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Tralau-Stewart L, Roy R. Radiology-guided oesophageal stenting for the palliation of dysphagia: a single center experience. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz155.087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Cole R, Minto J, Flattery M, Parikh A, Dong T, Roy R, Bogar L, Morris A, Vega J, Gupta D, Bhatt K, Smith A, Laskar S, Lala A, Shah K, Shah P. Effects of Induction on the Risk of Post-Transplant De Novo DSA. J Heart Lung Transplant 2019. [DOI: 10.1016/j.healun.2019.01.986] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
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Dong T, Demoss B, Roy R, Smith A, Vega J, Laskar S, Bhatt K, Gupta D, Morris A, Cole R. Sensitization in LVAD Recipients with and without Transfusions. J Heart Lung Transplant 2019. [DOI: 10.1016/j.healun.2019.01.1155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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55
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Nieddu T, Ray T, Rajasree KS, Roy R, Chormaic SN. Simple, narrow, and robust atomic frequency reference at 993 nm exploiting the rubidium (Rb) 5S 1/2 to 6S 1/2 transition using one-color two-photon excitation. Opt Express 2019; 27:6528-6535. [PMID: 30876236 DOI: 10.1364/oe.27.006528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 02/05/2019] [Indexed: 06/09/2023]
Abstract
We experimentally demonstrate a one-color two-photon transition from the 5S1/2 ground state to the 6S1/2 excited state in rubidium (Rb) vapor using a continuous wave laser at 993 nm. The Rb vapor contains both isotopes (85Rb and 87Rb) in their natural abundances. The electric dipole-allowed transitions are characterized by varying the power and polarization of the excitation laser. Since the optical setup is relatively simple, and the energies of the allowed levels are impervious to stray magnetic fields, this is an attractive choice for a frequency reference at 993 nm, with possible applications in precision measurements and quantum information processing.
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Sun Myint A, Stewart A, Mills J, Sripadam R, Whitmarsh K, Roy R, Franklin A, Dhadda A. Treatment: the role of contact X-ray brachytherapy (Papillon) in the management of early rectal cancer. Colorectal Dis 2019; 21 Suppl 1:45-52. [PMID: 30809905 DOI: 10.1111/codi.14507] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/06/2018] [Accepted: 11/26/2018] [Indexed: 12/13/2022]
Affiliation(s)
- A Sun Myint
- Papillon Suite, Clatterbridge Cancer Centre, Bebington, Wirral, UK.,Translational Medicine Department, University of Liverpool, Liverpool, UK
| | - A Stewart
- St Luke's Cancer Centre, Royal Surrey County Hospital, Guildford, UK.,University of Surrey, Guildford, UK
| | - J Mills
- Nottingham University Hospital, Nottingham, UK
| | - R Sripadam
- Papillon Suite, Clatterbridge Cancer Centre, Bebington, Wirral, UK
| | - K Whitmarsh
- Papillon Suite, Clatterbridge Cancer Centre, Bebington, Wirral, UK
| | - R Roy
- Queen's Centre for Oncology and Haematology, Hull, UK
| | - A Franklin
- St Luke's Cancer Centre, Royal Surrey County Hospital, Guildford, UK
| | - A Dhadda
- Queen's Centre for Oncology and Haematology, Hull, UK
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Dilmanian FA, Krishnan S, McLaughlin WE, Lukaniec B, Baker JT, Ailawadi S, Hirsch KN, Cattell RF, Roy R, Helfer J, Kruger K, Spuhler K, He Y, Tailor R, Vassantachart A, Heaney DC, Zanzonico P, Gobbert MK, Graf JS, Nassimi JR, Fatemi NN, Schweitzer ME, Bangiyev L, Eley JG. Merging Orthovoltage X-Ray Minibeams spare the proximal tissues while producing a solid beam at the target. Sci Rep 2019; 9:1198. [PMID: 30718607 PMCID: PMC6362296 DOI: 10.1038/s41598-018-37733-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2017] [Accepted: 12/07/2018] [Indexed: 02/07/2023] Open
Abstract
Conventional radiation therapy of brain tumors often produces cognitive deficits, particularly in children. We investigated the potential efficacy of merging Orthovoltage X-ray Minibeams (OXM). It segments the beam into an array of parallel, thin (~0.3 mm), planar beams, called minibeams, which are known from synchrotron x-ray experiments to spare tissues. Furthermore, the slight divergence of the OXM array make the individual minibeams gradually broaden, thus merging with their neighbors at a given tissue depth to produce a solid beam. In this way the proximal tissues, including the cerebral cortex, can be spared. Here we present experimental results with radiochromic films to characterize the method's dosimetry. Furthermore, we present our Monte Carlo simulation results for physical absorbed dose, and a first-order biologic model to predict tissue tolerance. In particular, a 220-kVp orthovoltage beam provides a 5-fold sharper lateral penumbra than a 6-MV x-ray beam. The method can be implemented in arc-scan, which may include volumetric-modulated arc therapy (VMAT). Finally, OXM's low beam energy makes it ideal for tumor-dose enhancement with contrast agents such as iodine or gold nanoparticles, and its low cost, portability, and small room-shielding requirements make it ideal for use in the low-and-middle-income countries.
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Affiliation(s)
- F Avraham Dilmanian
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA.
- Department of Radiation Oncology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA.
- Department of Neurology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA.
- Department of Psychiatry, Stony Brook University Hospital, Stony Brook, NY, 11794, USA.
- Department of Biomedical Engineering, Stony Brook University Hospital, Stony Brook, NY, 11794, USA.
- Stony Brook Cancer Center, Stony Brook University Hospital, Stony Brook, NY, 11794, USA.
| | - Sunil Krishnan
- Department of Radiation Oncology, University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.
| | | | | | - Jameson T Baker
- Department of Radiation Oncology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
- Department of Radiation Medicine, Northwell Health Medical Center, Northwell, NY, USA
| | - Sandeep Ailawadi
- Department of Radiation Oncology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - Kara N Hirsch
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - Renee F Cattell
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
- Department of Biomedical Engineering, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - Rahul Roy
- Department of Radiation Oncology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - Joel Helfer
- Precision X-ray Inc., North Branford, CT, 06471, USA
| | - Kurt Kruger
- Precision X-ray Inc., North Branford, CT, 06471, USA
| | - Karl Spuhler
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - Yulun He
- Department of Radiation Oncology, University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
| | - Ramesh Tailor
- Department of Radiation Oncology, University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA
| | | | - Dakota C Heaney
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
- Department of Radiation Oncology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - Pat Zanzonico
- Memorial Sloan Kettering Cancer Center, New York, NY, USA
| | - Matthias K Gobbert
- Department of Mathematics and Statistics, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA
| | - Jonathan S Graf
- Department of Mathematics and Statistics, University of Maryland, Baltimore County, Baltimore, MD, 21250, USA
| | - Jessica R Nassimi
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - Nasrin N Fatemi
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
- Department of Radiology, City of Hope, Duarte, CA, 91010, USA
| | - Mark E Schweitzer
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - Lev Bangiyev
- Department of Radiology, Stony Brook University Hospital, Stony Brook, NY, 11794, USA
| | - John G Eley
- Department of Radiation Oncology, University of Maryland School of Medicine, Baltimore, MD, 21201, USA
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Solhaug EM, Roy R, Chatt EC, Klinkenberg PM, Mohd‐Fadzil N, Hampton M, Nikolau BJ, Carter CJ. An integrated transcriptomics and metabolomics analysis of the Cucurbita pepo nectary implicates key modules of primary metabolism involved in nectar synthesis and secretion. Plant Direct 2019; 3:e00120. [PMID: 31245763 PMCID: PMC6508809 DOI: 10.1002/pld3.120] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2018] [Revised: 01/27/2019] [Accepted: 02/11/2019] [Indexed: 05/24/2023]
Abstract
Nectar is the main reward that flowers offer to pollinators to entice repeated visitation. Cucurbita pepo (squash) is an excellent model for studying nectar biology, as it has large nectaries that produce large volumes of nectar relative to most other species. Squash is also monoecious, having both female and male flowers on the same plant, which allows comparative analyses of nectary function in one individual. Here, we report the nectary transcriptomes from both female and male nectaries at four stages of floral maturation. Analysis of these transcriptomes and subsequent confirmatory experiments revealed a metabolic progression in nectaries leading from starch synthesis to starch degradation and to sucrose biosynthesis. These results are consistent with previously published models of nectar secretion and also suggest how a sucrose-rich nectar can be synthesized and secreted in the absence of active transport across the plasma membrane. Nontargeted metabolomic analyses of nectars also confidently identified 40 metabolites in both female and male nectars, with some displaying preferential accumulation in nectar of either male or female flowers. Cumulatively, this study identified gene targets for reverse genetics approaches to study nectary function, as well as previously unreported nectar metabolites that may function in plant-biotic interactions.
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Affiliation(s)
- Erik M. Solhaug
- Department of Plant & Microbial BiologyUniversity of MinnesotaSt. PaulMinnesota
| | - Rahul Roy
- Department of Plant & Microbial BiologyUniversity of MinnesotaSt. PaulMinnesota
| | - Elizabeth C. Chatt
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular BiologyCenter for Metabolic BiologyIowa State UniversityAmesIowa
| | | | - Nur‐Aziatull Mohd‐Fadzil
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular BiologyCenter for Metabolic BiologyIowa State UniversityAmesIowa
| | - Marshall Hampton
- Department of Mathematics & StatisticsUniversity of Minnesota DuluthDuluthMinnesota
| | - Basil J. Nikolau
- Roy J. Carver Department of Biochemistry, Biophysics & Molecular BiologyCenter for Metabolic BiologyIowa State UniversityAmesIowa
| | - Clay J. Carter
- Department of Plant & Microbial BiologyUniversity of MinnesotaSt. PaulMinnesota
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Umrao S, S A, Jain V, Chakraborty B, Roy R. Smartphone-based kanamycin sensing with ratiometric FRET. RSC Adv 2019; 9:6143-6151. [PMID: 35517283 PMCID: PMC9060919 DOI: 10.1039/c8ra10035g] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 02/12/2019] [Indexed: 11/21/2022] Open
Abstract
FRET aptamer based kanamycin detection enables reusable and smartphone sensing.
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Affiliation(s)
- Saurabh Umrao
- Department of Chemical Engineering
- Indian Institute of Science
- Bangalore
- India
| | - Anusha S
- Department of Chemical Engineering
- Indian Institute of Science
- Bangalore
- India
| | - Vasundhara Jain
- Department of Chemical Engineering
- Indian Institute of Science
- Bangalore
- India
| | - Banani Chakraborty
- Department of Chemical Engineering
- Indian Institute of Science
- Bangalore
- India
| | - Rahul Roy
- Department of Chemical Engineering
- Indian Institute of Science
- Bangalore
- India
- Molecular Biophysics Unit
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Kar M, Nisheetha A, Kumar A, Jagtap S, Shinde J, Singla M, M S, Pandit A, Chandele A, Kabra SK, Krishna S, Roy R, Lodha R, Pattabiraman C, Medigeshi GR. Isolation and molecular characterization of dengue virus clinical isolates from pediatric patients in New Delhi. Int J Infect Dis 2018; 84S:S25-S33. [PMID: 30528666 DOI: 10.1016/j.ijid.2018.12.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Revised: 12/01/2018] [Accepted: 12/04/2018] [Indexed: 01/26/2023] Open
Abstract
OBJECTIVE To characterize the in vitro replication fitness, viral diversity, and phylogeny of dengue viruses (DENV) isolated from Indian patients. METHODS DENV was isolated from whole blood collected from patients by passaging in cell culture. Passage 3 viruses were used for growth kinetics in C6/36 mosquito cells. Parallel efforts also focused on the isolation of DENV RNA from plasma samples of the same patients, which were processed for next-generation sequencing. RESULTS It was possible to isolate 64 clinical isolates of DENV, mostly DENV-2. Twenty-five of these were further used for growth curve analysis in vitro, which showed a wide range of replication kinetics. The highest viral titers were associated with isolates from patients with dengue with warning signs and severe dengue cases. Full genome sequences of 21 DENV isolates were obtained. Genome analysis mapped the circulating DENV-2 strains to the Cosmopolitan genotype. CONCLUSIONS The replication kinetics of isolates from patients with mild or severe infection did not differ significantly, but the viral titers varied by two orders of magnitude between the isolates, suggesting differences in replication fitness among the circulating DENV-2.
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Affiliation(s)
- Meenakshi Kar
- Translational Health Science and Technology Institute, Faridabad, Haryana, India
| | - Amul Nisheetha
- National Centre for Biological Sciences, TIFR, Bengaluru, India
| | - Anuj Kumar
- National Centre for Biological Sciences, TIFR, Bengaluru, India
| | - Suraj Jagtap
- Department of Chemical Engineering, Indian Institute of Science, Bengaluru, India
| | - Jitendra Shinde
- Translational Health Science and Technology Institute, Faridabad, Haryana, India
| | - Mohit Singla
- Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India
| | - Saranya M
- Molecular Biophysics Unit, Indian Institute of Science, Bengaluru, India
| | - Awadhesh Pandit
- National Centre for Biological Sciences, TIFR, Bengaluru, India
| | - Anmol Chandele
- ICGEB-Emory Vaccine Center, ICGEB Campus, New Delhi, India
| | - Sushil K Kabra
- Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India
| | - Sudhir Krishna
- National Centre for Biological Sciences, TIFR, Bengaluru, India
| | - Rahul Roy
- Department of Chemical Engineering, Indian Institute of Science, Bengaluru, India; Molecular Biophysics Unit, Indian Institute of Science, Bengaluru, India; Center for Biosystems Science and Engineering, Indian Institute of Science, Bengaluru, India
| | - Rakesh Lodha
- Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, India
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Garcia-Rodriguez A, de la Casa M, Gosálvez J, Roy R. CAT-262CT Genotype shows higher catalase activity in seminal plasma and lower risk of male infertility. Meta Gene 2018. [DOI: 10.1016/j.mgene.2018.07.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022] Open
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Hung T, Gezari S, Cenko SB, van Velzen S, Blagorodnova N, Yan L, Kulkarni SR, Lunnan R, Kupfer T, Leloudas G, Kong AKH, Nugent PE, Fremling C, Laher RR, Masci FJ, Cao Y, Roy R, Petrushevska T. SIFTING FOR SAPPHIRES: SYSTEMATIC SELECTION OF TIDAL DISRUPTION EVENTS IN iPTF. Astrophys J Suppl Ser 2018; 238:15. [PMID: 31160831 PMCID: PMC6544052 DOI: 10.3847/1538-4365/aad8b1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
We present results from a systematic selection of tidal disruption events (TDEs) in a wide-area (4800 deg2), g + R band, Intermediate Palomar Transient Factory (iPTF) experiment. Our selection targets typical optically-selected TDEs: bright (>60% flux increase) and blue transients residing in the center of red galaxies. Using photometric selection criteria to down-select from a total of 493 nuclear transients to a sample of 26 sources, we then use follow-up UV imaging with the Neil Gehrels Swift Telescope, ground-based optical spectroscopy, and light curve fitting to classify them as 14 Type Ia supernovae (SNe Ia), 9 highly variable active galactic nuclei (AGNs), 2 confirmed TDEs, and 1 potential core-collapse supernova. We find it possible to filter AGNs by employing a more stringent transient color cut (g - r < -0.2 mag); further, UV imaging is the best discriminator for filtering SNe, since SNe Ia can appear as blue, optically, as TDEs in their early phases. However, when UV-optical color is unavailable, higher precision astrometry can also effectively reduce SNe contamination in the optical. Our most stringent optical photometric selection criteria yields a 4.5:1 contamination rate, allowing for a manageable number of TDE candidates for complete spectroscopic follow-up and real-time classification in the ZTF era. We measure a TDE per galaxy rate of 1.7 - 1.3 + 2.9 × 10 - 4 gal - 1 yr - 1 (90% CL in Poisson statistics). This does not account for TDEs outside our selection criteria, thus may not reflect the total TDE population, which is yet to be fully mapped.
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Affiliation(s)
- T Hung
- Department of Astronomy, University of Maryland, College Park, MD 20742, USA
| | - S Gezari
- Department of Astronomy, University of Maryland, College Park, MD 20742, USA
- Joint Space-Science Institute, University of Maryland, College Park, MD 20742, USA
| | - S B Cenko
- Joint Space-Science Institute, University of Maryland, College Park, MD 20742, USA
- NASA Goddard Space Flight Center, Mail Code 661, Greenbelt, MD 20771, USA
| | - S van Velzen
- Joint Space-Science Institute, University of Maryland, College Park, MD 20742, USA
- Department of Physics, New York University, NY 10003, USA
| | - N Blagorodnova
- Department of Astronomy, California Institute of Technology, Pasadena, CA 91125, USA
| | - Lin Yan
- Caltech Optical Observatories, Cahill Center for Astronomy and Astrophysics, California Institute of Technology, Pasadena, CA 91125, USA
- Infrared Processing and Analysis Center, California Institute of Technology, Pasadena, CA 91125, USA
| | - S R Kulkarni
- Department of Astronomy, California Institute of Technology, Pasadena, CA 91125, USA
| | - R Lunnan
- The Oskar Klein Centre & Department of Astronomy, Stockholm University, AlbaNova, SE-106 91 Stockholm, Sweden
| | - T Kupfer
- Department of Astronomy, California Institute of Technology, Pasadena, CA 91125, USA
| | - G Leloudas
- Dark Cosmology Centre, Niels Bohr Institute, University of Copenhagen, Juliane Maries vej 30, 2100 Copenhagen, Denmark
| | - A K H Kong
- Institute of Astronomy, National Tsing Hua University, No. 101, Section 2, Kuang-Fu Road, Hsinchu, 30013, Taiwan
| | - P E Nugent
- Department of Astronomy, University of California, Berkeley, CA 94720-3411, USA
- Lawrence Berkeley National Laboratory, 1 Cyclotron Road, MS 50B-4206, Berkeley, CA 94720, USA
| | - C Fremling
- Department of Astronomy, California Institute of Technology, Pasadena, CA 91125, USA
| | - Russ R Laher
- Infrared Processing and Analysis Center, California Institute of Technology, Pasadena, CA 91125, USA
| | - F J Masci
- Infrared Processing and Analysis Center, California Institute of Technology, Pasadena, CA 91125, USA
| | - Y Cao
- Department of Astronomy, University of Washington, Box 351580, U.W., Seattle, WA 98195-1580, USA
- eScience Institute, University of Washington, Box 351570, U.W., Seattle, WA 98195-1580, USA
| | - R Roy
- The Oskar Klein Centre & Department of Astronomy, Stockholm University, AlbaNova, SE-106 91 Stockholm, Sweden
| | - T Petrushevska
- Oskar Klein Centre, Department of Physics, Stockholm University, SE 106 91 Stockholm, Sweden
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Schmitt AJ, Roy R, Klinkenberg PM, Jia M, Carter CJ. The Octadecanoid Pathway, but Not COI1, Is Required for Nectar Secretion in Arabidopsis thaliana. Front Plant Sci 2018; 9:1060. [PMID: 30135692 PMCID: PMC6092685 DOI: 10.3389/fpls.2018.01060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Accepted: 06/29/2018] [Indexed: 05/08/2023]
Abstract
Over 75% of crop species produce nectar and are dependent on pollinators to achieve maximum seed set, yet little is known about the mechanisms regulating nectar secretion. The phytohormone jasmonic acid (JA) is recognized to be involved in several plant processes including development and defense. JA was also recently shown to positively influence nectar secretion in both floral and extrafloral nectaries. For example, endogenous JA levels peak in flowers just prior to nectar secretion, but the details of how JA regulates nectar secretion have yet to be elucidated. We have found that the octadecanoid pathway does indeed play a role in the production and regulation of floral nectar in Arabidopsis. Null alleles for several JA biosynthesis and response genes had significantly reduced amounts of nectar, as well as altered expression of genes known to be involved in nectar production. We additionally identified crosstalk between the JA and auxin response pathways in nectaries. For example, the nectar-less JA synthesis mutant aos-2 showed no auxin response in nectaries, but both nectar production and the auxin response were restored upon exogenous JA and auxin treatment. Conversely, coi1-1, a JA-Ile-insensitive receptor mutant, displayed no auxin response in nectaries under any circumstance, even in older flowers that produced nectar. Surprisingly, opr3-1, a mutant for 12-oxophytodienoate reductase 3 [an enzyme further down the JA biosynthetic pathway that reduces 12-oxo phytodienoic acid (OPDA)], produced no nectar in newly opened flowers, but did secrete nectar in older flowers. Furthermore, a similar phenotype was observed in coi1-1. Cumulatively, these observations strongly suggest an indispensable role for an octadecanoic acid- and auxin-dependent, but JA- and COI1-dispensible, pathway in regulating nectar production in Arabidopsis.
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Affiliation(s)
| | | | | | | | - Clay J. Carter
- Department of Plant and Microbial Biology, University of Minnesota Twin Cities, St. Paul, MN, United States
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Goja S, Yadav SK, Roy R, Soin AS. A retrospective comparative study of venous vs nonringed expanded polytetrafluoroethylene extension grafts for anterior sector outflow reconstruction in right lobe living donor liver transplantation. Clin Transplant 2018; 32:e13344. [DOI: 10.1111/ctr.13344] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Revised: 06/04/2018] [Accepted: 07/04/2018] [Indexed: 12/13/2022]
Affiliation(s)
- Sanjay Goja
- Institute of Liver Transplantation and Regenerative Medicine; Medanta - The Medicity; Gurgaon, Delhi (NCR) India
| | - Sanjay K. Yadav
- Institute of Liver Transplantation and Regenerative Medicine; Medanta - The Medicity; Gurgaon, Delhi (NCR) India
| | - Rahul Roy
- Institute of Liver Transplantation and Regenerative Medicine; Medanta - The Medicity; Gurgaon, Delhi (NCR) India
| | - Arvinder S. Soin
- Institute of Liver Transplantation and Regenerative Medicine; Medanta - The Medicity; Gurgaon, Delhi (NCR) India
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Banerjee S, Maurya S, Roy R. Single-molecule fluorescence imaging: Generating insights into molecular interactions in virology. J Biosci 2018; 43:519-540. [PMID: 30002270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Single-molecule fluorescence methods remain a challenging yet information-rich set of techniques that allow one to probe the dynamics, stoichiometry and conformation of biomolecules one molecule at a time. Viruses are small (nanometers) in size, can achieve cellular infections with a small number of virions and their lifecycle is inherently heterogeneous with a large number of structural and functional intermediates. Single-molecule measurements that reveal the complete distribution of properties rather than the average can hence reveal new insights into virus infections and biology that are inaccessible otherwise. This article highlights some of the methods and recent applications of single-molecule fluorescence in the field of virology. Here, we have focused on new findings in virus-cell interaction, virus cell entry and transport, viral membrane fusion, genome release, replication, translation, assembly, genome packaging, egress and interaction with host immune proteins that underline the advantage of single-molecule approach to the question at hand. Finally, we discuss the challenges, outlook and potential areas for improvement and future use of single-molecule fluorescence that could further aid our understanding of viruses.
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Affiliation(s)
- Sunaina Banerjee
- Molecular Biophysics Unit, Indian Institute of Science, Bengaluru, India
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Baral S, Roy R, Dixit NM. Modeling how reversal of immune exhaustion elicits cure of chronic hepatitis C after the end of treatment with direct-acting antiviral agents. Immunol Cell Biol 2018; 96:969-980. [PMID: 29744934 PMCID: PMC6220890 DOI: 10.1111/imcb.12161] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2018] [Revised: 04/26/2018] [Accepted: 04/30/2018] [Indexed: 12/11/2022]
Abstract
A fraction of chronic hepatitis C patients treated with direct‐acting antivirals (DAAs) achieved sustained virological responses (SVR), or cure, despite having detectable viremia at the end of treatment (EOT). This observation, termed EOT+/SVR, remains puzzling and precludes rational optimization of treatment durations. One hypothesis to explain EOT+/SVR, the immunologic hypothesis, argues that the viral decline induced by DAAs during treatment reverses the exhaustion of cytotoxic T lymphocytes (CTLs), which then clear the infection after treatment. Whether the hypothesis is consistent with data of viral load changes in patients who experienced EOT+/SVR is unknown. Here, we constructed a mathematical model of viral kinetics incorporating the immunologic hypothesis and compared its predictions with patient data. We found the predictions to be in quantitative agreement with patient data. Using the model, we unraveled an underlying bistability that gives rise to EOT+/SVR and presents a new avenue to optimize treatment durations. Infected cells trigger both activation and exhaustion of CTLs. CTLs in turn kill infected cells. Due to these competing interactions, two stable steady states, chronic infection and viral clearance, emerge, separated by an unstable steady state with intermediate viremia. When treatment during chronic infection drives viremia sufficiently below the unstable state, spontaneous viral clearance results post‐treatment, marking EOT+/SVR. The duration to achieve this desired reduction in viremia defines the minimum treatment duration required for ensuring SVR, which our model can quantify. Estimating parameters defining the CTL response of individuals to HCV infection would enable the application of our model to personalize treatment durations.
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Affiliation(s)
- Subhasish Baral
- Department of Chemical Engineering, Indian Institute of Science, Bangalore, Karnataka, India
| | - Rahul Roy
- Department of Chemical Engineering, Indian Institute of Science, Bangalore, Karnataka, India.,Centre for Biosystems Science and Engineering, Indian Institute of Science, Bangalore, Karnataka, India.,Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka, India
| | - Narendra M Dixit
- Department of Chemical Engineering, Indian Institute of Science, Bangalore, Karnataka, India.,Centre for Biosystems Science and Engineering, Indian Institute of Science, Bangalore, Karnataka, India
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Coen O, Karsera L, Tambe N, Roy R. A single centre experience of in-field recurrence following pre-operative radio(chemo)therapy in patients with rectal cancer. Ann Oncol 2018. [DOI: 10.1093/annonc/mdy151.316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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69
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Koh HR, Roy R, Sorokina M, Tang GQ, Nandakumar D, Patel SS, Ha T. Correlating Transcription Initiation and Conformational Changes by a Single-Subunit RNA Polymerase with Near Base-Pair Resolution. Mol Cell 2018; 70:695-706.e5. [PMID: 29775583 PMCID: PMC5983381 DOI: 10.1016/j.molcel.2018.04.018] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Revised: 02/23/2018] [Accepted: 04/19/2018] [Indexed: 11/20/2022]
Abstract
We provide a comprehensive analysis of transcription in real time by T7 RNA Polymerase (RNAP) using single-molecule fluorescence resonance energy transfer by monitoring the entire life history of transcription initiation, including stepwise RNA synthesis with near base-pair resolution, abortive cycling, and transition into elongation. Kinetically branching pathways were observed for abortive initiation with an RNAP either recycling on the same promoter or exchanging with another RNAP from solution. We detected fast and slow populations of RNAP in their transition into elongation, consistent with the efficient and delayed promoter release, respectively, observed in ensemble studies. Real-time monitoring of abortive cycling using three-probe analysis showed that the initiation events are stochastically branched into productive and failed transcription. The abortive products are generated primarily from initiation events that fail to progress to elongation, and a majority of the productive events transit to elongation without making abortive products.
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Affiliation(s)
- Hye Ran Koh
- Department of Physics and Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Department of Chemistry, Chung-Ang University, Seoul 06974, Korea
| | - Rahul Roy
- Department of Physics and Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Maria Sorokina
- Department of Physics and Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Guo-Qing Tang
- Department of Biochemistry and Molecular Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA
| | - Divya Nandakumar
- Department of Biochemistry and Molecular Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA
| | - Smita S Patel
- Department of Biochemistry and Molecular Biology, Rutgers University, Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA.
| | - Taekjip Ha
- Department of Physics and Center for the Physics of Living Cells, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Howard Hughes Medical Institute, Baltimore, MD 21205, USA; Departments of Biophysics and Biophysical Chemistry, Biophysics, and Biomedical Engineering, Johns Hopkins University, MD 21205, USA.
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García-Rodríguez A, de la Casa M, Peinado H, Gosálvez J, Roy R. Human prostasomes from normozoospermic and non-normozoospermic men show a differential protein expression pattern. Andrology 2018; 6:585-596. [DOI: 10.1111/andr.12496] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Revised: 03/20/2018] [Accepted: 03/28/2018] [Indexed: 12/11/2022]
Affiliation(s)
| | | | - H. Peinado
- Microenvironment and Metastasis Group; Molecular Oncology Program; Spanish National Cancer Research Centre (CNIO); Madrid Spain
| | - J. Gosálvez
- Biology Department; University Autónoma of Madrid; Madrid Spain
| | - R. Roy
- Biology Department; University Autónoma of Madrid; Madrid Spain
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Sathyanarayana P, Maurya S, Ravichandran M, Ayappa GK, Visweswariah SS, Roy R. Cholesterol Promotes Cytolysin a Activity by Stabilizing the Intermediates during Pore Formation. Biophys J 2018. [DOI: 10.1016/j.bpj.2017.11.3687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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72
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Muhsen W, Roy R. A comparative study of HHHFNC and NCPAP in preventing reintubation in extreme preterm infants born at less than 30-week gestation. J Matern Fetal Neonatal Med 2018; 31:3197-3200. [DOI: 10.1080/14767058.2017.1366980] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Wisam Muhsen
- Neonatal Medicine Department, Rosie Hospital, Cambridge University Hospitals, Cambridge, England
| | - Rahul Roy
- Neonatal Medicine Department, Norfolk and Norwich University Hospital, Norwich, England
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Roy R, Schmitt AJ, Thomas JB, Carter CJ. Review: Nectar biology: From molecules to ecosystems. Plant Sci 2017; 262:148-164. [PMID: 28716410 DOI: 10.1016/j.plantsci.2017.04.012] [Citation(s) in RCA: 98] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 04/17/2017] [Accepted: 04/19/2017] [Indexed: 05/06/2023]
Abstract
Plants attract mutualistic animals by offering a reward of nectar. Specifically, floral nectar (FN) is produced to attract pollinators, whereas extrafloral nectar (EFN) mediates indirect defenses through the attraction of mutualist predatory insects to limit herbivory. Nearly 90% of all plant species, including 75% of domesticated crops, benefit from animal-mediated pollination, which is largely facilitated by FN. Moreover, EFN represents one of the few defense mechanisms for which stable effects on plant health and fitness have been demonstrated in multiple systems, and thus plays a crucial role in the resistance phenotype of plants producing it. In spite of its central role in plant-animal interactions, the molecular events involved in the development of both floral and extrafloral nectaries (the glands that produce nectar), as well as the synthesis and secretion of the nectar itself, have been poorly understood until recently. This review will cover major recent developments in the understanding of (1) nectar chemistry and its role in plant-mutualist interactions, (2) the structure and development of nectaries, (3) nectar production, and (4) its regulation by phytohormones.
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Affiliation(s)
- Rahul Roy
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA
| | - Anthony J Schmitt
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA
| | - Jason B Thomas
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA
| | - Clay J Carter
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, MN 55108, USA.
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Affiliation(s)
- R. Roy
- Ecole Polytechnique de Montréal, C.P. 6079, Succursale A, Montréal, Québec H3C 3A7, Canada
| | - A. Hébert
- Ecole Polytechnique de Montréal, C.P. 6079, Succursale A, Montréal, Québec H3C 3A7, Canada
| | - G. Marleau
- Ecole Polytechnique de Montréal, C.P. 6079, Succursale A, Montréal, Québec H3C 3A7, Canada
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Affiliation(s)
- N. H. Macmillan
- The Pennsylvania State University, Materials Research Laboratory, University Park, Pennsylvania 16802
| | - R. Roy
- The Pennsylvania State University, Materials Research Laboratory, University Park, Pennsylvania 16802
| | - P. T. B. Shaffer
- The Carborundum Company, Engineered Systems Group, P.O. Box 414, Niagara Falls, New York 14302
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Affiliation(s)
- R. Roy
- Institut de Génie Énergétique, École Polytechnique de Montréal Montréal, Québec, Canada H3C 3A 7
| | - A. Hébert
- Institut de Génie Énergétique, École Polytechnique de Montréal Montréal, Québec, Canada H3C 3A 7
| | - G. Marleau
- Institut de Génie Énergétique, École Polytechnique de Montréal Montréal, Québec, Canada H3C 3A 7
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Affiliation(s)
- G. Marleau
- Ecole Polytechnique de Montréal, Institut de Génie Energétique Montreal, Québec, Canada H3C 3A 7
| | - R. Roy
- Ecole Polytechnique de Montréal, Institut de Génie Energétique Montreal, Québec, Canada H3C 3A 7
| | - A. Hébert
- Ecole Polytechnique de Montréal, Institut de Génie Energétique Montreal, Québec, Canada H3C 3A 7
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Roy R, Bassham DC. TNO1, a TGN-localized SNARE-interacting protein, modulates root skewing in Arabidopsis thaliana. BMC Plant Biol 2017; 17:73. [PMID: 28399805 PMCID: PMC5387210 DOI: 10.1186/s12870-017-1024-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2016] [Accepted: 04/05/2017] [Indexed: 05/23/2023]
Abstract
BACKGROUND The movement of plant roots within the soil is key to their ability to interact with the environment and maximize anchorage and nutrient acquisition. Directional growth of roots occurs by a combination of sensing external cues, hormonal signaling and cytoskeletal changes in the root cells. Roots growing on slanted, impenetrable growth medium display a characteristic waving and skewing, and mutants with deviations in these phenotypes assist in identifying genes required for root movement. Our study identifies a role for a trans-Golgi network-localized protein in root skewing. RESULTS We found that Arabidopsis thaliana TNO1 (TGN-localized SYP41-interacting protein), a putative tethering factor localized at the trans-Golgi network, affects root skewing. tno1 knockout mutants display enhanced root skewing and epidermal cell file rotation. Skewing of tno1 roots increases upon microtubule stabilization, but is insensitive to microtubule destabilization. Microtubule destabilization leads to severe defects in cell morphology in tno1 seedlings. Microtubule array orientation is unaffected in the mutant roots, suggesting that the increase in cell file rotation is independent of the orientation of microtubule arrays. CONCLUSIONS We conclude that TNO1 modulates root skewing in a mechanism that is dependent on microtubules but is not linked to disruption of the orientation of microtubule arrays. In addition, TNO1 is required for maintenance of cell morphology in mature regions of roots and the base of hypocotyls. The TGN-localized SNARE machinery might therefore be important for appropriate epidermal cell file rotation and cell expansion during root growth.
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Affiliation(s)
- Rahul Roy
- Department of Genetics, Development and Cell Biology, 1035B Roy J Carver Co-Lab, 1111 WOI Rd, Iowa State University, Ames, IA 50011 USA
- Interdepartmental Genetics Program, Iowa State University, Ames, IA USA
- Current Address: Department of Plant and Microbial Biology, University of Minnesota, Twin Cities, MN 55108 USA
| | - Diane C. Bassham
- Department of Genetics, Development and Cell Biology, 1035B Roy J Carver Co-Lab, 1111 WOI Rd, Iowa State University, Ames, IA 50011 USA
- Interdepartmental Genetics Program, Iowa State University, Ames, IA USA
- Plant Sciences Institute, Iowa State University, Ames, IA USA
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Abstract
Periodically driven noninteracting systems may exhibit anomalous chiral edge modes, despite hosting bands with trivial topology. We find that these drives have surprising many-body analogs, corresponding to class A, which exhibit anomalous charge and information transport at the boundary. Drives of this form are applicable to generic systems of bosons, fermions, and spins, and may be characterized by the anomalous unitary operator that acts at the edge of an open system. We find that these operators are robust to all local perturbations and may be classified by a pair of coprime integers. This defines a notion of dynamical topological order that may be applied to general time-dependent systems, including many-body localized phases or time crystals.
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Affiliation(s)
- Fenner Harper
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
| | - Rahul Roy
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095, USA
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Crosby T, Hurt CN, Falk S, Gollins S, Staffurth J, Ray R, Bridgewater JA, Geh JI, Cunningham D, Blazeby J, Roy R, Maughan T, Griffiths G, Mukherjee S. Long-term results and recurrence patterns from SCOPE-1: a phase II/III randomised trial of definitive chemoradiotherapy +/- cetuximab in oesophageal cancer. Br J Cancer 2017; 116:709-716. [PMID: 28196063 PMCID: PMC5355926 DOI: 10.1038/bjc.2017.21] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2016] [Revised: 01/03/2017] [Accepted: 01/16/2017] [Indexed: 12/13/2022] Open
Abstract
BACKGROUND The SCOPE-1 study tested the role of adding cetuximab to conventional definitive chemoradiotherapy (dCRT), and demonstrated greater toxicity and worse survival outcomes. We present the long-term outcomes and patterns of recurrence. METHODS SCOPE-1 was a phase II/III trial in which patients were randomised to cisplatin 60 mg m-2 (day 1) and capecitabine 625 mg m-2 bd (days 1-21) for four cycles +/- cetuximab 400 mg m-2 day 1 then by 250 mg m-2 weekly. Radiotherapy consisted of 50 Gy/25# given concurrently with cycles 3 and 4. Recruitment was between February 2008 and February 2012, when the IDMC recommended closure on the basis of futility. RESULTS About 258 patients (dCRT=129; dCRT+cetuximab (dCRT+C)=129) were recruited from 36 centres. About 72.9% (n=188) had squamous cell histology. The median follow-up (IQR) was 46.2 (35.9-48.3) months for surviving patients. The median overall survival (OS; months; 95% CI) was 34.5 (24.7-42.3) in dCRT and 24.7 (18.6-31.3) in dCRT+C (hazard ratio (HR)=1.25, 95% CIs: 0.93-1.69, P=0.137). Median progression-free survival (PFS; months; 95% CI) was 24.1 (15.3-29.9) and 15.9 (10.7-20.8) months, respectively (HR=1.28, 95% CIs: 0.94-1.75; P=0.114). On multivariable analysis only earlier stage, full-dose RT, and higher cisplatin dose intensity were associated with improved OS. CONCLUSIONS The mature analysis demonstrates that the dCRT regimen used in the study provided useful survival outcomes despite its use in patients who were largely unfit for surgery or who had inoperable disease. Given the competing risk of systemic and local failure, future studies should continue to focus on enhancing local control as well as optimising systemic therapy.
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Affiliation(s)
- T Crosby
- Velindre Cancer Centre, Velindre Hospital, Cardiff CF14 2TL, UK
| | - C N Hurt
- Wales Cancer Trials Unit, Cardiff University, Cardiff CF14 4YS, UK
| | - S Falk
- Bristol Haematology and Oncology Centre, University Hospitals Bristol NHS Foundation Trust, Bristol BS2 8ED, UK
| | - S Gollins
- North Wales Cancer Treatment Centre, Conwy and Denbighshire NHS Trust, Rhyl LL18 5UJ, UK
| | - J Staffurth
- Velindre Cancer Centre, Velindre Hospital, Cardiff CF14 2TL, UK
| | - R Ray
- Wales Cancer Trials Unit, Cardiff University, Cardiff CF14 4YS, UK
| | - J A Bridgewater
- UCL Cancer Institute, University College London, London WC1E 6BT, UK
| | - J I Geh
- Queen Elizabeth Hospital, University Hospitals Birmingham NHS Foundation Trust Birmingham B15 2GW, UK
| | - D Cunningham
- The Royal Marsden Hospital NHS Foundation Trust, London SM2 5PT, UK
| | - J Blazeby
- Centre for Surgical Research, University of Bristol, Bristol BS8 2PS, UK
| | - R Roy
- Diana Princess of Wales Hospital, Northern Lincolnshire and Goole NHS Foundation Trust, Grimsby DN33 2BA, UK
| | - T Maughan
- CRUK/MRC Oxford Institute for Radiation Oncology, University of Oxford, Oxford OX3 7DQ, UK
| | - G Griffiths
- Southampton Clinical Trials Unit, University of Southampton, Southampton SO16 6YD, UK
| | - S Mukherjee
- CRUK/MRC Oxford Institute for Radiation Oncology, University of Oxford, Oxford OX3 7DQ, UK
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Hall PS, Lord SR, Collinson M, Marshall H, Jones M, Lowe C, Howard H, Swinson D, Velikova G, Anthoney A, Roy R, Dent J, Cheeseman S, Last K, Seymour MT. A randomised phase II trial and feasibility study of palliative chemotherapy in frail or elderly patients with advanced gastroesophageal cancer (321GO). Br J Cancer 2017; 116:472-478. [PMID: 28095397 PMCID: PMC5318975 DOI: 10.1038/bjc.2016.442] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2016] [Revised: 11/08/2016] [Accepted: 12/05/2016] [Indexed: 01/19/2023] Open
Abstract
BACKGROUND Elderly patients are commonly under-represented in cancer clinical trials. The 321GO was undertaken in preparation for a definitive phase three trial assessing different chemotherapy regimens in a frail and/or elderly population with advanced gastroesophageal (GO) cancer. METHODS Patients with advanced GO cancer considered unfit for conventional dose chemotherapy were randomly assigned in a 1 : 1 : 1 ratio to: epirubicin, oxaliplatin and capecitabine (EOX); oxaliplatin and capecitabine (OX); and capecitabine alone (X) (all 80% of full dose and unblinded). The primary end point was patient recruitment over an 18-month period. A registration study recorded treatment choice for all patients with advanced GO cancer at trial centres. RESULTS A total of 313 patients were considered for palliative chemotherapy for GO cancer over the 18-month period: 115 received full dose treatment, 89 less than standard treatment or entered 321GO and 111 no treatment. Within 321GO, 55 patients were randomly assigned (19 to OX and X; 17 to EOX). Progression-free survival (PFS) for all patients was 4.4 months and by arm 5.4, 5.6 and 3.0 months for EOX, OX and X, respectively. The number of patients with a good overall treatment utility (OTU), a novel patient-centred endpoint, at 12 weeks was 3 (18%), 6 (32%) and 1 (6%) for EOX, OX and X, respectively. At 6 weeks, 22 patients (41%) had experienced a non-haematologic toxicity ⩾grade 3, most commonly lethargy or diarrhoea. The OTU was prognostic for overall survival in patients alive at week 12 (logrank test P=0.0001). CONCLUSIONS It is feasible to recruit elderly and/or frail patients with advanced GO cancer to a randomised clinical trial. The OX is the preferred regimen for further study. Overall treatment utility shows promise as a comparator between treatment regimens for feasibility and randomised trials in the elderly and/or frail GO cancer population.
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Affiliation(s)
- P S Hall
- Edinburgh Cancer Research Centre, University of Edinburgh, Edinburgh EH4 2XR, UK
| | - S R Lord
- Department of Oncology, University of Oxford, Oxford, UK
| | - M Collinson
- Leeds Institute of Clinical Trials Research, University of Leeds, Leeds, UK
| | - H Marshall
- Leeds Institute of Clinical Trials Research, University of Leeds, Leeds, UK
| | - M Jones
- Leeds Institute of Clinical Trials Research, University of Leeds, Leeds, UK
| | - C Lowe
- NIHR Cancer Research Network Coordinating Centre, Leeds, UK
| | - H Howard
- Leeds Institute of Clinical Trials Research, University of Leeds, Leeds, UK
| | - D Swinson
- Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK
| | - G Velikova
- Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK
| | - A Anthoney
- Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK
| | - R Roy
- Department of Oncology, Castle Hill Hospital, Hull, UK
| | - J Dent
- Department of Oncology, Huddersfield Royal Infirmary, Huddersfield, UK
| | - S Cheeseman
- Department of Oncology, The York Hospital, York, UK
| | - K Last
- Department of Oncology, The York Hospital, York, UK
- Department of Oncology, Bradford Royal Infirmary, Bradford, UK
| | - M T Seymour
- NIHR Cancer Research Network Coordinating Centre, Leeds, UK
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Sathyanarayana P, Maurya S, Ayappa G, Visweswariah SS, Roy R. Studying Binding, Conformational Transition and Assembly of E. Coli Cytolysin a Pore Forming Toxin by Single Molecule Fluorescence. Biophys J 2017. [DOI: 10.1016/j.bpj.2016.11.2833] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Chautard C, Beaucaire C, Gérard M, Phrommavanh V, Nos J, Galoisy L, Calas G, Roy R, Descostes M. Geochemical Characterization of U Tailings (Bois Noirs Limouzat, France). ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.proeps.2016.12.067] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Roy R, Banerjee K, Bhattacharya R, Mukhopadhyay A. 159P Antioxidant effect of mangiferin: The potential anti-cancer therapeutic agent. Ann Oncol 2016. [DOI: 10.1093/annonc/mdw579.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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85
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Roy R, Banerjee K, Bhattacharya R, Mukhopadhyay A. 159P Antioxidant effect of mangiferin: The potential anti-cancer therapeutic agent. Ann Oncol 2016. [DOI: 10.1016/s0923-7534(21)00317-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Affiliation(s)
- J.P. Cheng
- Materials Research Laboratory, The Pennsylvania State University, University Park, PA 16802, USA
| | - D.K. Agrawal
- Materials Research Laboratory, The Pennsylvania State University, University Park, PA 16802, USA
| | - S. Komarneni
- Materials Research Laboratory, The Pennsylvania State University, University Park, PA 16802, USA
| | - M. Mathis
- Materials Research Laboratory, The Pennsylvania State University, University Park, PA 16802, USA
| | - R. Roy
- Materials Research Laboratory, The Pennsylvania State University, University Park, PA 16802, USA
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Bharati S, Ghosal A, Datta I, Aggarwal P, Pal A, Roy R. Pundit Madhusudan Gupta – A versatile genius and forefather of modern medical education in India. J ANAT SOC INDIA 2016. [DOI: 10.1016/j.jasi.2016.08.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Roy R, Som P, Ghosal A, Kundu R. Bilateral multiple renal arteries with anomalous origin of ovarian arteries on both sides: A case report. J ANAT SOC INDIA 2016. [DOI: 10.1016/j.jasi.2016.08.387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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89
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Rajagopal Y, Roy R, Sharma RG, Garg NK, Singh S. Primary Testicular Leiomyosracoma with Local Recurrence: a Case Report. Indian J Surg Oncol 2016; 8:82-84. [PMID: 28127188 DOI: 10.1007/s13193-016-0544-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2013] [Accepted: 07/27/2016] [Indexed: 11/24/2022] Open
Abstract
Primary testicular leiomyosarcomas (LMS) are very rare tumours, with only 20 cases reported so far in the literature (Abdullazade et al. Turk Patoloji Derg 29:227-230, 2013; Komeya et al. Indian J Urol 28:343-346, 2012). We present a case of a 70-year-old male patient who presented with recurrence in the right hemiscrotum 10 weeks after right inguinal orchidectomy for a testicular mass which diagnosed as primary intratesticular leiomyosarcoma. He was treated with wide local excision and adjuvant radiotherapy.
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Affiliation(s)
| | - Rahul Roy
- Department of General Surgery, SMS Medical College, Jaipur, Rajasthan India
| | - Raj Govind Sharma
- Division of Surgical Oncology, SMS Medical College, Jaipur, Rajasthan India
| | - Naresh Kumar Garg
- Division of Surgical Oncology, SMS Medical College, Jaipur, Rajasthan India
| | - Suresh Singh
- Division of Surgical Oncology, SMS Medical College, Jaipur, Rajasthan India
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Dasgupta A, Roy R, Sarkar A. Geometry of the Poisson Boolean model on a region of logarithmic width in the plane. ADV APPL PROBAB 2016. [DOI: 10.1239/aap/1316792662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Consider the region L = {(x, y): 0 ≤ y ≤ Clog(1 + x), x > 0} for a constant C > 0. We study the percolation and coverage properties of this region. For the coverage properties, we place a Poisson point process of intensity λ on the entire half space R+ x R and associated with each Poisson point we place a box of a random side length ρ. Depending on the tail behaviour of the random variable ρ we exhibit a phase transition in the intensity for the eventual coverage of the region L. For the percolation properties, we place a Poisson point process of intensity λ on the region R2. At each point of the process we centre a box of a random side length ρ. In the case ρ ≤ R for some fixed R > 0 we study the critical intensity λc of the percolation on L.
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Abstract
Let ξ1, ξ2,… be a Poisson point process of density λ on (0,∞)d, d ≥ 1, and let ρ, ρ1, ρ2,… be i.i.d. positive random variables independent of the point process. Let C := ⋃i≥1 {ξi + [0,ρi]d}. If, for some t > 0, (0,∞)d ⊆ C, then we say that (0,∞)d is eventually covered by C. We show that the eventual coverage of (0,∞)d depends on the behaviour of xP(ρ > x) as x → ∞ as well as on whether d = 1 or d ≥ 2. These results may be compared to those known for complete coverage of ℝd by such Poisson Boolean models. In addition, we consider the set ⋃{i≥1:Xi=1}
[i,i+ρi], where X1, X2,… is a {0,1}-valued Markov chain and ρ1, ρ2,… are i.i.d. positive-integer-valued random variables independent of the Markov chain. We study the eventual coverage properties of this random set.
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Abstract
We study the asymptotic properties of a minimal spanning tree formed by n points uniformly distributed in the unit square, where the minimality is amongst all rooted spanning trees with a direction of growth. We show that the number of branches from the root of this tree, the total length of these branches, and the length of the longest branch each converges weakly. This model is related to the study of record values in the theory of extreme-value statistics and this relation is used to obtain our results. The results also hold when the tree is formed from a Poisson point process of intensity n in the unit square.
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Banerjee J, Kaur C, Ramaiah S, Roy R, Aladangady N. Factors influencing the uptake of neonatal bereavement support services - Findings from two tertiary neonatal centres in the UK. BMC Palliat Care 2016; 15:54. [PMID: 27357123 PMCID: PMC4928251 DOI: 10.1186/s12904-016-0126-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Accepted: 06/20/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Research on perinatal bereavement services is limited. The aim of the study was to compare the uptake of bereavement support services between two tertiary neonatal units (NNU), and to investigate influencing factors. METHOD The medical and bereavement records of all neonatal deaths were studied from January 2006 to December 2011. Data collected included parent and baby characteristics, mode of death, consent for autopsy and bereavement follow-up. The categorical data were compared by chi-square or Fisher's exact test and continuous data by Wilcoxon signed-rank test; a multivariable regression analysis was performed using STATA 12.0. RESULTS The neonatal deaths of 297 babies (182 in NNU1 and 115 in NNU2) with full datasets were analysed. Baby characteristics were similar between units except for lower median gestational age in NNU1 (p = 0.03). Significantly more NNU1 parents were non-Caucasian (p < 0.01), from lower socio-economic status (p = 0.01) and had previous stillbirth/miscarriage (p = 0.03). More babies had care withdrawn in NNU2 (p < 0.01). A significantly higher proportion of parents from NNU1 (61 %) attended bereavement follow-up compared to NNU2 (34 %; p < 0.01). On multivariable analysis, significantly more parents who were married or co-habiting (p = 0.02) and consented for an autopsy (p = 0.01) attended bereavement services. CONCLUSION Uptake of bereavement services varied between the two NNUs, which could be due to differences in the ethnic and socio-economic mix of the population. Significantly more parents who were married or co-habiting, or consented for autopsy, attended bereavement follow up services.
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Affiliation(s)
- Jayanta Banerjee
- Neonatal Unit, Homerton University Hospital NHS Foundation Trust, Homerton Row, London, E9 6SR, United Kingdom.,Centre for Paediatrics, Barts and the London School of Medicine and Dentistry, Queen Mary University of London, London, UK.,Neonatal Unit, Imperial College Healthcare NHS Trust, London, UK
| | - Charanjit Kaur
- Neonatal Unit, Homerton University Hospital NHS Foundation Trust, Homerton Row, London, E9 6SR, United Kingdom
| | - Sridhar Ramaiah
- Neonatal Unit, Norfolk and Norwich University Hospital NHS Trust, Norwich, UK
| | - Rahul Roy
- Neonatal Unit, Norfolk and Norwich University Hospital NHS Trust, Norwich, UK
| | - Narendra Aladangady
- Neonatal Unit, Homerton University Hospital NHS Foundation Trust, Homerton Row, London, E9 6SR, United Kingdom. .,Centre for Paediatrics, Barts and the London School of Medicine and Dentistry, Queen Mary University of London, London, UK. .,Department of Paediatrics, SDM Medical College and Hospitals, Dharwad, India.
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Hurt C, Bridgewater J, Falk S, Cummins S, Wasan H, Crosby T, Radhakrishna G, Jephcott C, Roy R, McDonald A, Ray R, Joseph G, Staffurth J, Abrams R, Griffiths G, Maughan T, Mukherjee S. O-003 Long-term outcome from the SCALOP trial: a multi-centre randomized phase II trial of gemcitabine or capecitabine-based chemoradiation (CRT) for locally advanced pancreatic cancer (LAPC). Ann Oncol 2016. [DOI: 10.1093/annonc/mdw198.03] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Goyard D, Shiao TC, Fraleigh NL, Vu HY, Lee H, Diaz-Mitoma F, Le HT, Roy R. Expedient synthesis of functional single-component glycoliposomes using thiol-yne chemistry. J Mater Chem B 2016; 4:4227-4233. [PMID: 32264625 DOI: 10.1039/c6tb00344c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The preparation of a set of eight unprecedented amphiphilic neoglycolipids forming liposome nanoparticles is reported. The small library was readily obtained from various peracetylated propargyl glycopyranosides via efficient radical-initiated thiol-yne (TYC) coupling reactions using alkanethiols of different chain lengths. In addition, using sequential thiol-yne, both the nature and positioning of the lipophilic alkanethiols could be varied at will, thus providing unparalleled variability within the glycolipid structures. Two different classes of self-assemblies were prepared from the new neoglycolipids. First, liposomes of 150-300 nm were obtained by solvent injection of their ethanol or tetrahydrofuran (THF) solution in water. The resulting structures were analyzed by dynamic light scattering (DLS) and atomic force microscopy (AFM). The mannosylated lipid nanoparticle (compound 14) showed good stability in water. Alternatively, giant soft unilamellar vesicles were also obtained by film hydration and visualized by differential interference contrast microscopy (DIC). Incorporation of a hydrophobic dye to the solution prior to evaporation allowed visualization by confocal microscopy. Finally, the biological functions of the newly formed glycolipid vesicles were evaluated by multivalent carbohydrate-protein binding interactions using concanavalin A (ConA). Agglutination assays and the binding of glycolipid by dendritic cells (DCs) resulted in an increase in DCs immunostimulatory potential. Importantly, we did not see changes in cells viability at tested doses. This study provides a new, simple and highly efficient methodology to produce novel glyconanoparticle candidate as model in development of vaccine adjuvant and drug delivery system.
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Affiliation(s)
- D Goyard
- Pharmaqam, Department of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre-ville, Montréal, Canada H3C 3P8.
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Abstract
We consider the Poisson Boolean model of percolation where the percolating shapes are convex regions. By an enhancement argument we strengthen a result of Jonasson (2000) to show that the critical intensity of percolation in two dimensions is minimized among the class of convex shapes of unit area when the percolating shapes are triangles, and, for any other shape, the critical intensity is strictly larger than this minimum value. We also obtain a partial generalization to higher dimensions. In particular, for three dimensions, the critical intensity of percolation is minimized among the class of regular polytopes of unit volume when the percolating shapes are tetrahedrons. Moreover, for any other regular polytope, the critical intensity is strictly larger than this minimum value.
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Rishi E, Rishi P, Koundanya VV, Sahu C, Roy R, Bhende PS. Post-traumatic endophthalmitis in 143 eyes of children and adolescents from India. Eye (Lond) 2016; 30:615-20. [PMID: 26869162 DOI: 10.1038/eye.2016.9] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2015] [Accepted: 12/15/2015] [Indexed: 11/09/2022] Open
Abstract
PURPOSE The purpose of this study was to describe clinical features, risk factors, causative organisms, treatment options, and outcomes of post-traumatic endophthalmitis in children and adolescents. METHODS Retrospective interventional case series. Case records of 143 consecutive eyes presenting with post-traumatic endophthalmitis between 1997 and 2007 were reviewed. Univariate and multivariate analysis were done to analyze factors associated with adverse outcomes. RESULTS Mean age at presentation was 9.2 years (median 8 years, range: 2 months to 18 years). Broomstick and hypodermic needle were most common causes for injuries. Common presenting features were cataract (n=51), hypopyon (n=45) and retinal detachment (n=29). Corneal abscess (n=21; OR: 5, CI: 1.4-18.7) and retinal detachment (n=29, OR: 5, CI: 1.6-11.3) were independent risk factors for poor outcome (P=0.04 and 0.012, respectively). Gram-positive bacteria were isolated in 54% (n=31) of culture-positive cases. Forty-nine (34%) patients had ambulatory vision at final visit. Patients who received treatment within 24 h were 3.6 and 9 times more likely to have better anatomical outcome than those treated at 2-7 days, or >7 days, respectively (P=0.0001). Patients undergoing early vitrectomy were 27 times more likely to have better outcome (P=0.0001). CONCLUSION Post-traumatic endophthalmitis in children is more common in boys <10 years of age and most often caused by injury with organic matter. Corneal abscess and retinal detachment are associated with poor outcome. E. fecalis is the most common causative organism. Early vitrectomy results in better outcomes.
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Affiliation(s)
- E Rishi
- Shri Bhagwan Mahavir Vitreoretinal Services, Sankara Nethralya, Chennai, India
| | - P Rishi
- Shri Bhagwan Mahavir Vitreoretinal Services, Sankara Nethralya, Chennai, India
| | - V V Koundanya
- Shri Bhagwan Mahavir Vitreoretinal Services, Sankara Nethralya, Chennai, India
| | - C Sahu
- Shri Bhagwan Mahavir Vitreoretinal Services, Sankara Nethralya, Chennai, India
| | - R Roy
- Shri Bhagwan Mahavir Vitreoretinal Services, Sankara Nethralya, Chennai, India
| | - P S Bhende
- Shri Bhagwan Mahavir Vitreoretinal Services, Sankara Nethralya, Chennai, India
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Becker M, Bader A, Roy R, Seifert M, Choi YH, Falk V, Ma N, Stamm C. Modulation of the Post-Infarct Immune Response by Epicardial Application of Decellularized Amniotic Membrane. Thorac Cardiovasc Surg 2016. [DOI: 10.1055/s-0036-1571712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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