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Affiliation(s)
- Chinh H Duong
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Nan Yang
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Ryan J DiRisio
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
| | - Anne B McCoy
- Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States
| | - Qi Yu
- Department of Chemistry and Cherry L. Emerson Center for Computational Science , Emory University , Atlanta , Georgia 30322 , United States
| | - Joel M Bowman
- Department of Chemistry and Cherry L. Emerson Center for Computational Science , Emory University , Atlanta , Georgia 30322 , United States
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59
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Menges FS, Perez EH, Edington SC, Duong CH, Yang N, Johnson MA. Integration of High-Resolution Mass Spectrometry with Cryogenic Ion Vibrational Spectroscopy. J Am Soc Mass Spectrom 2019; 30:1551-1557. [PMID: 31183838 PMCID: PMC6813835 DOI: 10.1007/s13361-019-02238-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Revised: 04/23/2019] [Accepted: 04/24/2019] [Indexed: 05/07/2023]
Abstract
We describe an instrumental configuration for the structural characterization of fragment ions generated by collisional dissociation of peptide ions in the typical MS2 scheme widely used for peptide sequencing. Structures are determined by comparing the vibrational band patterns displayed by cryogenically cooled ions with calculated spectra for candidate structural isomers. These spectra were obtained in a linear action mode by photodissociation of weakly bound D2 molecules. This is accomplished by interfacing a Thermo Fisher Scientific Orbitrap Velos Pro to a cryogenic, triple focusing time-of-flight photofragmentation mass spectrometer (the Yale TOF spectrometer). The interface involves replacement of the Orbitrap's higher-energy collisional dissociation cell with a voltage-gated aperture that maintains the commercial instrument's standard capabilities while enabling bidirectional transfer of ions between the high-resolution FT analyzer and external ion sources. The performance of this hybrid instrument is demonstrated by its application to the a1, y1 and z1 fragment ions generated by CID of a prototypical dipeptide precursor, protonated L-phenylalanyl-L-tyrosine (H+-Phe-Tyr-OH or FY-H+). The structure of the unusual z1 ion, nominally formed after NH3 is ejected from the protonated tyrosine (y1) product, is identified as the cyclopropane-based product is tentatively identified as a cyclopropane-based product.
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Affiliation(s)
- Fabian S Menges
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Evan H Perez
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Sean C Edington
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Chinh H Duong
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Nan Yang
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Mark A Johnson
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA.
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60
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Zeng HJ, Johnson MA, Ramdihal JD, Sumner RA, Rodriguez C, Lall-Ramnarine SI, Wishart JF. Spectroscopic Assessment of Intra- and Intermolecular Hydrogen Bonding in Ether-Functionalized Imidazolium Ionic Liquids. J Phys Chem A 2019; 123:8370-8376. [DOI: 10.1021/acs.jpca.9b04345] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Helen J. Zeng
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Jasodra D. Ramdihal
- Chemistry Department, Queensborough Community College of the City University of New York, Bayside, New York 11364, United States
| | - Rawlric A. Sumner
- Chemistry Department, Queensborough Community College of the City University of New York, Bayside, New York 11364, United States
| | - Chanele Rodriguez
- Chemistry Department, Queensborough Community College of the City University of New York, Bayside, New York 11364, United States
| | - Sharon I. Lall-Ramnarine
- Chemistry Department, Queensborough Community College of the City University of New York, Bayside, New York 11364, United States
| | - James F. Wishart
- Chemistry Division, Brookhaven National Laboratory, Upton, New York 11973, United States
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61
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Denton JK, Kelleher PJ, Johnson MA, Baer MD, Kathmann SM, Mundy CJ, Wellen Rudd BA, Allen HC, Choi TH, Jordan KD. Molecular-level origin of the carboxylate head group response to divalent metal ion complexation at the air-water interface. Proc Natl Acad Sci U S A 2019; 116:14874-14880. [PMID: 31278149 PMCID: PMC6660762 DOI: 10.1073/pnas.1818600116] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We exploit gas-phase cluster ion techniques to provide insight into the local interactions underlying divalent metal ion-driven changes in the spectra of carboxylic acids at the air-water interface. This information clarifies the experimental findings that the CO stretching bands of long-chain acids appear at very similar energies when the head group is deprotonated by high subphase pH or exposed to relatively high concentrations of Ca2+ metal ions. To this end, we report the evolution of the vibrational spectra of size-selected [Ca2+·RCO2-]+·(H2O) n=0to12 and RCO2-·(H2O) n=0to14 cluster ions toward the features observed at the air-water interface. Surprisingly, not only does stepwise hydration of the RCO2- anion and the [Ca2+·RCO2-]+ contact ion pair yield solvatochromic responses in opposite directions, but in both cases, the responses of the 2 (symmetric and asymmetric stretching) CO bands to hydration are opposite to each other. The result is that both CO bands evolve toward their interfacial asymptotes from opposite directions. Simulations of the [Ca2+·RCO2-]+·(H2O) n clusters indicate that the metal ion remains directly bound to the head group in a contact ion pair motif as the asymmetric CO stretch converges at the interfacial value by n = 12. This establishes that direct metal complexation or deprotonation can account for the interfacial behavior. We discuss these effects in the context of a model that invokes the water network-dependent local electric field along the C-C bond that connects the head group to the hydrocarbon tail as the key microscopic parameter that is correlated with the observed trends.
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Affiliation(s)
- Joanna K Denton
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520
| | | | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520;
| | - Marcel D Baer
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352
| | - Shawn M Kathmann
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352
| | - Christopher J Mundy
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352
- Department of Chemical Engineering, University of Washington, Seattle, WA 98195
| | - Bethany A Wellen Rudd
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, OH 43210
- Department of Chemistry, Ohio Wesleyan University, Delaware, OH 43015
| | - Heather C Allen
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, OH 43210
| | - Tae Hoon Choi
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260
| | - Kenneth D Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260
- Department of Chemical and Petroleum Engineering, University of Pittsburgh, Pittsburgh, PA 15260
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McCaslin LM, Johnson MA, Gerber RB. Mechanisms and competition of halide substitution and hydrolysis in reactions of N 2O 5 with seawater. Sci Adv 2019; 5:eaav6503. [PMID: 31183400 PMCID: PMC6551187 DOI: 10.1126/sciadv.aav6503] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2018] [Accepted: 05/02/2019] [Indexed: 06/09/2023]
Abstract
SN2-type halide substitution and hydrolysis are two of the most ubiquitous reactions in chemistry. The interplay between these processes is fundamental in atmospheric chemistry through reactions of N2O5 and seawater. N2O5 plays a major role in regulating levels of O3, OH, NO x , and CH4. While the reactions of N2O5 and seawater are of central importance, little is known about their mechanisms. Of interest is the activation of Cl in seawater by the formation of gaseous ClNO2, which occurs despite the fact that hydrolysis (to HNO3) is energetically more favorable. We determine key features of the reaction landscape that account for this behavior in a theoretical study of the cluster N2O5/Cl-/H2O. This was carried out using ab initio molecular dynamics to determine reaction pathways, structures, and time scales. While hydrolysis of N2O5 occurs in the absence of Cl-, results here reveal that a low-lying pathway featuring halide substitution intermediates enhances hydrolysis.
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Affiliation(s)
- Laura M. McCaslin
- Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem 9190401, Israel
| | - Mark A. Johnson
- Department of Chemistry, Yale University, New Haven, CT 06525, USA
| | - R. Benny Gerber
- Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics, The Hebrew University, Jerusalem 9190401, Israel
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697, USA
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63
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Kawashima T, Johnson MA. Gifu 2018: meeting of the International Association of Sexual Plant Reproduction Research. Plant Reprod 2019; 32:137-139. [PMID: 30499011 DOI: 10.1007/s00497-018-00352-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Accepted: 11/23/2018] [Indexed: 06/09/2023]
Affiliation(s)
- Tomokazu Kawashima
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546, USA.
| | - Mark A Johnson
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
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64
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Abstract
This introduction provides a historical context for the development of ion spectroscopy over the past half century by following the evolution of experimental methods to the present state-of-the-art. Rather than attempt a comprehensive review, we focus on how early work on small ions, carried out with fluorescence, direct absorption, and photoelectron spectroscopy, evolved into powerful technologies that can now address complex chemical problems ranging from catalysis to biophysics. One of these developments is the incorporation of cooling and temperature control to enable the general application of "messenger tagging" vibrational spectroscopy, first carried out using ionized supersonic jets and then with buffer gas cooling in radiofrequency ion traps. Some key advances in the application of time-resolved pump-probe techniques to follow ultrafast dynamics are also discussed, as are significant benchmarks in the refinement of ion mobility to allow spectroscopic investigation of large biopolymers with well-defined shapes. We close with a few remarks on challenges and opportunities to explore molecular level mechanics that drive macroscopic behavior.
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Affiliation(s)
- Helen J Zeng
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA.
| | - Nan Yang
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA.
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA.
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65
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Abstract
In flowering plants, pollen tubes undergo tip growth to deliver two nonmotile sperm to the ovule where they fuse with an egg and central cell to achieve double fertilization. This extended journey involves rapid growth and changes in gene activity that manage compatible interactions with at least seven different cell types. Nearly half of the genome is expressed in haploid pollen, which facilitates genetic analysis, even of essential genes. These unique attributes make pollen an ideal system with which to study plant cell-cell interactions, tip growth, cell migration, the modulation of cell wall integrity, and gene expression networks. We highlight the signaling systems required for pollen tube navigation and the potential roles of Ca2+ signals. The dynamics of pollen development make sexual reproduction highly sensitive to heat stress. Understanding this vulnerability may generate strategies to improve seed crop yields that are under threat from climate change.
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Affiliation(s)
- Mark A Johnson
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912, USA;
| | - Jeffrey F Harper
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557, USA;
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66
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Abstract
In flowering plants, pollen tubes undergo tip growth to deliver two nonmotile sperm to the ovule where they fuse with an egg and central cell to achieve double fertilization. This extended journey involves rapid growth and changes in gene activity that manage compatible interactions with at least seven different cell types. Nearly half of the genome is expressed in haploid pollen, which facilitates genetic analysis, even of essential genes. These unique attributes make pollen an ideal system with which to study plant cell-cell interactions, tip growth, cell migration, the modulation of cell wall integrity, and gene expression networks. We highlight the signaling systems required for pollen tube navigation and the potential roles of Ca2+ signals. The dynamics of pollen development make sexual reproduction highly sensitive to heat stress. Understanding this vulnerability may generate strategies to improve seed crop yields that are under threat from climate change.
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Affiliation(s)
- Mark A Johnson
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912, USA;
| | - Jeffrey F Harper
- Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Nevada 89557, USA;
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67
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Yang N, Duong CH, Kelleher PJ, McCoy AB, Johnson MA. Deconstructing water's diffuse OH stretching vibrational spectrum with cold clusters. Science 2019; 364:275-278. [PMID: 31000660 DOI: 10.1126/science.aaw4086] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Accepted: 03/11/2019] [Indexed: 05/05/2023]
Abstract
The diffuse vibrational envelope displayed by water precludes direct observation of how different hydrogen-bond topologies dictate the spectral response of individual hydroxy group (OH) oscillators. Using cold, isotopically labeled cluster ions, we report the spectral signatures of a single, intact water (H2O) molecule embedded at various sites in the clathrate-like cage structure adopted by the Cs+·(D2O)20 ion. These patterns reveal the site-dependent correlation between the frequencies of the two OH groups on the same water molecule and establish that the bound OH companion of the free OH group exclusively accounts for bands in the lower-energy region of the spectrum. The observed multiplet structures reveal the homogeneous linewidths of the fundamentals and quantify the anharmonic contributions arising from coupling to both the intramolecular bending and intermolecular soft modes.
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Affiliation(s)
- Nan Yang
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA
| | - Chinh H Duong
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA
| | - Patrick J Kelleher
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA
| | - Anne B McCoy
- Department of Chemistry, University of Washington, Seattle, WA 98195, USA.
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, CT 06520, USA.
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Ponvert N, Goldberg J, Leydon A, Johnson MA. Iterative subtraction facilitates automated, quantitative analysis of multiple pollen tube growth features. Plant Reprod 2019; 32:45-54. [PMID: 30543045 DOI: 10.1007/s00497-018-00351-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Accepted: 11/22/2018] [Indexed: 06/09/2023]
Abstract
In flowering plants, successful reproduction and generation of seed depends on the delivery of immotile sperm to female gametes via the pollen tube. As reproduction in flowering plants is the cornerstone of our agricultural industry, there is a need to uncover the genes, small molecules, and environmental conditions that affect pollen tube growth dynamics. However, methods for measuring pollen tube phenotypes are labor intensive, and suffer from a tradeoff between workload and resolution. To approach these problems, we use an image analysis technique called Automated Stack Iterative Subtraction (ASIST). Our tool converts growing pollen tube tips into closed particles, making the automated simultaneous extraction of multiple pollen tube phenotypes from hundreds of individual cells tractable via existing particle identification technology. Here we use our tool to analyze growth dynamics of pollen tubes in vitro, and semi in vivo. We show that ASIST provides a framework for robust, high throughput analysis of pollen tube growth behaviors in populations of cells, thus facilitating pollen tube phenomics.
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Affiliation(s)
- Nathaniel Ponvert
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA
| | - Jacob Goldberg
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA
| | - Alexander Leydon
- Department of Biology, University of Washington, Seattle, WA, 98195, USA
| | - Mark A Johnson
- Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, RI, 02912, USA.
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69
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Abstract
A series of polyampholytes based on different molar ratios on N, N-dimethylaminopropyl methacrylamide (DMAPMA), acrylic acid (AA), and optionally, N- tert-butylacrylamide ( t-BuAAm), were prepared by free radical copolymerization, and tested as DMSO-free cryoprotective agents for 3T3 fibroblast cells by using a standard freeze-rethaw protocol. Polybetaines prepared by reaction of DMAPMA homo and copolymers with 1,3-propane sultone were used as additional controls. Results showed strong effects of copolymer composition, molecular weight, polymer and NaCl concentrations, on post-thaw cell viability. Binary (DMAPMA/AA) copolymers showed best post-thaw cell viability of 70% at a 30/70 mol % ratio of DMAPMA/AA, which increased to 90% upon introduction of 9 mol % t-BuAAm while maintaining the 30/70 mol % cation/anion ratio. The use of acrylamide linkages in DMAPMA ensures absence of hydrolytic loss of cationic side chains. These polyampholytes were found to decrease ice crystal size and to form a polymer-rich, ice-free layer around cells, reducing damage from intercellular ice crystals during both freezing and thawing steps. These polyampholytes also dehydrate cells during freezing, which helps protect cells from intracellular ice damage. While cell viability immediately after thawing was high, subsequent culturing revealed poor attachment and long-term viability, which is attributed to residual cell damage from intracellular ice formation. Addition of 2 wt % DMSO or 1% BSA to the polymer-based freeze medium was found to mitigate this damage and result in post-thaw viabilities matching those achieved with 10 wt % DMSO.
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Affiliation(s)
- J Zhao
- Department of Chemistry and Chemical Biology , McMaster University , Hamilton , Ontario L8S 4M1 , Canada
| | - M A Johnson
- Department of Chemistry and Chemical Biology , McMaster University , Hamilton , Ontario L8S 4M1 , Canada
| | - R Fisher
- Department of Chemistry and Chemical Biology , McMaster University , Hamilton , Ontario L8S 4M1 , Canada
| | - N A D Burke
- Department of Chemistry and Chemical Biology , McMaster University , Hamilton , Ontario L8S 4M1 , Canada
| | - H D H Stöver
- Department of Chemistry and Chemical Biology , McMaster University , Hamilton , Ontario L8S 4M1 , Canada
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70
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Niemann T, Strate A, Ludwig R, Zeng HJ, Menges FS, Johnson MA. Cooperatively enhanced hydrogen bonds in ionic liquids: closing the loop with molecular mimics of hydroxy-functionalized cations. Phys Chem Chem Phys 2019; 21:18092-18098. [DOI: 10.1039/c9cp03300a] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The combined experimental and theoretical approach for the gas and the liquid phases provides a quantitative understanding of the competition between differently H-bonded and charged constituents in liquids.
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Affiliation(s)
- Thomas Niemann
- Department of Chemistry
- University of Rostock
- 18059 Rostock
- Germany
- Department Life
| | - Anne Strate
- Department of Chemistry
- University of Rostock
- 18059 Rostock
- Germany
- Department Life
| | - Ralf Ludwig
- Department of Chemistry
- University of Rostock
- 18059 Rostock
- Germany
- Department Life
| | - Helen J. Zeng
- Sterling Chemistry Laboratory
- Yale University
- New Haven
- USA
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71
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Niemann T, Strate A, Ludwig R, Zeng HJ, Menges FS, Johnson MA. Spektroskopischer Nachweis einer attraktiven Kation‐Kation‐ Wechselwirkung in OH‐funktionalisierten ionischen Flüssigkeiten: ein H‐Brücken‐gebundenes kettenförmiges Trimer. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201808381] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Thomas Niemann
- Institut für Chemie Universität Rostock 18059 Rostock Deutschland
- Institut für Leben, Licht & Materie Universität Rostock 18051 Rostock Deutschland
| | - Anne Strate
- Institut für Chemie Universität Rostock 18059 Rostock Deutschland
- Institut für Leben, Licht & Materie Universität Rostock 18051 Rostock Deutschland
| | - Ralf Ludwig
- Institut für Chemie Universität Rostock 18059 Rostock Deutschland
- Institut für Leben, Licht & Materie Universität Rostock 18051 Rostock Deutschland
- Leibniz-Institut für Katalyse e.V. Albert-Einstein-Straße 29a 18059 Rostock Deutschland
| | - Helen J. Zeng
- Sterling Chemistry Laboratory Universität Yale New Haven CT 06520 USA
| | - Fabian S. Menges
- Sterling Chemistry Laboratory Universität Yale New Haven CT 06520 USA
| | - Mark A. Johnson
- Sterling Chemistry Laboratory Universität Yale New Haven CT 06520 USA
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72
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Niemann T, Strate A, Ludwig R, Zeng HJ, Menges FS, Johnson MA. Spectroscopic Evidence for an Attractive Cation-Cation Interaction in Hydroxy-Functionalized Ionic Liquids: A Hydrogen-Bonded Chain-like Trimer. Angew Chem Int Ed Engl 2018; 57:15364-15368. [PMID: 30303295 DOI: 10.1002/anie.201808381] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Indexed: 12/29/2022]
Abstract
We address the formation of hydrogen bonded domains among the cationic constituents of the ionic liquid (IL) 1-(3-hydroxypropyl)pyridinium tetrafluoroborate [HPPy][BF4 ] by means of cryogenic ion vibrational predissociation spectroscopy of cold (ca. 35 K) gas-phase cluster ions and quantum chemistry. Specifically, analysis of the OH stretching bands reveals a chain-like OH⋅⋅⋅OH⋅⋅⋅OH⋅⋅⋅BF4 - binding motif involving the three cations in the cationic quinary cluster ion (HPPy+ )3 (BF4 - )2 . Calculations show that this cooperative H-bond attraction compensates for the repulsive Coulomb forces and results in stable complexes that successfully compete with those in which the OH groups are predominantly attached to the counter anions. Our combined experimental and theoretical approach provides insight into the cooperative effects that lead to the formation of hydrogen bonded domains involving the cationic constituents of ILs.
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Affiliation(s)
- Thomas Niemann
- Department of Chemistry, University of Rostock, 18059, Rostock, Germany.,Department Life, Light & Matter, University of Rostock, 18051, Rostock, Germany
| | - Anne Strate
- Department of Chemistry, University of Rostock, 18059, Rostock, Germany.,Department Life, Light & Matter, University of Rostock, 18051, Rostock, Germany
| | - Ralf Ludwig
- Department of Chemistry, University of Rostock, 18059, Rostock, Germany.,Department Life, Light & Matter, University of Rostock, 18051, Rostock, Germany.,Leibniz-Institut für Katalyse e.V., Albert-Einstein-Str. 29a, 18059, Rostock, Germany
| | - Helen J Zeng
- Sterling Chemistry Laboratory, Yale University, New Haven, CT, 06520, USA
| | - Fabian S Menges
- Sterling Chemistry Laboratory, Yale University, New Haven, CT, 06520, USA
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, CT, 06520, USA
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73
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Duong CH, Yang N, Kelleher PJ, Johnson MA, DiRisio RJ, McCoy AB, Yu Q, Bowman JM, Henderson BV, Jordan KD. Tag-Free and Isotopomer-Selective Vibrational Spectroscopy of the Cryogenically Cooled H9O4+ Cation with Two-Color, IR–IR Double-Resonance Photoexcitation: Isolating the Spectral Signature of a Single OH Group in the Hydronium Ion Core. J Phys Chem A 2018; 122:9275-9284. [DOI: 10.1021/acs.jpca.8b08507] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Chinh H. Duong
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Nan Yang
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Patrick J. Kelleher
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Ryan J. DiRisio
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Anne B. McCoy
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Qi Yu
- Department of Chemistry and Cherry L. Emerson Center for Computational Science, Emory University, Atlanta, Georgia 30322, United States
| | - Joel M. Bowman
- Department of Chemistry and Cherry L. Emerson Center for Computational Science, Emory University, Atlanta, Georgia 30322, United States
| | - Bryan V. Henderson
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Kenneth D. Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
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Spieler S, Duong CH, Kaiser A, Duensing F, Geistlinger K, Fischer M, Yang N, Kumar SS, Johnson MA, Wester R. Vibrational Predissociation Spectroscopy of Cold Protonated Tryptophan with Different Messenger Tags. J Phys Chem A 2018; 122:8037-8046. [PMID: 30208709 DOI: 10.1021/acs.jpca.8b07532] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Vibrational spectra of protonated tryptophan were recorded by predissociation of H2 messenger tags using cryogenic ion traps. We explore the issue of messenger induced spectral changes by solvating TrpH+(H2) n with n = 1-5 to obtain single photon vibrational spectra of TrpH+ and of its partly deuterated isotopomer in the spectral region of 800-4400 cm-1. Depending on the number of messenger molecules, the spectra of several conformational isomers associated with multiple H2 binding locations along with two natural conformations of TrpH+ were found using the two photon MS3IR2 conformational hole burning method. Most probable messenger positions were established by comparison with predictions from DFT calculations on various candidate structures. Mechanical anharmonicity effects associated with the charged amino group were modeled by Born-Oppenheimer ab initio molecular dynamics. The spectra of TrpH+(H2O) m=1,2, recorded by infrared multiphoton dissociation (IRMPD), reveal broad features in the NH stretching region of the NH3+ group, indicating strong hydrogen bonding in acceptor-donor configuration with the benzene ring for the first water molecule, while the second water appears to attach to a less strongly perturbing site, yielding unique transitions associated with the free OH stretching fundamentals. We discuss the structural deformations induced by the water molecules and compare our results to recent experiments on similar hydrated cationic systems.
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Affiliation(s)
- Steffen Spieler
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Chinh H Duong
- Sterling Chemistry Laboratory , Yale University , 225 Prospect Street , New Haven , Connecticut 06520 , United States
| | - Alexander Kaiser
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Felix Duensing
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Katharina Geistlinger
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Moritz Fischer
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
| | - Nan Yang
- Sterling Chemistry Laboratory , Yale University , 225 Prospect Street , New Haven , Connecticut 06520 , United States
| | - S Sunil Kumar
- Department of Physics , Indian Institute of Science Education and Research , Tirupati, Rami Reddy Nagar, Karakambadi Road , Mangalam (P.O.) Tirupati 517507 , Andhra Pradesh , India
| | - Mark A Johnson
- Sterling Chemistry Laboratory , Yale University , 225 Prospect Street , New Haven , Connecticut 06520 , United States
| | - Roland Wester
- Institut für Ionenphysik und Angewandte Physik , Universität Innsbruck , Technikerstraße 25 , 6020 Innsbruck , Austria
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75
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Ahmadi M, Alves BXR, Baker CJ, Bertsche W, Capra A, Carruth C, Cesar CL, Charlton M, Cohen S, Collister R, Eriksson S, Evans A, Evetts N, Fajans J, Friesen T, Fujiwara MC, Gill DR, Hangst JS, Hardy WN, Hayden ME, Hunter ED, Isaac CA, Johnson MA, Jones JM, Jones SA, Jonsell S, Khramov A, Knapp P, Kurchaninov L, Madsen N, Maxwell D, McKenna JTK, Menary S, Michan JM, Momose T, Munich JJ, Olchanski K, Olin A, Pusa P, Rasmussen CØ, Robicheaux F, Sacramento RL, Sameed M, Sarid E, Silveira DM, Starko DM, Stutter G, So C, Tharp TD, Thompson RI, van der Werf DP, Wurtele JS. Observation of the 1S-2P Lyman-α transition in antihydrogen. Nature 2018; 561:211-215. [PMID: 30135588 PMCID: PMC6786973 DOI: 10.1038/s41586-018-0435-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Accepted: 07/05/2018] [Indexed: 11/09/2022]
Abstract
In 1906, Theodore Lyman discovered his eponymous series of transitions in the extreme-ultraviolet region of the atomic hydrogen spectrum1,2. The patterns in the hydrogen spectrum helped to establish the emerging theory of quantum mechanics, which we now know governs the world at the atomic scale. Since then, studies involving the Lyman-α line-the 1S-2P transition at a wavelength of 121.6 nanometres-have played an important part in physics and astronomy, as one of the most fundamental atomic transitions in the Universe. For example, this transition has long been used by astronomers studying the intergalactic medium and testing cosmological models via the so-called 'Lyman-α forest'3 of absorption lines at different redshifts. Here we report the observation of the Lyman-α transition in the antihydrogen atom, the antimatter counterpart of hydrogen. Using narrow-line-width, nanosecond-pulsed laser radiation, the 1S-2P transition was excited in magnetically trapped antihydrogen. The transition frequency at a field of 1.033 tesla was determined to be 2,466,051.7 ± 0.12 gigahertz (1σ uncertainty) and agrees with the prediction for hydrogen to a precision of 5 × 10-8. Comparisons of the properties of antihydrogen with those of its well-studied matter equivalent allow precision tests of fundamental symmetries between matter and antimatter. Alongside the ground-state hyperfine4,5 and 1S-2S transitions6,7 recently observed in antihydrogen, the Lyman-α transition will permit laser cooling of antihydrogen8,9, thus providing a cold and dense sample of anti-atoms for precision spectroscopy and gravity measurements10. In addition to the observation of this fundamental transition, this work represents both a decisive technological step towards laser cooling of antihydrogen, and the extension of antimatter spectroscopy to quantum states possessing orbital angular momentum.
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Affiliation(s)
- M Ahmadi
- Department of Physics, University of Liverpool, Liverpool, UK
| | - B X R Alves
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - C J Baker
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - W Bertsche
- School of Physics and Astronomy, University of Manchester, Manchester, UK
- Cockcroft Institute, Sci-Tech Daresbury, Warrington, UK
| | - A Capra
- TRIUMF, Vancouver, British Columbia, Canada
| | - C Carruth
- Department of Physics, University of California at Berkeley, Berkeley, CA, USA
| | - C L Cesar
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - M Charlton
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - S Cohen
- Department of Physics, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | | | - S Eriksson
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - A Evans
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta, Canada
| | - N Evetts
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada
| | - J Fajans
- Department of Physics, University of California at Berkeley, Berkeley, CA, USA
| | - T Friesen
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta, Canada
| | | | - D R Gill
- TRIUMF, Vancouver, British Columbia, Canada
| | - J S Hangst
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark.
| | - W N Hardy
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada
| | - M E Hayden
- Department of Physics, Simon Fraser University, Burnaby, British Columbia, Canada
| | - E D Hunter
- Department of Physics, University of California at Berkeley, Berkeley, CA, USA
| | - C A Isaac
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - M A Johnson
- School of Physics and Astronomy, University of Manchester, Manchester, UK
- Cockcroft Institute, Sci-Tech Daresbury, Warrington, UK
| | - J M Jones
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - S A Jones
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - S Jonsell
- Department of Physics, Stockholm University, Stockholm, Sweden
| | - A Khramov
- TRIUMF, Vancouver, British Columbia, Canada
| | - P Knapp
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | | | - N Madsen
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - D Maxwell
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | | | - S Menary
- Department of Physics and Astronomy, York University, Toronto, Ontario, Canada
| | - J M Michan
- TRIUMF, Vancouver, British Columbia, Canada
- École Polytechnique Fédérale de Lausanne (EPFL), Swiss Plasma Center (SPC), Lausanne, Switzerland
| | - T Momose
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada.
- Department of Chemistry, University of British Columbia, Vancouver, British Columbia, Canada.
| | - J J Munich
- Department of Physics, Simon Fraser University, Burnaby, British Columbia, Canada
| | | | - A Olin
- TRIUMF, Vancouver, British Columbia, Canada
- Department of Physics and Astronomy, University of Victoria, Victoria, British Columbia, Canada
| | - P Pusa
- Department of Physics, University of Liverpool, Liverpool, UK
| | - C Ø Rasmussen
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - F Robicheaux
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN, USA
| | - R L Sacramento
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - M Sameed
- School of Physics and Astronomy, University of Manchester, Manchester, UK
| | | | - D M Silveira
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - D M Starko
- Department of Physics and Astronomy, York University, Toronto, Ontario, Canada
| | - G Stutter
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - C So
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta, Canada
| | - T D Tharp
- Physics Department, Marquette University, Milwaukee, WI, USA
| | - R I Thompson
- TRIUMF, Vancouver, British Columbia, Canada
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta, Canada
| | - D P van der Werf
- Department of Physics, College of Science, Swansea University, Swansea, UK
- IRFU, CEA/Saclay, Gif-sur-Yvette Cedex, France
| | - J S Wurtele
- Department of Physics, University of California at Berkeley, Berkeley, CA, USA
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76
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Constantine AH, Kempny A, Swan L, Alonso-Gonzalez R, Rafiq I, Johnson MA, Wort SJ, Gatzoulis MA, Dimopoulos K. P6189Pregnancy in adults with congenital heart disease in England between 1997 and 2015: Clinical outcomes and risk factors for the peri-partum period. Eur Heart J 2018. [DOI: 10.1093/eurheartj/ehy566.p6189] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- A H Constantine
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
| | - A Kempny
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
| | - L Swan
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
| | - R Alonso-Gonzalez
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
| | - I Rafiq
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
| | - M A Johnson
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
| | - S J Wort
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
| | - M A Gatzoulis
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
| | - K Dimopoulos
- Royal Brompton Hospital, Adult Congenital Heart Centre and National Centre for Pulmonary Hypertension, London, United Kingdom
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77
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Thomas DA, Marianski M, Mucha E, Meijer G, Johnson MA, von Helden G. Ground‐State Structure of the Proton‐Bound Formate Dimer by Cold‐Ion Infrared Action Spectroscopy. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201805436] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Daniel A. Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Mateusz Marianski
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Mark A. Johnson
- Sterling Chemistry Laboratory Yale University 225 Prospect Street New Haven CT 06520 USA
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
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78
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Thomas DA, Marianski M, Mucha E, Meijer G, Johnson MA, von Helden G. Ground‐State Structure of the Proton‐Bound Formate Dimer by Cold‐Ion Infrared Action Spectroscopy. Angew Chem Int Ed Engl 2018; 57:10615-10619. [DOI: 10.1002/anie.201805436] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Indexed: 11/11/2022]
Affiliation(s)
- Daniel A. Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Mateusz Marianski
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Mark A. Johnson
- Sterling Chemistry Laboratory Yale University 225 Prospect Street New Haven CT 06520 USA
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
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79
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Yang N, Duong CH, Kelleher PJ, Johnson MA. Unmasking Rare, Large-Amplitude Motions in D 2-Tagged I -·(H 2O) 2 Isotopomers with Two-Color, Infrared-Infrared Vibrational Predissociation Spectroscopy. J Phys Chem Lett 2018; 9:3744-3750. [PMID: 29924622 DOI: 10.1021/acs.jpclett.8b01485] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We describe a two-color, isotopomer-selective infrared-infrared population-labeling method that can monitor very slow spectral diffusion of OH oscillators in H-bonded networks and apply it to the I-·(HDO)·(D2O) and I-·(H2O)·(D2O) systems, which are cryogenically cooled and D2-tagged at an ion trap temperature of 15 K. These measurements reveal very large (>400 cm-1), spontaneous spectral shifts despite the fact that the predissociation spectra in the OH stretching region of both isotopologues are sharp and readily assigned to four fundamentals of largely decoupled OH oscillators held in a cyclic H-bonded network. This spectral diffusion is not observed in the untagged isotopologues of the dihydrate clusters that are generated under the same source conditions but does become apparent at about 75 K. These results are discussed in the context of the large-amplitude "jump" mechanism for H-bond relaxation dynamics advanced by Laage and Hynes in an experimental scenario where rare events can be captured by following the migration of OH groups among the four available positions in the quasi-rigid equilibrium structure.
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Affiliation(s)
- Nan Yang
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Chinh H Duong
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Patrick J Kelleher
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
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80
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Ma X, Yang N, Johnson MA, Hase WL. Anharmonic Densities of States for Vibrationally Excited I–(H2O), (H2O)2, and I–(H2O)2. J Chem Theory Comput 2018; 14:3986-3997. [DOI: 10.1021/acs.jctc.8b00300] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xinyou Ma
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
| | - Nan Yang
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - William L. Hase
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409, United States
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81
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Menges FS, Zeng HJ, Kelleher PJ, Gorlova O, Johnson MA, Niemann T, Strate A, Ludwig R. Structural Motifs in Cold Ternary Ion Complexes of Hydroxyl-Functionalized Ionic Liquids: Isolating the Role of Cation-Cation Interactions. J Phys Chem Lett 2018; 9:2979-2984. [PMID: 29750531 DOI: 10.1021/acs.jpclett.8b01130] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We address the competition between intermolecular forces underlying the recent observation that ionic liquids (ILs) with a hydroxyl-functionalized cation can form domains with attractive interactions between the nominally repulsive positively charged constituents. Here we show that this behavior is present even in the isolated ternary (HEMIm+)2NTf2- complex (HEMIm+ = 1-(2-hydroxyethyl)-3-methylimidazolium) cooled to about 35 K in a photodissociation mass spectrometer. Of the three isomers isolated by double resonance techniques, one is identified to exhibit direct contact between the cations. This linkage involves a cooperative H-bond wherein the OH group on one cation binds to the OH group on the other, which then attaches to the basic N atom of the anion. Formation of this motif comes at the expense of the usually dominant interaction of the acidic C(2)H group on the Im ring with molecular anions, as evidenced by isomer-dependent shifts in the C(2)H vibrational fundamentals.
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Affiliation(s)
- Fabian S Menges
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Helen J Zeng
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Patrick J Kelleher
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Olga Gorlova
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Thomas Niemann
- Department of Chemistry , University of Rostock , 18059 Rostock , Germany
- Leibniz-Institut für Katalyse e.V. , Albert-Einstein-Strasse 29a , 18059 Rostock , Germany
| | - Anne Strate
- Department of Chemistry , University of Rostock , 18059 Rostock , Germany
- Leibniz-Institut für Katalyse e.V. , Albert-Einstein-Strasse 29a , 18059 Rostock , Germany
| | - Ralf Ludwig
- Department of Chemistry , University of Rostock , 18059 Rostock , Germany
- Leibniz-Institut für Katalyse e.V. , Albert-Einstein-Strasse 29a , 18059 Rostock , Germany
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82
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Marsman D, Belsky DW, Gregori D, Johnson MA, Low Dog T, Meydani S, Pigat S, Sadana R, Shao A, Griffiths JC. Healthy ageing: the natural consequences of good nutrition-a conference report. Eur J Nutr 2018; 57:15-34. [PMID: 29799073 PMCID: PMC5984649 DOI: 10.1007/s00394-018-1723-0] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Many countries are witnessing a marked increase in longevity and with this increased lifespan and the desire for healthy ageing, many, however, suffer from the opposite including mental and physical deterioration, lost productivity and quality of life, and increased medical costs. While adequate nutrition is fundamental for good health, it remains unclear what impact various dietary interventions may have on prolonging good quality of life. Studies which span age, geography and income all suggest that access to quality foods, host immunity and response to inflammation/infections, impaired senses (i.e., sight, taste, smell) or mobility are all factors which can limit intake or increase the body's need for specific micronutrients. New clinical studies of healthy ageing are needed and quantitative biomarkers are an essential component, particularly tools which can measure improvements in physiological integrity throughout life, thought to be a primary contributor to a long and productive life (a healthy "lifespan"). A framework for progress has recently been proposed in a WHO report which takes a broad, person-centered focus on healthy ageing, emphasizing the need to better understand an individual's intrinsic capacity, their functional abilities at various life stages, and the impact by mental, and physical health, and the environments they inhabit.
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Affiliation(s)
- D Marsman
- Procter & Gamble, Cincinnati, OH, USA
| | - D W Belsky
- Duke University, Raleigh-Durham, NC, USA
| | | | | | - T Low Dog
- Integrative Medicine Concepts, Tucson, AZ, USA
| | | | - S Pigat
- Creme Global, Dublin, Ireland
| | - R Sadana
- World Health Organization, Geneva, Switzerland
| | - A Shao
- Amway/Nutrilite, Buena Park, CA, USA
| | - J C Griffiths
- Council for Responsible Nutrition-International, Washington, DC, USA.
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83
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Ahmadi M, Alves BXR, Baker CJ, Bertsche W, Capra A, Carruth C, Cesar CL, Charlton M, Cohen S, Collister R, Eriksson S, Evans A, Evetts N, Fajans J, Friesen T, Fujiwara MC, Gill DR, Hangst JS, Hardy WN, Hayden ME, Isaac CA, Johnson MA, Jones JM, Jones SA, Jonsell S, Khramov A, Knapp P, Kurchaninov L, Madsen N, Maxwell D, McKenna JTK, Menary S, Momose T, Munich JJ, Olchanski K, Olin A, Pusa P, Rasmussen CØ, Robicheaux F, Sacramento RL, Sameed M, Sarid E, Silveira DM, Stutter G, So C, Tharp TD, Thompson RI, van der Werf DP, Wurtele JS. Characterization of the 1S-2S transition in antihydrogen. Nature 2018; 557:71-75. [PMID: 29618820 PMCID: PMC6784861 DOI: 10.1038/s41586-018-0017-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Accepted: 03/06/2018] [Indexed: 11/09/2022]
Abstract
In 1928, Dirac published an equation 1 that combined quantum mechanics and special relativity. Negative-energy solutions to this equation, rather than being unphysical as initially thought, represented a class of hitherto unobserved and unimagined particles-antimatter. The existence of particles of antimatter was confirmed with the discovery of the positron 2 (or anti-electron) by Anderson in 1932, but it is still unknown why matter, rather than antimatter, survived after the Big Bang. As a result, experimental studies of antimatter3-7, including tests of fundamental symmetries such as charge-parity and charge-parity-time, and searches for evidence of primordial antimatter, such as antihelium nuclei, have high priority in contemporary physics research. The fundamental role of the hydrogen atom in the evolution of the Universe and in the historical development of our understanding of quantum physics makes its antimatter counterpart-the antihydrogen atom-of particular interest. Current standard-model physics requires that hydrogen and antihydrogen have the same energy levels and spectral lines. The laser-driven 1S-2S transition was recently observed 8 in antihydrogen. Here we characterize one of the hyperfine components of this transition using magnetically trapped atoms of antihydrogen and compare it to model calculations for hydrogen in our apparatus. We find that the shape of the spectral line agrees very well with that expected for hydrogen and that the resonance frequency agrees with that in hydrogen to about 5 kilohertz out of 2.5 × 1015 hertz. This is consistent with charge-parity-time invariance at a relative precision of 2 × 10-12-two orders of magnitude more precise than the previous determination 8 -corresponding to an absolute energy sensitivity of 2 × 10-20 GeV.
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Affiliation(s)
- M Ahmadi
- Department of Physics, University of Liverpool, Liverpool, UK
| | - B X R Alves
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - C J Baker
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - W Bertsche
- School of Physics and Astronomy, University of Manchester, Manchester, UK
- Cockcroft Institute, Sci-Tech Daresbury, Warrington, UK
| | - A Capra
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
| | - C Carruth
- Department of Physics, University of California at Berkeley, Berkeley, CA, USA
| | - C L Cesar
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - M Charlton
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - S Cohen
- Department of Physics, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | - R Collister
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
| | - S Eriksson
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - A Evans
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta, Canada
| | - N Evetts
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada
| | - J Fajans
- Department of Physics, University of California at Berkeley, Berkeley, CA, USA
| | - T Friesen
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - M C Fujiwara
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
| | - D R Gill
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
| | - J S Hangst
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark.
| | - W N Hardy
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada
| | - M E Hayden
- Department of Physics, Simon Fraser University, Burnaby, British Columbia, Canada
| | - C A Isaac
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - M A Johnson
- School of Physics and Astronomy, University of Manchester, Manchester, UK
- Cockcroft Institute, Sci-Tech Daresbury, Warrington, UK
| | - J M Jones
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - S A Jones
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - S Jonsell
- Department of Physics, Stockholm University, Stockholm, Sweden
| | - A Khramov
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
| | - P Knapp
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - L Kurchaninov
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
| | - N Madsen
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - D Maxwell
- Department of Physics, College of Science, Swansea University, Swansea, UK
| | - J T K McKenna
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
| | - S Menary
- Department of Physics and Astronomy, York University, Toronto, Ontario, Canada
| | - T Momose
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia, Canada
| | - J J Munich
- Department of Physics, Simon Fraser University, Burnaby, British Columbia, Canada
| | - K Olchanski
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
| | - A Olin
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia, Canada
- Department of Physics and Astronomy, University of Victoria, Victoria, British Columbia, Canada
| | - P Pusa
- Department of Physics, University of Liverpool, Liverpool, UK
| | - C Ø Rasmussen
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - F Robicheaux
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN, USA
| | - R L Sacramento
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - M Sameed
- Department of Physics, College of Science, Swansea University, Swansea, UK
- School of Physics and Astronomy, University of Manchester, Manchester, UK
| | | | - D M Silveira
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - G Stutter
- Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark
| | - C So
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta, Canada
| | - T D Tharp
- Physics Department, Marquette University, Milwaukee, WI, USA
| | - R I Thompson
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta, Canada
| | - D P van der Werf
- Department of Physics, College of Science, Swansea University, Swansea, UK
- IRFU, CEA/Saclay, Gif-sur-Yvette Cedex, France
| | - J S Wurtele
- Department of Physics, University of California at Berkeley, Berkeley, CA, USA
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84
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Craig SM, Johnson CJ, Ranasinghe DS, Perera A, Bartlett RJ, Berman MR, Johnson MA. Vibrational Characterization of Radical Ion Adducts between Imidazole and CO 2. J Phys Chem A 2018; 122:3805-3810. [PMID: 29608067 DOI: 10.1021/acs.jpca.8b01883] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We address the molecular level origins of the dramatic difference in the catalytic mechanisms of CO2 activation by the seemingly similar molecules pyridine (Py) and imidazole (Im). This is accomplished by comparing the fundamental interactions of CO2 radical anions with Py and Im in the isolated, gas phase PyCO2- and ImCO2- complexes. These species are prepared by condensation of the neutral compounds onto a (CO2) n- cluster ion beam by entrainment in a supersonic jet ion source. The structures of the anionic complexes are determined by theoretical analysis of their vibrational spectra, obtained by IR photodissociation of weakly bound CO2 molecules in a photofragmentation mass spectrometer. Although the radical PyCO2- system adopts a carbamate-like configuration corresponding to formation of an N-C covalent bond, the ImCO2- species is revealed to be best described as an ion-molecule complex in which an oxygen atom in the CO2- radical anion is H-bonded to the NH group. Species that feature a covalent N-C interaction in ImCO2- are calculated to be locally stable structures, but are much higher in energy than the largely electrostatically bound ion-molecule complex. These results support the suggestion from solution phase electrochemical studies (Bocarsly et al. ACS Catal. 2012, 2, 1684-1692) that the N atoms are not directly involved in the catalytic activation of CO2 by Im.
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Affiliation(s)
- Stephanie M Craig
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
| | - Christopher J Johnson
- Department of Chemistry , Stony Brook University , Stony Brook , New York 11794 , United States
| | - Duminda S Ranasinghe
- Department of Chemistry , University of Florida , Gainesville , Florida 32611 , United States
| | - Ajith Perera
- Department of Chemistry , University of Florida , Gainesville , Florida 32611 , United States
| | - Rodney J Bartlett
- Department of Chemistry , University of Florida , Gainesville , Florida 32611 , United States
| | - Michael R Berman
- Air Force Office of Scientific Research , Arlington , Virginia 22203 , United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory , Yale University , New Haven , Connecticut 06520 , United States
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85
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DeVine JA, Weichman ML, Xie C, Babin MC, Johnson MA, Ma J, Guo H, Neumark DM. Autodetachment from Vibrationally Excited Vinylidene Anions. J Phys Chem Lett 2018; 9:1058-1063. [PMID: 29438618 DOI: 10.1021/acs.jpclett.8b00144] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Slow electron velocity-map imaging of the cryogenically cooled H2CC¯ anion reveals a strong dependence of its high-resolution photoelectron spectrum on detachment photon energy in two specific ranges, from 4000 to 4125 cm-1 and near 5020 cm-1. This effect is attributed to vibrational excitation of the anion followed by autodetachment to H2CC + e¯. In the lower energy range, the electron kinetic energy (eKE) distributions are dominated by two features that occur at constant eKEs of 114(3) and 151.9(14) cm-1 rather than constant electron binding energies, as is typically seen for direct photodetachment. These features are attributed to ΔJ = ΔK = 0 autodetachment transitions from two vibrationally excited anion states. The higher energy resonance autodetaches to neutral eigenstates with amplitude in the theoretically predicted shallow well lying along the vinylidene-acetylene isomerization coordinate. Calculations provide assignments of all autodetaching anion states and show that the observed autodetachment is facilitated by an intersection of the anion and neutral surfaces.
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Affiliation(s)
- Jessalyn A DeVine
- Department of Chemistry, University of California , Berkeley, California 94720, United States
| | - Marissa L Weichman
- Department of Chemistry, University of California , Berkeley, California 94720, United States
| | - Changjian Xie
- Department of Chemistry and Chemical Biology, University of New Mexico , Albuquerque, New Mexico 87131, United States
| | - Mark C Babin
- Department of Chemistry, University of California , Berkeley, California 94720, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University , New Haven, Connecticut 06520, United States
| | - Jianyi Ma
- Institute of Atomic and Molecular Physics, Sichuan University , Chengdu, Sichuan 610065, China
| | - Hua Guo
- Department of Chemistry and Chemical Biology, University of New Mexico , Albuquerque, New Mexico 87131, United States
| | - Daniel M Neumark
- Department of Chemistry, University of California , Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
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86
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Ahmadi M, Alves BXR, Baker CJ, Bertsche W, Butler E, Capra A, Carruth C, Cesar CL, Charlton M, Cohen S, Collister R, Eriksson S, Evans A, Evetts N, Fajans J, Friesen T, Fujiwara MC, Gill DR, Gutierrez A, Hangst JS, Hardy WN, Hayden ME, Isaac CA, Ishida A, Johnson MA, Jones SA, Jonsell S, Kurchaninov L, Madsen N, Mathers M, Maxwell D, McKenna JTK, Menary S, Michan JM, Momose T, Munich JJ, Nolan P, Olchanski K, Olin A, Pusa P, Rasmussen CØ, Robicheaux F, Sacramento RL, Sameed M, Sarid E, Silveira DM, Stracka S, Stutter G, So C, Tharp TD, Thompson JE, Thompson RI, van der Werf DP, Wurtele JS. Erratum: Observation of the hyperfine spectrum of antihydrogen. Nature 2018; 553:530. [PMID: 29258296 DOI: 10.1038/nature24663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
This corrects the article DOI: 10.1038/nature23446.
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87
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Ahmadi M, Alves BXR, Baker CJ, Bertsche W, Capra A, Carruth C, Cesar CL, Charlton M, Cohen S, Collister R, Eriksson S, Evans A, Evetts N, Fajans J, Friesen T, Fujiwara MC, Gill DR, Hangst JS, Hardy WN, Hayden ME, Isaac CA, Johnson MA, Jones SA, Jonsell S, Kurchaninov L, Madsen N, Mathers M, Maxwell D, McKenna JTK, Menary S, Momose T, Munich JJ, Olchanski K, Olin A, Pusa P, Rasmussen CØ, Robicheaux F, Sacramento RL, Sameed M, Sarid E, Silveira DM, So C, Stutter G, Tharp TD, Thompson JE, Thompson RI, van der Werf DP, Wurtele JS. Enhanced Control and Reproducibility of Non-Neutral Plasmas. Phys Rev Lett 2018; 120:025001. [PMID: 29376718 DOI: 10.1103/physrevlett.120.025001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Indexed: 06/07/2023]
Abstract
The simultaneous control of the density and particle number of non-neutral plasmas confined in Penning-Malmberg traps is demonstrated. Control is achieved by setting the plasma's density by applying a rotating electric field while simultaneously fixing its axial potential via evaporative cooling. This novel method is particularly useful for stabilizing positron plasmas, as the procedures used to collect positrons from radioactive sources typically yield plasmas with variable densities and particle numbers; it also simplifies optimization studies that require plasma parameter scans. The reproducibility achieved by applying this technique to the positron and electron plasmas used by the ALPHA antihydrogen experiment at CERN, combined with other developments, contributed to a 10-fold increase in the antiatom trapping rate.
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Affiliation(s)
- M Ahmadi
- Department of Physics, University of Liverpool, Liverpool L69 7ZE, United Kingdom
| | - B X R Alves
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - C J Baker
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
| | - W Bertsche
- School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, United Kingdom
- Cockcroft Institute, Sci-Tech Daresbury, Warrington WA4 4AD, United Kingdom
| | - A Capra
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - C Carruth
- Department of Physics, University of California at Berkeley, Berkeley, California 94720-7300, USA
| | - C L Cesar
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Brazil
| | - M Charlton
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
| | - S Cohen
- Department of Physics, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - R Collister
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - S Eriksson
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
| | - A Evans
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta T2N 1N4, Canada
| | - N Evetts
- Department of Physics and Astronomy, The University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - J Fajans
- Department of Physics, University of California at Berkeley, Berkeley, California 94720-7300, USA
| | - T Friesen
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - M C Fujiwara
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - D R Gill
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - J S Hangst
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - W N Hardy
- Department of Physics and Astronomy, The University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - M E Hayden
- Department of Physics, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada
| | - C A Isaac
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
| | - M A Johnson
- School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, United Kingdom
| | - S A Jones
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
| | - S Jonsell
- Department of Physics, Stockholm University, SE-10691 Stockholm, Sweden
| | - L Kurchaninov
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - N Madsen
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
| | - M Mathers
- Department of Physics and Astronomy, York University, Toronto, Ontario M3J 1P3, Canada
| | - D Maxwell
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
| | - J T K McKenna
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - S Menary
- Department of Physics and Astronomy, York University, Toronto, Ontario M3J 1P3, Canada
| | - T Momose
- Department of Chemistry, The University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - J J Munich
- Department of Physics, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada
| | - K Olchanski
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - A Olin
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
- Department of Physics and Astronomy, University of Victoria, Victoria, British Columbia V8P 5C2, Canada
| | - P Pusa
- Department of Physics, University of Liverpool, Liverpool L69 7ZE, United Kingdom
| | - C Ø Rasmussen
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - F Robicheaux
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
| | - R L Sacramento
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Brazil
| | - M Sameed
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
- School of Physics and Astronomy, University of Manchester, Manchester M13 9PL, United Kingdom
| | - E Sarid
- Soreq NRC, Yavne 81800, Israel
| | - D M Silveira
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Brazil
| | - C So
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta T2N 1N4, Canada
| | - G Stutter
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - T D Tharp
- Physics Department, Marquette University, P.O. Box 1881,Milwaukee, Wisconsin 53201-1881, USA
| | - J E Thompson
- Department of Physics and Astronomy, York University, Toronto, Ontario M3J 1P3, Canada
| | - R I Thompson
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta T2N 1N4, Canada
| | - D P van der Werf
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, United Kingdom
- IRFU, CEA/Saclay, F-91191 Gif-sur-Yvette Cedex, France
| | - J S Wurtele
- Department of Physics, University of California at Berkeley, Berkeley, California 94720-7300, USA
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88
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Hirshberg B, Rossich Molina E, Götz AW, Hammerich AD, Nathanson GM, Bertram TH, Johnson MA, Gerber RB. N2O5at water surfaces: binding forces, charge separation, energy accommodation and atmospheric implications. Phys Chem Chem Phys 2018; 20:17961-17976. [DOI: 10.1039/c8cp03022g] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Studying the interactions between N2O5and water in nano-sized clusters, in bulk and on the surface of water.
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Affiliation(s)
- Barak Hirshberg
- The Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics
- the Hebrew University
- Jerusalem 9190401
- Israel
| | - Estefanía Rossich Molina
- The Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics
- the Hebrew University
- Jerusalem 9190401
- Israel
| | - Andreas W. Götz
- San Diego Supercomputer Center
- University of California
- San Diego, La Jolla
- USA
| | | | | | | | | | - R. Benny Gerber
- The Institute of Chemistry and the Fritz Haber Center for Molecular Dynamics
- the Hebrew University
- Jerusalem 9190401
- Israel
- Department of Chemistry, University of California, Irvine
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89
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90
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Gorlova O, Craig SM, Johnson MA. Communication: Spectroscopic characterization of a strongly interacting C(2)H group on the EMIM+ cation in the (EMIM+)2X− (X = BF4, Cl, Br, and I) ternary building blocks of ionic liquids. J Chem Phys 2017; 147:231101. [DOI: 10.1063/1.5009009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Olga Gorlova
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520-8107, USA
| | - Stephanie M. Craig
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520-8107, USA
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, New Haven, Connecticut 06520-8107, USA
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91
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Yang N, Duong CH, Kelleher PJ, Johnson MA, McCoy AB. Isolation of site-specific anharmonicities of individual water molecules in the I−·(H2O)2 complex using tag-free, isotopomer selective IR-IR double resonance. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.09.042] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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92
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Gorlova O, Colvin SM, Brathwaite A, Menges FS, Craig SM, Miller SJ, Johnson MA. Identification and Partial Structural Characterization of Mass Isolated Valsartan and Its Metabolite with Messenger Tagging Vibrational Spectroscopy. J Am Soc Mass Spectrom 2017; 28:2414-2422. [PMID: 28801884 DOI: 10.1007/s13361-017-1767-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Revised: 07/14/2017] [Accepted: 07/20/2017] [Indexed: 06/07/2023]
Abstract
Recent advances in the coupling of vibrational spectroscopy with mass spectrometry create new opportunities for the structural characterization of metabolites with great sensitivity. Previous studies have demonstrated this scheme on 300 K ions using very high power free electron lasers in the fingerprint region of the infrared. Here we extend the scope of this approach to a single investigator scale as well as extend the spectral range to include the OH stretching fundamentals. This is accomplished by detecting the IR absorptions in a linear action regime by photodissociation of weakly bound N2 molecules, which are attached to the target ions in a cryogenically cooled, rf ion trap. We consider the specific case of the widely used drug Valsartan and two isomeric forms of its metabolite. Advantages and challenges of the cold ion approach are discussed, including disentangling the role of conformers and the strategic choices involved in the selection of the charging mechanism that optimize spectral differentiation among candidate structural isomers. In this case, the Na+ complexes are observed to yield sharp resonances in the high frequency NH and OH stretching regions, which can be used to easily differentiate between two isomers of the metabolite. Graphical Abstract ᅟ.
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Affiliation(s)
- Olga Gorlova
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Sean M Colvin
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Antonio Brathwaite
- College of Science and Mathematics, University of the Virgin Islands, St. Thomas, 00802, Virgin Islands (U.S.)
| | - Fabian S Menges
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | | | - Scott J Miller
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA
| | - Mark A Johnson
- Department of Chemistry, Yale University, New Haven, CT, 06520, USA.
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93
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Cahn P, Kaplan R, Sax PE, Squires K, Molina JM, Avihingsanon A, Ratanasuwan W, Rojas E, Rassool M, Bloch M, Vandekerckhove L, Ruane P, Yazdanpanah Y, Katlama C, Xu X, Rodgers A, East L, Wenning L, Rawlins S, Homony B, Sklar P, Nguyen BY, Leavitt R, Teppler H, Cahn PE, Cassetti I, Losso M, Bloch MT, Roth N, McMahon J, Moore RJ, Smith D, Clumeck N, Vanderkerckhove L, Vandercam B, Moutschen M, Baril J, Conway B, Smaill F, Smith GHR, Rachlis A, Walmsley SL, Perez C, Wolff M, Lasso MF, Chahin CE, Velez JD, Sussmann O, Reynes J, Katlama C, Yazdanpanah Y, Ferret S, Durant J, Duvivier C, Poizot-Martin I, Ajana F, Rockstroh JK, Faetkanheuer G, Esser S, Jaeger H, Degen O, Bickel M, Bogner J, Arasteh K, Hartl H, Stoehr A, Rojas EM, Arathoon E, Gonzalez LD, Mejia CR, Shahar E, Turner D, Levy I, Sthoeger Z, Elinav H, Gori A, Monforte AD, Di Perri G, Lazzarin A, Rizzardini G, Antinori A, Celesia BM, Maggiolo F, Chow TS, Lee CKC, Azwa RISR, Mustafa M, Oyanguren M, Castillo RA, Hercilla L, Echiverri C, Maltez F, da Cunha JGS, Neves I, Teofilo E, Serrao R, Nagimova F, Khaertynova I, Orlova-Morozova E, Voronin E, Sotnikov V, Yakovlev AA, Zakharova NG, Tsybakova OA, Botes ME, Mohapi L, Kaplan R, Rassool MS, Arribas JR, Gatell JM, Negredo E, Ortega E, Troya J, Berenguer J, Aguirrebengoa K, Antela A, Calmy A, Cavassini M, Rauch A, Stoeckle M, Sheng WH, Lin HH, Tsai HC, Changpradub D, Avihingsanon A, Kiertiburanakul S, Ratanasuwan W, Nelson MR, Clarke A, Ustianowski A, Winston A, Johnson MA, Asmuth DM, Cade J, Gallant JE, Ruane PJ, Kumar PN, Luque AE, Panther L, Tashima KT, Ward D, Berger DS, Dietz CA, Fichtenbaum C, Gupta S, Mullane KM, Novak RM, Sweet DE, Crofoot GE, Hagins DP, Lewis ST, McDonald CK, DeJesus E, Sloan L, Prelutsky DJ, Rondon JC, Henn S, Scarsella AJ, Morales JO, Ramirez, Santiago L, Zorrilla CD, Saag MS, Hsiao CB. Raltegravir 1200 mg once daily versus raltegravir 400 mg twice daily, with tenofovir disoproxil fumarate and emtricitabine, for previously untreated HIV-1 infection: a randomised, double-blind, parallel-group, phase 3, non-inferiority trial. The Lancet HIV 2017; 4:e486-e494. [DOI: 10.1016/s2352-3018(17)30128-5] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2017] [Revised: 06/22/2017] [Accepted: 06/23/2017] [Indexed: 12/20/2022]
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94
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Ahmadi M, Alves BXR, Baker CJ, Bertsche W, Butler E, Capra A, Carruth C, Cesar CL, Charlton M, Cohen S, Collister R, Eriksson S, Evans A, Evetts N, Fajans J, Friesen T, Fujiwara MC, Gill DR, Gutierrez A, Hangst JS, Hardy WN, Hayden ME, Isaac CA, Ishida A, Johnson MA, Jones SA, Jonsell S, Kurchaninov L, Madsen N, Mathers M, Maxwell D, McKenna JTK, Menary S, Michan JM, Momose T, Munich JJ, Nolan P, Olchanski K, Olin A, Pusa P, Rasmussen CØ, Robicheaux F, Sacramento RL, Sameed M, Sarid E, Silveira DM, Stracka S, Stutter G, So C, Tharp TD, Thompson JE, Thompson RI, van der Werf DP, Wurtele JS. Observation of the hyperfine spectrum of antihydrogen. Nature 2017; 548:66-69. [PMID: 28770838 DOI: 10.1038/nature23446] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2017] [Accepted: 06/30/2017] [Indexed: 11/09/2022]
Abstract
The observation of hyperfine structure in atomic hydrogen by Rabi and co-workers and the measurement of the zero-field ground-state splitting at the level of seven parts in 1013 are important achievements of mid-twentieth-century physics. The work that led to these achievements also provided the first evidence for the anomalous magnetic moment of the electron, inspired Schwinger's relativistic theory of quantum electrodynamics and gave rise to the hydrogen maser, which is a critical component of modern navigation, geo-positioning and very-long-baseline interferometry systems. Research at the Antiproton Decelerator at CERN by the ALPHA collaboration extends these enquiries into the antimatter sector. Recently, tools have been developed that enable studies of the hyperfine structure of antihydrogen-the antimatter counterpart of hydrogen. The goal of such studies is to search for any differences that might exist between this archetypal pair of atoms, and thereby to test the fundamental principles on which quantum field theory is constructed. Magnetic trapping of antihydrogen atoms provides a means of studying them by combining electromagnetic interaction with detection techniques that are unique to antimatter. Here we report the results of a microwave spectroscopy experiment in which we probe the response of antihydrogen over a controlled range of frequencies. The data reveal clear and distinct signatures of two allowed transitions, from which we obtain a direct, magnetic-field-independent measurement of the hyperfine splitting. From a set of trials involving 194 detected atoms, we determine a splitting of 1,420.4 ± 0.5 megahertz, consistent with expectations for atomic hydrogen at the level of four parts in 104. This observation of the detailed behaviour of a quantum transition in an atom of antihydrogen exemplifies tests of fundamental symmetries such as charge-parity-time in antimatter, and the techniques developed here will enable more-precise such tests.
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Affiliation(s)
- M Ahmadi
- Department of Physics, University of Liverpool, Liverpool L69 7ZE, UK
| | - B X R Alves
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - C J Baker
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - W Bertsche
- School of Physics and Astronomy, University of Manchester, Manchester M12 9PL, UK.,Cockcroft Institute, Sci-Tech Daresbury, Warrington WA4 4AD, UK
| | - E Butler
- Physics Department, CERN, CH-1211 Geneve 23, Switzerland
| | - A Capra
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - C Carruth
- Department of Physics, University of California at Berkeley, Berkeley, California 94720-7300, USA
| | - C L Cesar
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Brazil
| | - M Charlton
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - S Cohen
- Department of Physics, Ben-Gurion University of the Negev, Beer-Sheva 84105, Israel
| | - R Collister
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - S Eriksson
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - A Evans
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta T2N 1N4, Canada
| | - N Evetts
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - J Fajans
- Department of Physics, University of California at Berkeley, Berkeley, California 94720-7300, USA
| | - T Friesen
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - M C Fujiwara
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - D R Gill
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - A Gutierrez
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada.,Department of Medical Physics and Biomedical Engineering, University College London, London WC1E 6BT, UK
| | - J S Hangst
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - W N Hardy
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - M E Hayden
- Department of Physics, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada
| | - C A Isaac
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - A Ishida
- Department of Physics, The University of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo 113-0033, Japan
| | - M A Johnson
- School of Physics and Astronomy, University of Manchester, Manchester M12 9PL, UK.,Cockcroft Institute, Sci-Tech Daresbury, Warrington WA4 4AD, UK
| | - S A Jones
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - S Jonsell
- Department of Physics, Stockholm University, SE-10691 Stockholm, Sweden
| | - L Kurchaninov
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - N Madsen
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - M Mathers
- Department of Physics and Astronomy, York University, Toronto, Ontario M3J 1P3, Canada
| | - D Maxwell
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - J T K McKenna
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - S Menary
- Department of Physics and Astronomy, York University, Toronto, Ontario M3J 1P3, Canada
| | - J M Michan
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada.,École Polytechnique Fédérale de Lausanne (EPFL), Swiss Plasma Center (SPC), Lausanne CH-1015, Switzerland
| | - T Momose
- Department of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada
| | - J J Munich
- Department of Physics, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada
| | - P Nolan
- Department of Physics, University of Liverpool, Liverpool L69 7ZE, UK
| | - K Olchanski
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada
| | - A Olin
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada.,Department of Physics and Astronomy, University of Victoria, Victoria, British Columbia V8P 5C2, Canada
| | - P Pusa
- Department of Physics, University of Liverpool, Liverpool L69 7ZE, UK
| | - C Ø Rasmussen
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - F Robicheaux
- Department of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA
| | - R L Sacramento
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Brazil
| | - M Sameed
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - E Sarid
- Soreq NRC, Yavne 81800, Israel
| | - D M Silveira
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-972, Brazil
| | - S Stracka
- TRIUMF, 4004 Wesbrook Mall, Vancouver, British Columbia V6T 2A3, Canada.,Universita di Pisa and Sezione INFN di Pisa, Largo Pontecorvo 3, 56127 Pisa, Italy
| | - G Stutter
- Department of Physics and Astronomy, Aarhus University, DK-8000 Aarhus C, Denmark
| | - C So
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta T2N 1N4, Canada
| | - T D Tharp
- Physics Department, Marquette University, PO Box 1881, Milwaukee, Wisconsin 53201-1881, USA
| | - J E Thompson
- Department of Physics and Astronomy, York University, Toronto, Ontario M3J 1P3, Canada
| | - R I Thompson
- Department of Physics and Astronomy, University of Calgary, Calgary, Alberta T2N 1N4, Canada
| | - D P van der Werf
- Department of Physics, College of Science, Swansea University, Swansea SA2 8PP, UK.,IRFU, CEA/Saclay, F-91191, Gif-sur-Yvette Cedex, France
| | - J S Wurtele
- Department of Physics, University of California at Berkeley, Berkeley, California 94720-7300, USA
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95
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Munshi M, Craig SM, Berden G, Martens J, DeBlase AF, Foreman DJ, McLuckey SA, Oomens J, Johnson MA. Preparation of Labile Ni +(cyclam) Cations in the Gas Phase Using Electron-Transfer Reduction through Ion-Ion Recombination in an Ion Trap and Structural Characterization with Vibrational Spectroscopy. J Phys Chem Lett 2017; 8:5047-5052. [PMID: 28961009 PMCID: PMC5677246 DOI: 10.1021/acs.jpclett.7b02223] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Accepted: 09/29/2017] [Indexed: 05/31/2023]
Abstract
Gas-phase ion chemistry methods that capture and characterize the degree of activation of small molecules in the active sites of homogeneous catalysts form a powerful new tool to unravel how ligand environments affect reactivity. A key roadblock in this development, however, is the ability to generate the fragile metal oxidation states that are essential for catalytic activity. Here we demonstrate the preparation of the key Ni(I) center in the widely used cyclam scaffold using ion-ion recombination as a gas-phase alternative to electrochemical reduction. The singly charged Ni+(cyclam) coordination complex is generated by electron transfer from fluoranthene and azobenzene anions to doubly charged Ni2+(cyclam), using the electron-transfer dissociation protocol in a commercial quadrupole ion trap instrument and in a custom-built octopole RF ion trap. The successful preparation of the Ni+(cyclam) cation is verified through analysis of its vibrational spectrum obtained using the infrared free electron laser FELIX.
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Affiliation(s)
- Musleh
U. Munshi
- Radboud
University, Institute for Molecules and
Materials, FELIX Laboratory, Toernooiveld
7c, 6525ED Nijmegen, The Netherlands
| | - Stephanie M. Craig
- Sterling
Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
| | - Giel Berden
- Radboud
University, Institute for Molecules and
Materials, FELIX Laboratory, Toernooiveld
7c, 6525ED Nijmegen, The Netherlands
| | - Jonathan Martens
- Radboud
University, Institute for Molecules and
Materials, FELIX Laboratory, Toernooiveld
7c, 6525ED Nijmegen, The Netherlands
| | - Andrew F. DeBlase
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
- Spectral
Energies,
LLC, Beavercreek, Ohio 45430, United States
| | - David J. Foreman
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Scott A. McLuckey
- Department
of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Jos Oomens
- Radboud
University, Institute for Molecules and
Materials, FELIX Laboratory, Toernooiveld
7c, 6525ED Nijmegen, The Netherlands
- van’t
Hoff Institute for Molecular Sciences, University
of Amsterdam, 1098XH Amsterdam, Science Park 908, The Netherlands
| | - Mark A. Johnson
- Sterling
Chemistry Laboratory, Yale University, New Haven, Connecticut 06520, United States
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96
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Kelleher PJ, Menges FS, DePalma JW, Denton JK, Johnson MA, Weddle GH, Hirshberg B, Gerber RB. Trapping and Structural Characterization of the XNO 2·NO 3- (X = Cl, Br, I) Exit Channel Complexes in the Water-Mediated X - + N 2O 5 Reactions with Cryogenic Vibrational Spectroscopy. J Phys Chem Lett 2017; 8:4710-4715. [PMID: 28898581 DOI: 10.1021/acs.jpclett.7b02120] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The heterogeneous reaction of N2O5 with sea spray aerosols yields the ClNO2 molecule, which is postulated to occur through water-mediated charge separation into NO3- and NO2+ ions followed by association with Cl-. Here we address an alternative mechanism where the attack by a halide ion can yield XNO2 by direct insertion in the presence of water. This was accomplished by reacting X-(D2O)n (X = Cl, Br, I) cluster ions with N2O5 to produce ions with stoichiometry [XN2O5]-. These species were cooled in a 20 K ion trap and structurally characterized by vibrational spectroscopy using the D2 messenger tagging technique. Analysis of the resulting band patterns with DFT calculations indicates that they all correspond to exit channel ion-molecule complexes based on the association of NO3- with XNO2, with the NO3- constituent increasingly perturbed in the order I > Br > Cl. These results establish that XNO2 can be generated even when more exoergic reaction pathways involving hydrolysis are available and demonstrate the role of the intermediate [XN2O5]- in the formation of XNO2.
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Affiliation(s)
- Patrick J Kelleher
- Department of Chemistry, Yale University , New Haven, Connecticut 06525, United States
| | - Fabian S Menges
- Department of Chemistry, Yale University , New Haven, Connecticut 06525, United States
| | - Joseph W DePalma
- Department of Chemistry, Yale University , New Haven, Connecticut 06525, United States
| | - Joanna K Denton
- Department of Chemistry, Yale University , New Haven, Connecticut 06525, United States
| | - Mark A Johnson
- Department of Chemistry, Yale University , New Haven, Connecticut 06525, United States
| | - Gary H Weddle
- Department of Chemistry, Fairfield University , Fairfield, Connecticut 06824, United States
| | - Barak Hirshberg
- Institute of Chemistry and the Fritz-Haber Center for Molecular Dynamics, The Hebrew University , Jerusalem 9190401, Israel
- Department of Chemistry, University of California , Irvine, California 92697, United States
| | - R Benny Gerber
- Institute of Chemistry and the Fritz-Haber Center for Molecular Dynamics, The Hebrew University , Jerusalem 9190401, Israel
- Department of Chemistry, University of California , Irvine, California 92697, United States
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97
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Ahmadi M, Alves BXR, Baker CJ, Bertsche W, Butler E, Capra A, Carruth C, Cesar CL, Charlton M, Cohen S, Collister R, Eriksson S, Evans A, Evetts N, Fajans J, Friesen T, Fujiwara MC, Gill DR, Gutierrez A, Hangst JS, Hardy WN, Hayden ME, Isaac CA, Ishida A, Johnson MA, Jones SA, Jonsell S, Kurchaninov L, Madsen N, Mathers M, Maxwell D, McKenna JTK, Menary S, Michan JM, Momose T, Munich JJ, Nolan P, Olchanski K, Olin A, Pusa P, Rasmussen CØ, Robicheaux F, Sacramento RL, Sameed M, Sarid E, Silveira DM, Stracka S, Stutter G, So C, Tharp TD, Thompson JE, Thompson RI, van der Werf DP, Wurtele JS. Antihydrogen accumulation for fundamental symmetry tests. Nat Commun 2017; 8:681. [PMID: 28947794 PMCID: PMC5613003 DOI: 10.1038/s41467-017-00760-9] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Accepted: 07/20/2017] [Indexed: 11/18/2022] Open
Abstract
Antihydrogen, a positron bound to an antiproton, is the simplest anti-atom. Its structure and properties are expected to mirror those of the hydrogen atom. Prospects for precision comparisons of the two, as tests of fundamental symmetries, are driving a vibrant programme of research. In this regard, a limiting factor in most experiments is the availability of large numbers of cold ground state antihydrogen atoms. Here, we describe how an improved synthesis process results in a maximum rate of 10.5 ± 0.6 atoms trapped and detected per cycle, corresponding to more than an order of magnitude improvement over previous work. Additionally, we demonstrate how detailed control of electron, positron and antiproton plasmas enables repeated formation and trapping of antihydrogen atoms, with the simultaneous retention of atoms produced in previous cycles. We report a record of 54 detected annihilation events from a single release of the trapped anti-atoms accumulated from five consecutive cycles. Antihydrogen studies are important in testing the fundamental principles of physics but producing antihydrogen in large amounts is challenging. Here the authors demonstrate an efficient and high-precision method for trapping and stacking antihydrogen by using controlled plasma.
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Affiliation(s)
- M Ahmadi
- Department of Physics, University of Liverpool, Liverpool, L69 7ZE, UK
| | - B X R Alves
- Department of Physics and Astronomy, Aarhus University, DK-8000, Aarhus C, Denmark
| | - C J Baker
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK
| | - W Bertsche
- School of Physics and Astronomy, University of Manchester, Manchester, M12 9PL, UK.,Cockcroft Institute, Sci-Tech Daresbury, Warrington, WA4 4AD, UK
| | - E Butler
- Physics Department, CERN, CH-1211, Geneve 23, Switzerland
| | - A Capra
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3
| | - C Carruth
- Department of Physics, University of California at Berkeley, Berkeley, CA, 94720-7300, USA
| | - C L Cesar
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, 21941-972, Brazil
| | - M Charlton
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK
| | - S Cohen
- Department of Physics, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel
| | - R Collister
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3
| | - S Eriksson
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK
| | - A Evans
- Department of Physics and Astronomy, University of Calgary, Calgary, AB, Canada, T2N 1N4
| | - N Evetts
- Department of Physics and Astronomy, University of British Columbia, Vancouver, BC, Canada, V6T 1Z1
| | - J Fajans
- Department of Physics, University of California at Berkeley, Berkeley, CA, 94720-7300, USA
| | - T Friesen
- Department of Physics and Astronomy, Aarhus University, DK-8000, Aarhus C, Denmark.
| | - M C Fujiwara
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3
| | - D R Gill
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3
| | - A Gutierrez
- Department of Medical Physics and Biomedical Engineering, University College London, London, WC1E 6BT, UK
| | - J S Hangst
- Department of Physics and Astronomy, Aarhus University, DK-8000, Aarhus C, Denmark
| | - W N Hardy
- Department of Physics and Astronomy, University of British Columbia, Vancouver, BC, Canada, V6T 1Z1
| | - M E Hayden
- Department of Physics, Simon Fraser University, Burnaby, BC, Canada, V5A 1S6
| | - C A Isaac
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK
| | - A Ishida
- Department of Physics, The University of Tokyo, 7-3-1 Hongo, Tokyo, 113-0033, Japan
| | - M A Johnson
- School of Physics and Astronomy, University of Manchester, Manchester, M12 9PL, UK.,Cockcroft Institute, Sci-Tech Daresbury, Warrington, WA4 4AD, UK
| | - S A Jones
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK
| | - S Jonsell
- Department of Physics, Stockholm University, SE-10691, Stockholm, Sweden
| | - L Kurchaninov
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3
| | - N Madsen
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK.
| | - M Mathers
- Department of Physics and Astronomy, York University, Toronto, ON, Canada, M3J 1P3
| | - D Maxwell
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK
| | - J T K McKenna
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3
| | - S Menary
- Department of Physics and Astronomy, York University, Toronto, ON, Canada, M3J 1P3
| | - J M Michan
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3.,École Polytechnique Fédérale de Lausanne (EPFL), Swiss Plasma Center (SPC), CH-1015, Lausanne, Switzerland
| | - T Momose
- Department of Physics and Astronomy, University of British Columbia, Vancouver, BC, Canada, V6T 1Z1
| | - J J Munich
- Department of Physics, Simon Fraser University, Burnaby, BC, Canada, V5A 1S6
| | - P Nolan
- Department of Physics, University of Liverpool, Liverpool, L69 7ZE, UK
| | - K Olchanski
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3
| | - A Olin
- TRIUMF, 4004 Wesbrook Mall, Vancouver, BC, Canada, V6T 2A3.,Department of Physics and Astronomy, University of Victoria, Victoria, BC, Canada, V8P 5C2
| | - P Pusa
- Department of Physics, University of Liverpool, Liverpool, L69 7ZE, UK
| | - C Ø Rasmussen
- Department of Physics and Astronomy, Aarhus University, DK-8000, Aarhus C, Denmark
| | - F Robicheaux
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN, 47907, USA
| | - R L Sacramento
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, 21941-972, Brazil
| | - M Sameed
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK
| | - E Sarid
- Soreq NRC, Yavne, 81800, Israel
| | - D M Silveira
- Instituto de Fisica, Universidade Federal do Rio de Janeiro, Rio de Janeiro, 21941-972, Brazil
| | - S Stracka
- Universita di Pisa and Sezione INFN di Pisa, Largo Pontecorvo 3, 56127, Pisa, Italy
| | - G Stutter
- Department of Physics and Astronomy, Aarhus University, DK-8000, Aarhus C, Denmark
| | - C So
- Department of Physics and Astronomy, University of Calgary, Calgary, AB, Canada, T2N 1N4
| | - T D Tharp
- Physics Department, Marquette University, P.O. Box 1881, Milwaukee, WI, 53201-1881, USA
| | - J E Thompson
- Department of Physics and Astronomy, York University, Toronto, ON, Canada, M3J 1P3
| | - R I Thompson
- Department of Physics and Astronomy, University of Calgary, Calgary, AB, Canada, T2N 1N4
| | - D P van der Werf
- Department of Physics, College of Science, Swansea University, Swansea, SA2 8PP, UK.,IRFU, CEA/Saclay, F-91191, Gif-sur-Yvette, France
| | - J S Wurtele
- Department of Physics, University of California at Berkeley, Berkeley, CA, 94720-7300, USA
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98
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Duong CH, Gorlova O, Yang N, Kelleher PJ, Johnson MA, McCoy AB, Yu Q, Bowman JM. Disentangling the Complex Vibrational Spectrum of the Protonated Water Trimer, H +(H 2O) 3, with Two-Color IR-IR Photodissociation of the Bare Ion and Anharmonic VSCF/VCI Theory. J Phys Chem Lett 2017; 8:3782-3789. [PMID: 28737922 DOI: 10.1021/acs.jpclett.7b01599] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Vibrational spectroscopy of the protonated water trimer provides a stringent constraint on the details of the potential energy surface (PES) and vibrational dynamics governing excess proton motion far from equilibrium. Here we report the linear spectrum of the cold, bare H+(H2O)3 ion using a two-color, IR-IR photofragmentation technique and follow the evolution of the bands with increasing ion trap temperature. The key low-energy features are insensitive to both D2 tagging and internal energy. The D2-tagged D+(D2O)3 spectrum is reported for the first time, and the isotope dependence of the band pattern is surprisingly complex. These spectra are reproduced by large-scale vibrational configuration interaction calculations based on a new full-dimensional PES, which treat the anharmonic effects arising from large amplitude motion. The results indicate such extensive mode mixing in both isotopologues that one should be cautious about assigning even the strongest features to particular motions, especially for the absorptions that occur close to the intramolecular bending mode of the water molecule.
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Affiliation(s)
- Chinh H Duong
- Sterling Chemistry Laboratory, Yale University , New Haven, Connecticut 06520, United States
| | - Olga Gorlova
- Sterling Chemistry Laboratory, Yale University , New Haven, Connecticut 06520, United States
| | - Nan Yang
- Sterling Chemistry Laboratory, Yale University , New Haven, Connecticut 06520, United States
| | - Patrick J Kelleher
- Sterling Chemistry Laboratory, Yale University , New Haven, Connecticut 06520, United States
| | - Mark A Johnson
- Sterling Chemistry Laboratory, Yale University , New Haven, Connecticut 06520, United States
| | - Anne B McCoy
- Department of Chemistry, University of Washington , Seattle, Washington 98195, United States
| | - Qi Yu
- Department of Chemistry and Cherry L. Emerson Center for Computational Science, Emory University , Atlanta, Georgia 30322, United States
| | - Joel M Bowman
- Department of Chemistry and Cherry L. Emerson Center for Computational Science, Emory University , Atlanta, Georgia 30322, United States
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99
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Wolke CT, Fournier JA, Dzugan LC, Fagiani MR, Odbadrakh TT, Knorke H, Jordan KD, McCoy AB, Asmis KR, Johnson MA. Spectroscopic snapshots of the proton-transfer mechanism in water. Science 2017; 354:1131-1135. [PMID: 27934761 DOI: 10.1126/science.aaf8425] [Citation(s) in RCA: 169] [Impact Index Per Article: 24.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2016] [Revised: 08/11/2016] [Accepted: 09/29/2016] [Indexed: 01/20/2023]
Abstract
The Grotthuss mechanism explains the anomalously high proton mobility in water as a sequence of proton transfers along a hydrogen-bonded (H-bonded) network. However, the vibrational spectroscopic signatures of this process are masked by the diffuse nature of the key bands in bulk water. Here we report how the much simpler vibrational spectra of cold, composition-selected heavy water clusters, D+(D2O)n, can be exploited to capture clear markers that encode the collective reaction coordinate along the proton-transfer event. By complexing the solvated hydronium "Eigen" cluster [D3O+(D2O)3] with increasingly strong H-bond acceptor molecules (D2, N2, CO, and D2O), we are able to track the frequency of every O-D stretch vibration in the complex as the transferring hydron is incrementally pulled from the central hydronium to a neighboring water molecule.
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Affiliation(s)
- Conrad T Wolke
- Department of Chemistry, Yale University, New Haven, CT 06520, USA
| | - Joseph A Fournier
- Department of Chemistry, Yale University, New Haven, CT 06520, USA.,James Frank Institute and Department of Chemistry, University of Chicago, Chicago, IL 60637, USA
| | - Laura C Dzugan
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA
| | - Matias R Fagiani
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, 04103 Leipzig, Germany.,Fritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany
| | | | - Harald Knorke
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, 04103 Leipzig, Germany
| | - Kenneth D Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15620, USA.
| | - Anne B McCoy
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA. .,Department of Chemistry, University of Washington, Seattle, WA 98195, USA
| | - Knut R Asmis
- Wilhelm-Ostwald-Institut für Physikalische und Theoretische Chemie, Universität Leipzig, 04103 Leipzig, Germany.
| | - Mark A Johnson
- Department of Chemistry, Yale University, New Haven, CT 06520, USA.
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100
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Sacre P, Kerr MSD, Subramanian S, Kahn K, Gonzalez-Martinez J, Johnson MA, Sarma SV, Gale JT. The precuneus may encode irrationality in human gambling. Annu Int Conf IEEE Eng Med Biol Soc 2017; 2016:3406-3409. [PMID: 28324983 DOI: 10.1109/embc.2016.7591459] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Humans often make irrational decisions, especially psychiatric patients who have dysfunctional cognitive and emotional circuitry. Understanding the neural basis of decision-making is therefore essential towards patient management, yet current studies suffer from several limitations. Functional magnetic resonance imaging (fMRI) studies in humans have dominated decision-making neuroscience, but have poor temporal resolution and the blood oxygenation level-dependent signal is only a proxy for neural activity. On the other hand, lesion studies in humans used to infer functionality in decision-making lack characterization of neural activity altogether. Using a combination of local field potential recordings in human subjects performing a financial decision-making task, spectral analyses, and non-parametric cluster statistics, we analyzed the activity in the precuneus. In nine subjects, the neural activity modulated significantly between rational and irrational trials in the precuneus (p <; 0.001). In particular, high-frequency activity (70-100 Hz) increased when irrational decisions were made. Although preliminary, these results suggest suppression of gamma rhythms via electrical stimulation in the precuneus as a therapeutic intervention for pathological decision-making.
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