Novel 3-Methyleneisoindolinones Diversified via Intramolecular Heck Cyclization Induce Oxidative Stress, Decrease Mitochondrial Membrane Potential, Disrupt Cell Cycle, and Induce Apoptosis in Head and Neck Squamous Cell Carcinoma Cells

Head and neck squamous cell carcinoma (HNSCC) is the sixth most prevalent cancer in the world and the most prevalent cancer of developing countries. Increased disease burden and a smaller number of approved targeted therapies are a growing concern worldwide. Isoindolinone motifs have been a central part of many pharmacological compounds, and their derivatives possess substantial anticancer potential. However, their anticancer potential against HNSCC has not been well investigated. In the current study, a series of 3-methyleneisoindolinones have been designed and synthesized and their late-stage intramolecular Heck cyclization was achieved to evaluate their anticancer potential against HNSCC cells. Additionally, in silico ADME profiling of synthesized compounds revealed their drug-likeness properties as potential drug candidates. Among the synthesized compounds, 3-bromo-5-methylpyridin-2-yl-3-methyleneisoindolin-1-one, i.e., 3n, with a pyridyl unit exhibited the most significant cytotoxicity against HNSCC cells. The cytotoxic potential of synthesized compounds varied depending on the nature of substituents present and has been well established with structure-activity relationship studies. Further, flow cytometric analysis showed that 3f, 3h, and 3n triggered intracellular oxidative stress, disrupted mitochondrial membrane potential, and interrupted the cell cycle of HNSCC cells in the S-phase and sub-G1 phase. Further, 3f, 3h, and 3n also exhibited pro-apoptotic potential and induced cellular apoptosis in the HNSCC cells. Overall, the findings of this study attributed 3-methyleneisoindolinone chemistry and efficacy evaluation and corroborated their anticancer potential against HNSCC. It will pave the way to further design and optimize novel 3-methyleneisoindolinone as effective antitumor agents, which may provide effective treatment modalities against HNSCC.

On Degree-Based Topological Indices of Carbon Nanocones

Topological descriptors are numerical numbers that are assigned to molecular structures and can predict certain physicochemical properties. Because of their importance in nanotechnology and as developing materials with practical uses, the topological properties of nanocones have received a lot of attention. In this paper, we discuss the ev-degree- and ve-degree-based topological indices for the generalized carbon nanocones, CNC _r [s]. Furthermore, we find numerical computations for certain types of nanocones and plot these numerical results using Matlab programming.

DFT exchange: sharing perspectives on the workhorse of quantum chemistry and materials science

In this paper, the history, present status, and future of density-functional theory (DFT) is informally reviewed and discussed by 70 workers in the field, including molecular scientists, materials scientists, method developers and practitioners. The format of the paper is that of a roundtable discussion, in which the participants express and exchange views on DFT in the form of 302 individual contributions, formulated as responses to a preset list of 26 questions. Supported by a bibliography of 777 entries, the paper represents a broad snapshot of DFT, anno 2022.

Green and Regioselective Approach for the Synthesis of 3-Substituted Indole Based 1,2-Dihydropyridine and Azaxanthone Derivatives as a Potential Lead for SARS-CoV-2 and Delta Plus Mutant Virus: DFT and Docking Studies

Great attempts have been done for the development of novel antiviral compounds against SAR-CoV-2 to end this pandemic situation and save human society. Herewith, we have synthesized 3-substituted indole/2-substituted pyrrole 1,2-dihydropyridine and azaxanthone scaffolds using simple, commercially available starting materials in a one-pot, green, and regioselective manner. Further, the regioselectivity of product formation was confirmed by various studies such as controlled experiments, density functional theory (DFT), Mulliken atomic charge, and electrostatic potential (ESP) surface. In addition, 3-substituted indole 1,2-dihydropyridine was successfully converted into a biologically enriched pharmacophore scaffold, viz., indolylimidazopyridinylbenzofuran scaffold, in excellent yield. Moreover, the synthesized 3-substituted indole 1,2-dihydropyridine/2-substituted pyrroles were analyzed in docking studies for anti-SARS-CoV-2 properties against their main protease (M^pro) and anti-Delta plus properties against their protein of the Delta plus K417N mutant. Further, the drug-likeness prediction was analyzed by the Lipinski rule and other pharmacokinetic properties like absorption, distribution, metabolism, excretion, and toxicity using preADMET prediction. Interestingly, the docking results show that out of 20 synthesized compounds, 5 of them for M^pro of SAR-CoV-2 and 9 of them for 7NX7 spike glycoprotein's A chain of Delta plus K417N show greater binding affinity when compared with remdesivir that is the first to receive FDA approval and is currently used as a potent drug for the treatment of COVID-19. These results suggest that indole/pyrrole substituted 1,2-dihydropyridine derivatives are capable of combating SARS-CoV-2 and its Delta plus mutant.

An Efficient Nanocatalyst Cobalt Copper Zinc Ferrite for the Thermolysis of Ammonium Nitrate

This work reports synthesis and catalytic effect of cobalt copper zinc ferrite (CoCuZnFe₂O₄) on the thermal decomposition of ammonium nitrate (AN). AN is a crystalline hygroscopic powder widely applicable as an oxidizer in the propellant formulations for high energetic materials but requires improvement in its thermal decomposition characteristics. Nanocatalyst spinel ferrite CoCuZnFe₂O₄ was prepared using the coprecipitation method and characterized by various physicochemical instrumental techniques like XRD, FE-SEM, UV-vis, Raman, and TG-DSC. Catalytic study of AN in the presence of nano-CoCuZnFe₂O₄ was investigated using DSC analysis. The Raman and XRD study confirm the formation of ferrite with a crystalline size 9-22 nm. TG suggests that the catalyst was thermally stable up to 400 °C with ∼10% mass loss. The UV-vis study shows that the optical band gap energy of CoCuZnFe₂O₄ was 2.6 eV, which may help in fast acceleration of electrons during thermolysis of AN, making the thermal decomposition of AN more favorable in the presence of CoCuZnFe₂O₄. The thermal decomposition investigation suggests that the activation energy of AN thermolysis in the presence of 2 wt % CoCuZnFe₂O₄ was decreased by ∼37%. It is concluded that CoCuZnFe₂O₄ can be used as an efficient catalyst for improving AN's thermal characteristics.

Green Synthesis of Silver Nanoparticles Using Spilanthes acmella Leaf Extract and its Antioxidant-Mediated Ameliorative Activity against Doxorubicin-Induced Toxicity in Dalton's Lymphoma Ascites (DLA)-Bearing Mice

Green synthesis of metal nanoparticles is a rapidly growing research area in the field of nanotechnology because of their biomedical applications. This study describes the synthesis of silver nanoparticles (AgNPs) using Spilanthes acmella leaf extract and its ameliorative effects against doxorubicin-induced toxicity. The formation of AgNPs was confirmed by a ultraviolet-visible (UV-vis) spectrum that revealed an absorption band at 430 nm. A shift in the absorption bands in Fourier-transform infrared spectroscopy (FT-IR) confirmed the bioactive molecules of S. acmella leaf extract that acted as a reducing and capping agent. The spherical shape of AgNPs was confirmed by scanning electron microscope (SEM) analysis, and the presence of elemental silver was indicated by energy dispersive X-ray spectroscopy (EDS) analysis. X-ray diffraction (XRD) analysis revealed that the crystalline size of the synthesized AgNPs was 6.702 nm. Treatment of Dalton's lymphoma ascites (DLA) mice with 20 mg/kg of doxorubicin (DOX) significantly increased the activities of serum toxicity markers including aspartate amino-transferase (AST), alanine amino-transferase (ALT), and lactate dehydrogenase (LDH). However, compared to DOX alone treatment, the coadministration of DOX and AgNPs reduced AST, ALT, and LDH activities. DOX alone treatment reduced glutathione (GSH) contents and decreased the activities of glutathione-s-transferase (GST) and superoxide dismutase (SOD) in DLA mice. However, the administration of AgNPs to DOX-treated DLA mice increased GSH content and the activities of GST and SOD. Consistently, biosynthesized AgNPs were found to possess significantly higher free-radical scavenging activities when compared to the S. acmella leaf extract, as measured by ABTS, DPPH, and O2 •- assays. The biosynthesized AgNPs also showed significant inhibitory activities against erythrocyte hemolysis and lipid peroxidation in the liver homogenate.

Breathing Mode's Temperature Coefficient Estimation and Interlayer Phonon Scattering Model of Few-Layer Phosphorene

The breathing mode's Raman characteristic is a key parameter that estimates the number of layers and helps to determine interlayer thermal coupling in multilayer phosphorene. However, its temperature coefficient is not investigated yet, probably due to phosphorene's ambient instability, difficulties in capturing its Raman modes, and relatively weak temperature sensitivity than the corresponding primary intralayer Raman modes. Here, we captured the breathing modes' Raman scattering in multiple phosphorene flakes at different temperatures and estimated the corresponding first-order temperature coefficient. The captured modes show a negative temperature coefficient of around -0.0025 cm^-1/K. Besides, we have explored a unique feature of the breathing mode phonon scattering with temperature. The modes closely follow the dominant three-phonon process and four-phonon process scattering phenomena at low- and high-temperature ranges. The three-phonon process scattering is dominant below ∼100 K, shifting to the dominant four-phonon process scattering beyond ∼150 K. Moreover, the phonon modes show anomalous behavior of blue shift with temperature during 100-150 K, probably due to transition in the scattering process. Our study shows the significant dependency of the breathing modes over temperature, which helps to understand and model phosphorene's interlayer thermal and mechanical properties. The study also reflects that phosphorene has significant interlayer heat transport capability due to three- and four-phonon scattering features.

Development of genome-specific SSR markers for the identification of introgressed segments of Sinapis alba in the Brassica juncea background

Sinapis alba L. (white mustard) is recognized for carrying host resistance against several biotic stresses including, Alternaria brassicae, which is responsible for blight disease in cultivated Brassica. However, another cultivated Brassica has a dearth for genetic resistance for these stresses due to its narrow genetic base. Therefore, we performed introgression of the genomic regions of S. alba into backcross progenies of B. juncea + S. alba somatic hybrids. These advanced generations with S. alba chromosomal segments are named B. juncea-S. alba introgression lines (ILs). In the present study, we developed the S. alba genome-specific microsatellites from the draft genome to track the S. alba genome introgressions and responsible regions for resistance to A. brassicae. For developing these SSR markers, the unique contigs of S. alba draft genome were identified through BLASTN with B. juncea, B. rapa, B. nigra, and B. oleracea reference genome assemblies, including mitochondrial and chloroplast genomes, and further used for marker development. Out of 403,423 contigs, we have identified 65,343 non-hit contigs of S. alba that yielded a total of 1231 genome-specific microsatellites, out of which 1107 were expected to produce a single allele upon amplification. Out of the total SSRs, 234 primer pairs were randomly picked from whole-genome and validated between B. juncea and S. alba genomes for their specificity. In the validation experiment, these markers gave a single amplicon into S. alba, while they did not amplify in B. juncea genome. Of these, 59 microsatellites were used to track S. alba introgressions in 80 BC2F3 lines. To the best of our knowledge, this is the first time that these two genetic resources are developed in the form of B. juncea-S. alba ILs and S. alba-specific markers. Therefore, both the resources unlock a new avenue of Brassica breeding for biotic and abiotic stresses along with quality traits.

Supplementary Information

The online version contains supplementary material available at 10.1007/s13205-022-03402-0.

Dissecting the mechanisms of pathogenesis in cerebral malaria

Cerebral malaria (CM) is one of the leading causes of death due to malaria. It is characterised by coma, presence of asexual parasites in blood smear, and absence of any other reason that can cause encephalopathy. The fatality rate for CM is high, and those who survive CM often experience long-term sequelae, including cognitive and motor dysfunctions. It is unclear how parasites sequestered in the lumen of endothelial cells of the blood–brain barrier (BBB), and localised breakdown of BBB can manifest gross physiological changes across the brain. The pathological changes associated with CM are mainly due to the dysregulation of inflammatory and coagulation pathways. Other factors like host and parasite genetics, transmission intensity, and the host’s immune status are likely to play a role in the development and progression of CM. This work focuses on the pathological mechanisms underlying CM. Insights from humans, mice, and in vitro studies have been summarised to present a cohesive understanding of molecular mechanisms involved in CM pathology.

3D-Printed Impedance Micropump for Continuous Perfusion of the Sample and Nutrient Medium Integrated with a Liver-On-Chip Prototype

In recent decades, organ-on-chip devices have gained substantial interest as an alternative for studying the pathophysiological processes relevant to drug screening. Micropumps are being utilized to simulate the in vivo physiological fluid flow more realistically in these organ-on-chip devices. Micropumps play a crucial role in pumping, perfusion, and circulation of fluids in various microdevices such as on-chip PCR, DNA microarrays, miniature bioreactor cell separation, and lab-on-chip biosensing platforms. With the rapid growth in technology, efficient pumping for proper circulation of media and nutrients has become imperative. In this study, we have described the design and development of an open-source impedance micropump for continuous perfusion of nutrient medium in a liver-on-chip prototype. This micropump is controlled via an integrated microcontroller board, with an observed flow rate ranging from 0.2 to 2 mL/min. Google Sketchup 2020 and DLP 3D printing were used to fabricate small precise parts of the impedance micropump. The flow rate was measured to characterize the actuating performance of the micropump. The poly-dimethyl siloxane-based liver-on-chip prototype has been fabricated using a soft photolithography procedure. Further, a study of continuous perfusion of culture medium through the liver-on-chip containing the Hepg2 cell line was successfully performed by integrating it with the impedance micropump. Hoechst staining and Alamar Blue observed cell viability to confirm the healthy cell growth inside the liver-on-chip microfluidic chip. The compactness of the overall setup allows it to fit in a Petri plate, eliminating chances of contamination while cell handling.

Formation of Protamine and Zn-Insulin Assembly: Exploring Biophysical Consequences

The insulin-protamine interaction is at the core of the mode of action in many insulin formulations (Zn + insulin + protamine) and to treat diabetes, in which protamine is added to the stable form of hexameric insulin (Zn-insulin). However, due to the unavailability of quantitative data and a high-resolution structure, the binding mechanism of the insulin-protamine complex remains unknown. In this study, it was observed that Zn-insulin experiences destabilization as observed by the loss of secondary structure in circular dichroism (CD), and reduction in thermal stability in melting study, upon protamine binding. In isothermal titration calorimetry (ITC), it was found that the interactions were mostly enthalpically driven. This is in line with the positive ΔC _m value (+880 cal mol^-1), indicating the role of hydrophilic interactions in the complex formation, with the exposure of hydrophobic residues to the solvent, which was firmly supported by the 8-anilino-1-naphthalene sulfonate (ANS) binding study. The stoichiometry (N) value in ITC suggests the multiple insulin molecules binding to the protamine chain, which is consistent with the picture of the condensation of insulin in the presence of protamine. Atomic force microscopy (AFM) suggested the formation of a heterogeneous Zn-insulin-protamine complex. In fluorescence, Zn-insulin experiences strong Tyr quenching, suggesting that the location of the protamine-binding site is near Tyr, which is also supported by the molecular docking study. Since Tyr is critical in the stabilization of insulin self-assembly, its interaction with protamine may impair insulin's self-association ability and thermodynamic stability while at the same time promoting its flexible conformation desired for better biological activity.

Ancillary-Ligand-Assisted Variation in Nuclearities Leading to the Formation of Di-, Tri-, and Tetranuclear Copper(II) Complexes with Multifaceted Carboxylate Coordination Chemistry

The self-assembly of a carboxylate-based dinucleating ligand, N,N'-bis[2-carboxybenzomethyl]-N,N'-bis[2-pyridylmethyl]-1,3-diaminopropan-2-ol (H₃cpdp), and copper(II) ions in the presence of various exogenous ancillary ligands results in the formation of the new dinuclear complex [Cu₂(cpdp)(μ-Hisophth)]₄·2H₂isophth·21H₂O (1), trinuclear complex [Cu₃(Hcpdp)(Cl)₄] (2), and tetranuclear complex [Cu₄(cpdp)(μ-Hphth)(μ₄-phth)(piconol)(Cl)₂]·3H₂O (3) (H₂phth = phthalic acid; H₂isophth = isophthalic acid; piconol = 2-pyridinemethanol; Cl^- = chloride). In methanol-water, the reaction of H₃cpdp with CuCl₂·2H₂O at room temperature leads to the formation of 2. On the other hand, 1 and 3 have been obtained by carrying out the reaction of H₃cpdp with CuCl₂·2H₂O/m-C₆H₄(CO₂Na)₂ and CuCl₂·2H₂O/o-C₆H₄(CO₂Na)₂/piconol, respectively, in methanol-water in the presence of NaOH at ambient temperature. All three complexes have been characterized by elemental analysis, molar electrical conductivity and magnetic moment measurements, FTIR, UV-vis spectroscopy, and PXRD, including single-crystal X-ray structural analyses. The molecular structure of 1 is based on a μ-alkoxide and μ-isophthalate-bridged dimeric [Cu₂] core; the structure of 2 represents a trimeric [Cu₃] core in which a μ-alcohol-bridged dinuclear [Cu₂] unit is exclusively coupled with a [CuCl₂] species by two μ:η¹:η¹-syn-anti carboxylate groups forming a triangular motif; the structure of 3 embodies a tetrameric [Cu₄] core, with two copper(II) ions in a distorted-octahedral coordination environment, one copper(II) ion in a distorted-trigonal-bipyramidal coordination environment, and the other copper(II) ion in a square-planar coordination environment. In fact, 2 and 3 represent rare examples of copper(II)-based multinuclear complexes showing outstanding features of rich coordination chemistry: (i) using a symmetrical dinucleating ligand, trinuclear complex 2 is generated with four- and five-coordination environments around copper(II) ions; (ii) the unsymmetrical tetranuclear complex 3 is obtained by using the same ligand with four-, five- and six-coordination environments around copper(II) ions; (iii) tetracopper(II) complex 3 shows four different bridging modes of carboxylate groups simultaneously such as μ:η², μ:η¹:η¹, μ₃:η²:η¹:η¹, and μ₄:η¹:η¹:η¹:η¹, the μ₄:η¹:η¹:η¹:η¹ mode of phthalate being unprecedented. The formation of these [Cu₂], [Cu₃], and [Cu₄] complexes can be controlled by changing the exogenous ancillary ligands and pH of the reaction solutions, thus allowing an effective tuning of the self-assembly. The magnetic susceptibility measurements suggest that the copper centers in all three complexes are antiferromagnetically coupled. The thermal properties of 1-3 have been investigated by thermogravimetric and differential thermal analytical (TGA and DTA) techniques, indicating that the decomposition of all three complexes proceeds via multistep processes.

Neuroprotective Effects of Natural Antioxidants Against Branched-Chain Fatty Acid-Induced Oxidative Stress in Cerebral Cortex and Cerebellum Regions of the Rat Brain

Valproic acid (VPA) is short branched-chain fatty acid (BCFA) derived from valeric acids which are naturally produced by Valeriana officinalis (flowering plant). Neurotoxicity caused by BCFA-like VPA may be mediated by oxidative stress, according to research involving the cerebral cortex and cerebellum. In the present study, we explored the possible protective effect of different antioxidants such as melatonin, quercetin, and piperine on VPA exposure by using a supernatant preparation of the cerebral cortex and cerebellum regions of the rat brain. The present study revealed that melatonin, quercetin, and piperine significantly prevented VPA-induced oxidative stress in the cerebral cortex and cerebellum regions. VPA was also observed to lower the level of reduced glutathione, and this effect was significantly mitigated by these antioxidants. Melatonin, quercetin, and piperine also ameliorated and altered the activities of AChE, Na⁺, K⁺ATPase, and MAO in the cerebral cortex and cerebellum. Results of this study also suggest that prior treatment of antioxidants like melatonin, quercetin, and piperine helps in combating the oxidative stress induced by VPA in the cerebral cortex and cerebellum region of the rat brain. Thus, sufficient dietary intake of these antioxidants by individuals at high risk of VPA exposure could prove beneficial in combating the adverse effect of VPA.

Access to Diverse Seleno-spirocyclohexadienones via Ag(II)-Catalyzed Selenylative ipso-Annulation with Se and Boronic Acids

An efficient and straightforward synthesis of diversified seleno-azaspiro-2,5-cyclohexadienones from N-(4-methoxy aryl)propiolamides using elemental selenium and boronic acids has been demonstrated. The reaction proceeds through silver-catalyzed oxidative dearomatization in the presence of potassium persulfate (K₂S₂O₈) as the oxidant. Further, this approach was extended to N-(4-methoxy aryl)propiolates and biaryl ynones to access the corresponding selenylated oxospiro-2,5-cyclohexadienones and spiro[5,5]trienones, respectively. The present three-component method offers the diverse substitutions on selenium involving two C-Se and one C-C bond formations.

Nanomechanical Resonators: Toward Atomic Scale

The quest for realizing and manipulating ever smaller man-made movable structures and dynamical machines has spurred tremendous endeavors, led to important discoveries, and inspired researchers to venture to previously unexplored grounds. Scientific feats and technological milestones of miniaturization of mechanical structures have been widely accomplished by advances in machining and sculpturing ever shrinking features out of bulk materials such as silicon. With the flourishing multidisciplinary field of low-dimensional nanomaterials, including one-dimensional (1D) nanowires/nanotubes and two-dimensional (2D) atomic layers such as graphene/phosphorene, growing interests and sustained effort have been devoted to creating mechanical devices toward the ultimate limit of miniaturization─genuinely down to the molecular or even atomic scale. These ultrasmall movable structures, particularly nanomechanical resonators that exploit the vibratory motion in these 1D and 2D nano-to-atomic-scale structures, offer exceptional device-level attributes, such as ultralow mass, ultrawide frequency tuning range, broad dynamic range, and ultralow power consumption, thus holding strong promises for both fundamental studies and engineering applications. In this Review, we offer a comprehensive overview and summary of this vibrant field, present the state-of-the-art devices and evaluate their specifications and performance, outline important achievements, and postulate future directions for studying these miniscule yet intriguing molecular-scale machines.

Epidermal Inspired Flexible Sensor with Buckypaper/PDMS Interfaces for Multimodal and Human Motion Monitoring Applications

The advancements in the areas of wearable devices and flexible electronic skin have led to the synthesis of scalable, ultrasensitive sensors to detect and differentiate multimodal stimuli and dynamic human movements. Herein, we reveal a novel architecture of an epidermal sensor fabricated by sandwiching the buckypaper between the layers of poly(dimethylsiloxane) (PDMS). This mechanically robust sensor can be conformally adhered on skin and has the perception capability to detect real-time transient human motions and the multimodal mechanical stimuli of stretching, bending, tapping, and twisting. The sensor has feasibility for real-time health monitoring as it can distinguish a wide range of human physiological activities like breathing, gulping, phonation, pulse monitoring, and finger and wrist bending. This multimodal wearable epidermal sensor possesses an ultrahigh gauge factor (GF) of 9178 with a large stretchability of 56%, significant durability for 5000 stretching-releasing cycles, and a fast response/recovery time of 59/88 ms. We anticipate that this novel, simple, and scalable design of a sensor with outstanding features will pave a new way to consummate the requirements of wearable electronics, flexible touch sensors, and electronic skin.

Understanding the Magnetic Microstructure through Experiments and Machine Learning Algorithms

Advanced machine learning techniques have unfurled their applications in various interdisciplinary areas of research and development. This paper highlights the use of image regression algorithms based on advanced neural networks to understand the magnetic properties directly from the magnetic microstructure. In this study, Co/Pd multilayers have been chosen as a reference material system that displays maze-like magnetic domains in pristine conditions. Irradiation of Ar+ ions with two different energies (50 and 100 keV) at various fluences was used as an external perturbation to investigate the modification of magnetic and structural properties from a state of perpendicular magnetic anisotropy to the vicinity of the spin reorientation transition. Magnetic force microscopy revealed domain fragmentation with a smaller periodicity and weaker magnetic contrast up to the fluence of 1014 ions/cm2. Further increases in the ion fluence result in the formation of feather-like domains with a variation in local magnetization distribution. The experimental results were complemented with micromagnetic simulations, where the variations of effective magnetic anisotropy and exchange constant result in qualitatively similar changes in magnetic domains, as observed experimentally. Importantly, a set of 960 simulated domain images was generated to train, validate, and test the convolutional neural network (CNN) that predicts the magnetic properties directly from the domain images with a high level of accuracy (maximum 93.9%). Our work has immense importance in promoting the applications of image regression methods through the CNN in understanding integral magnetic properties obtained from the microscopic features subject to change under external perturbations.

Nonamer dependent RAG cleavage at CpGs can explain mechanism of chromosomal translocations associated to lymphoid cancers

Chromosomal translocations are considered as one of the major causes of lymphoid cancers. RAG complex, which is responsible for V(D)J recombination, can also cleave non-B DNA structures and cryptic RSSs in the genome leading to chromosomal translocations. The mechanism and factors regulating the illegitimate function of RAGs resulting in oncogenesis are largely unknown. Upon in silico analysis of 3760 chromosomal translocations from lymphoid cancer patients, we find that 93% of the translocation breakpoints possess adjacent cryptic nonamers (RAG binding sequences), of which 77% had CpGs in proximity. As a proof of principle, we show that RAGs can efficiently bind to cryptic nonamers present at multiple fragile regions and cleave at adjacent mismatches generated to mimic the deamination of CpGs. ChIP studies reveal that RAGs can indeed recognize these fragile sites on a chromatin context inside the cell. Finally, we show that AID, the cytidine deaminase, plays a significant role during the generation of mismatches at CpGs and reconstitute the process of RAG-dependent generation of DNA breaks both in vitro and inside the cells. Thus, we propose a novel mechanism for generation of chromosomal translocation, where RAGs bind to the cryptic nonamer sequences and direct cleavage at adjacent mismatch generated due to deamination of meCpGs or cytosines.

Design of an Efficient Tin Selenide-Based Ternary Nanocomposite Electrode for Simultaneous Determination of Paracetamol, Tryptophan, and Caffeine

Electrochemical sensors play an essential role in the medical arena through assessing the drug quality and diagnosing diseases. The design of sensors relies on the electroactive properties of the material meticulously chosen to modify the electrode. Here in this work, a facile ternary SnSe/TiO₂@GO electroactive nanocomposite was prepared using tin selenide (SnSe) in combination with titanium dioxide (TiO₂) embedded on graphene oxide (GO). The ternary nanocomposite was characterized by X-ray diffraction, Raman, FT-IR, and X-ray photoelectron spectroscopy, energy dispersive analysis, and scanning electron microscopy. The ternary nanocomposite was then drop-coated on the GC electrode to form the SnSe/TiO₂@GO-GC electrode. Its electrochemical activity was demonstrated for simultaneous determination of paracetamol, tryptophan, and caffeine. The synergetic interaction of the components and their innate virtue showed enriched electrocatalytic activity such as a decrease in overpotential, enhancement in electron transfer, greater sensing ability and selectivity, wide linear range, and low detection limit toward the chosen analytes. Broad linear ranges of concentrations, 0.0089-410, 0.0136-87.66, and 0.0160-355 μM, with detection limits of 0.0030, 0.0053, and 0.0065 μM for paracetamol, tryptophan, and caffeine, respectively, were noticed. The electrode also displayed high selectivity, stability, repeatability, and reproducibility. Importantly, the study was successful for detection and quantification of the above components in real samples of blood serum, pharmaceutical formulations, and beverages.

Mono- and Bimetallic Nanoparticles for Catalytic Degradation of Hazardous Organic Dyes and Antibacterial Applications

In the present work, gold (Au), silver (Ag), and copper (Cu) based mono- and bimetallic NPs are prepared using a cost-effective facile wet chemical route. The pH for the synthesis is optimized in accordance with the optical spectra and supported by the finite difference time domain simulation studies. FESEM and TEM micrographs are used to analyze the morphology of the prepared nanoparticles. TEM images of bimetallic nanoparticles (BMPs) verified their bimetallic nature. XRD studies confirmed the formation of fcc-structured mono- and bimetallic NPs. Photoluminescence studies of the as-synthesized NPs are in good agreement with the previous publications. These synthesized NPs showed enhanced catalytic activity for the reduction/degradation of 4-nitrophenol, rhodamine B, and indigo carmine dyes in the presence of sodium borohydride (NaBH4) compared to NaBH4 alone. For the reduction of 4-nitrophenol, Au, Cu, and CuAg nanoparticles exhibited good catalytic efficiency compared to others, whereas for the degradation of rhodamine B and indigo carmine dyes the catalytic efficiency is comparatively high for CuAg BMPs. Furthermore, the antibacterial assay is carried out, and Ag NPs display effective antibacterial activity against Klebsiella pneumoniae, Salmonella ser. Typhimurium, Acinetobacter baumannii, Shigella flexneri, and Pseudomonas aeruginosa.

A multi-pronged approach to source attribution and apportionment of heavy metals in urban rivers

Heavy metal (HM) contamination of water bodies is caused by both first generation (industries) and second generation (distributed sources, domestic sewage, sediments) sources. We applied a multi-pronged approach to quantify the contribution of first and second generation sources to the HM load in a stream located in an industrialised catchment. We found that, despite strict regulation, first generation sources contributed significantly to the HM load (60%-80%), showing the ineffectiveness of current regulation. Domestic sewage contributed significantly to Cu, Ni, and Mn load (15%-20%). The contribution of distributed sources and sediments to HM load is insignificant. In a 24-hour cycle, HM concentrations frequently exceeded FAO's irrigation water quality standards, with the highest concentrations observed at night. Empirically, the study highlights the continued plight of urban streams in rapidly industrialising centers and the failure to regulate first-generation sources. Methodologically, it demonstrates the importance of temporally intensive measurement of contaminant concentration and load. Policy implications include the need for ambient water quality standards, inclusion of HMs in such standards, load-based regulation, and a problem-oriented monitoring and enforcement approach.

Maltooligosaccharide forming amylases and their applications in food and pharma industry

Oligosaccharides are low molecular weight carbohydrates with a wide range of health benefits due to their excellent bio-preservative and prebiotic properties. The popularity of functional oligosaccharides among modern consumers has resulted in impressive market demand. Organoleptic and prebiotic properties of starch-derived oligosaccharides are advantageous to food quality and health. The extensive health benefits of oligosaccharides offered their applications in the food, pharmaceuticals, and cosmetic industry. Maltooligosaccharides and isomaltooligosaccharides comprise 2-10 glucose units linked by α-1-4 and α-1-6 glycoside bonds, respectively. Conventional biocatalyst-based oligosaccharides processes are often multi-steps, consisting of starch gelatinization, hydrolysis and transglycosylation. With higher production costs and processing times, the current demand cannot meet on a large-scale production. As a result, innovative and efficient production technology for oligosaccharides synthesis holds paramount importance. Malto-oligosaccharide forming amylase (EC 3.2.1.133) is one of the key enzymes with a dual catalytic function used to produce oligosaccharides. Interestingly, Malto-oligosaccharide forming amylase catalyzes glycosidic bond for its transglycosylation to its inheritance hydrolysis and alternative biocatalyst to the multistep technology. Genetic engineering and reaction optimization enhances the production of oligosaccharides. The development of innovative and cost-effective technologies at competitive prices becomes a national priority.

Modelling the first wave of COVID-19 in India

Estimating the burden of COVID-19 in India is difficult because the extent to which cases and deaths have been undercounted is hard to assess. Here, we use a 9-component, age-stratified, contact-structured epidemiological compartmental model, which we call the INDSCI-SIM model, to analyse the first wave of COVID-19 spread in India. We use INDSCI-SIM, together with Bayesian methods, to obtain optimal fits to daily reported cases and deaths across the span of the first wave of the Indian pandemic, over the period Jan 30, 2020 to Feb 15, 2021. We account for lock-downs and other non-pharmaceutical interventions (NPIs), an overall increase in testing as a function of time, the under-counting of cases and deaths, and a range of age-specific infection-fatality ratios. We first use our model to describe data from all individual districts of the state of Karnataka, benchmarking our calculations using data from serological surveys. We then extend this approach to aggregated data for Karnataka state. We model the progress of the pandemic across the cities of Delhi, Mumbai, Pune, Bengaluru and Chennai, and then for India as a whole. We estimate that deaths were undercounted by a factor between 2 and 5 across the span of the first wave, converging on 2.2 as a representative multiplier that accounts for the urban-rural gradient. We also estimate an overall under-counting of cases by a factor of between 20 and 25 towards the end of the first wave. Our estimates of the infection fatality ratio (IFR) are in the range 0.05—0.15, broadly consistent with previous estimates but substantially lower than values that have been estimated for other LMIC countries. We find that approximately 35% of India had been infected overall by the end of the first wave, results broadly consistent with those from serosurveys. These results contribute to the understanding of the long-term trajectory of COVID-19 in India.

Making sense of publicly available epidemiological data for the COVID-19 pandemic in India presents multiple challenges, largely to do with the quality of the data. Here, we describe ways of addressing these questions by studying the data using a well-parameterised, detailed compartmental model together with Bayesian methods, alongside information derived from pan-India serological surveys. We focus on the first wave of the Indian pandemic, across the interval Jan 30, 2020 to Feb 15, 2021. We estimate that deaths were under-counted by a factor between 2 and 5 across the span of the first wave and that cases were under-counted by a factor of between 20 and 25 towards its end. We estimate an infection fatality ratio (IFR) in the range 0.05—0.15. We find that approximately 35% of India had been infected overall by the end of the first wave, a number that helps us better understand the context in which the second and later waves unfolded.

Ga-Doped LLZO Solid-State Electrolyte with Unique "Plate-like" Morphology Derived from Water Hyacinth (Eichhornia crassipes) Aquatic Weed: Waste to Wealth Conversion

An attempt has been made for the first time to convert waste biomass such as water hyacinth (WH) to a functional energy material in a cost-effective way. The present research describes a novel exo-templating methodology to develop engineered microstructure of Ga-doped Li₇La₃Zr₂O₁₂ (Li_6.25La₃Ga_0.25Zr₂O₁₂, referred as WH-Ga-LLZO) solid-state electrolyte for its use in all solid-state lithium batteries (ASSLBs) by mimicking the intercellular structure of water hyacinth (Eichhornia crassipes), an invasive and noxious aquatic plant. The developed exo-templated methodology offers a low calcination temperature of 1000 °C in air where all the major peaks could be indexed as cubic garnet, as confirmed by XRD. The FESEM micrographs revealed a unique "plate-like" morphology that mimicked the intercellular structure of water hyacinth fiber. The bulk lithium-ion conductivity in the WH-Ga-LLZO electrolyte was found to be 3.94 × 10^-5 S/cm. Li/WH-Ga-LLZO/Li cells were galvanostatically cycled for a continuous 295 h with increasing step current densities from 28 μA/cm² without a short circuit. The highest current density as measured for maximum polarization in a symmetric cell was found to be 452 μA/cm². The WH exo-templated methodology was thus developed and optimized and can be extended for synthesizing any application-specific multifunctional materials.

Emerging Biomedical Applications of the Vesicular Stomatitis Virus Glycoprotein

Nanoparticles (NPs) made of metals, polymers, micelles, and liposomes are increasingly being used in various biomedical applications. However, most of these NPs are hazardous for long- and short-term use and hence have restricted biomedical applications. Therefore, naturally derived, biocompatible, and biodegradable nanoconstructs are being explored for such applications. Inspired by the biology of viruses, researchers are exploring the viral proteins that hold considerable promise in biomedical applications. The viral proteins are highly stable and further amenable to suit specific biological applications. Among various viral proteins, vesicular stomatitis virus glycoprotein (VSV-G) has emerged as one of the most versatile platforms for biomedical applications. Starting with their first major use in lentivirus/retrovirus packaging systems, the VSV-G-based reagents have been tested for diverse biomedical use, many of which are at various stages of clinical trials. This manuscript discusses the recent advancements in the use of the VSV-G-based reagents in medical, biological research, and clinical applications particularly highlighting emerging applications in biomedical imaging.

Surface-Coated Cerium Nanoparticles to Improve Chemotherapeutic Delivery to Tumor Cells

The antioxidant property of cerium oxide nanoparticles has increased their demand as a nanocarrier to improve the delivery and therapeutic efficacy of anticancer drugs. Here, we report the synthesis of alginate-coated ceria nanoformulations (ceria NPs) and characterization using FTIR spectroscopy, Raman microscopy, and X-ray diffraction. The synthesized ceria NPs show negligible inherent in vitro toxicity when tested on a MDA-MB-231 breast cancer cell line at higher particle concentrations. Upon loading these particles with doxorubicin (Dox) and paclitaxel (PTX) drugs, we observe a potential synergistic cytotoxic effect mediated by the drug and the ceria NPs, resulting in the better killing capacity as well as suppression of cell migration against the MDA-MB-231 cell line. Further, to verify the immune-escaping capacity before targeting cancer cells, we coated the drug-loaded ceria NPs with the membrane of MDA-MB-231 cells using an extrusion method. The resultant delivery system exhibited in vitro preferential uptake by the MDA-MB-231 cell line and showed reduced uptake by the murine macrophage cell line (RAW 264.7), assigning its potential application as non-immunogenic personalized therapy in targeting and killing of cancer cells.

Regioselective Friedel-Crafts Acylation Reaction Using Single Crystalline and Ultrathin Nanosheet Assembly of Scrutinyite-SnO2

Peculiar physicochemical properties of two-dimensional (2D) nanomaterials have attracted research interest in developing new synthetic technology and exploring their potential applications in the field of catalysis. Moreover, ultrathin metal oxide nanosheets with atomic thickness exhibit abnormal surficial properties because of the unique 2D confinement effect. In this work, we present a facile and general approach for the synthesis of single crystalline and ultrathin 2D nanosheets assembly of scrutinyite-SnO₂ through a simple solvothermal method. The structural and compositional characterization using X-ray diffraction (Rietveld refinement analysis), high-resolution transmission electron microscopy, atomic force microscopy, X-ray photoelectron spectroscopy, and so on reveal that the as-synthesized 2D nanosheets are ultrathin and single crystallized in the scrutinyite-SnO₂ phase with high purity. The ultrathin SnO₂ nanosheets show predominant growth in the [011] direction on the main surface having a thickness of ca. 1.3 nm. The SnO₂ nanosheets are further employed for the regioselective Friedel-Crafts acylation to synthesize aromatic ketones that have potential significance in chemical industry as synthetic intermediates of pharmaceuticals and fine chemicals. A series of aromatic substrates acylated over the SnO₂ nanosheets have afforded the corresponding aromatic ketones with up to 92% yield under solvent-free conditions. Comprehensive catalytic investigations display the SnO₂ nanosheet assembly as a better catalytic material compared to the heterogeneous metal oxide catalysts used so far in the view of its activity and reusability in solvent-free reaction conditions.

Structure and Dynamics of the Isozymes II and IX of Human Carbonic Anhydrase

Human carbonic anhydrases (HCAs) are responsible for the pH control and sensing in our body and constitute key components in the central pH paradigm connected to cancer therapeutics. However, little or no molecular level studies are available on the pH-dependent stability and functional dynamics of the known isozymes of HCA. The main objective of this Article is to report the first bench-marking study on the structure and dynamics of the two most efficient isozymes, HCA II and IX, at neutral pH using classical molecular dynamics (MD) and constant pH MD (CpHMD) simulations combined with umbrella sampling, transition path sampling, and Markov state models. Starting from the known crystal structures of HCA II and the monomeric catalytic domain of HCA IX (labeled as HCA IX-c), we have generated classical MD and CpHMD trajectories (of length 1 μs each). In all cases, the overall stability, RMSD, and secondary structure segments of the two isozymes are found to be quite similar. Functionally important dynamics of these two enzymes have been probed in terms of active site hydration, coordination of the Zn(II) ion to a transient excess water, and the formation of putative proton transfer paths. The most important difference between the two isozymes is observed for the side-chain fluctuations of His-64 that is expected to shuttle an excess proton out of the active site as a part of the rate-determining intramolecular proton transfer reaction. The relative stability of the stable inward and outward conformations of the His-64 side-chain and the underlying free energy surfaces are found to depend strongly on the isozyme. In each case, a lower free energy barrier is detected between predominantly inward conformations from predominantly outward ones when simulated under constant pH conditions. The kinetic rate constants of interconversion between different free energy basins are found to span 10⁷-10⁸ s^-1 with faster conformational transitions predicted at constant pH condition. The estimated rate constants and free energies are expected to validate if the fluctuation of the His-64 side-chain in HCA IX may have a significance similar to that known in the multistep catalytic cycle of HCA II.

Polyoxometalate-Supported Copper(I)-Pyrazole Complex: Unusual Stability, Geometrical Isomers, Organic Transformation, and Computation

We have described the synthesis and characterization of a polyoxometalate (POM)-supported copper(I)-pyrazole complex, [Cu^I(C₁₅H₁₂N₂)₂] [PW₁₂O₄₀{Cu^I(C₁₅H₁₂N₂)₂}₂]·CH₃OH (1). There are three Cu(I)-pyrazole coordination complexes in compound 1, out of which two are supported by the {PW₁₂O₄₀}^3- Keggin POM by coordinate covalent bonds from the POM surface through oxygen donors to the Cu(I) centers of two Cu(I) complexes and one remains uncoordinated to the POM surface, acting as a cationic complex species in the crystals of 1. The POM-coordinated Cu(I) complexes have a T-shaped geometry, and the uncoordinated Cu(I) complex is a linear one. During the solvothermal synthesis of compound 1, remarkably, the associated 1,5-diphenylpyrazole ligand is formed from cinnamaldehyde phenylhydrazone through oxidative cyclization at the cost of Cu(II) reduction to Cu(I), and then, these two (copper(I) and pyrazole ligand) form the coordination complex. Compound 1 undergoes desolvation on heating the single crystals of compound 1 at 55 °C in the aerial atmosphere with the formation of the desolvated compound [Cu^I(C₁₅H₁₂N₂)₂][PW₁₂O₄₀{Cu^I(C₁₅H₁₂N₂)₂}₂] (2). Interestingly, when an aqueous suspension of compound 1 is bubbled with O₂ gas at room temperature, it undergoes solid-to-solid transformation, resulting in the formation of the compound [Cu^I(C₁₅H₁₂N₂)₂]₃[PW₁₂O₄₀] (3). Compounds 1, 2, and 3 have been characterized by routine spectral analyses (including cyclic voltammetry and X-ray photoelectron spectroscopy (XPS) studies) and unambiguously by single-crystal X-ray crystallography. We have performed density functional theory (DFT) calculations on compound 1 to understand the rationale of its unusual stability toward oxidation.

Molecular mapping and transfer of a novel brown planthopper resistance gene bph42 from Oryza rufipogon (Griff.) To cultivated rice (Oryza sativa L.)

BACKGROUND

Brown planthopper (BPH), Nilaparvata lugens (Stål), is one of the most destructive pests of rice accounting for 52% of annual yield loss. The breakdown of resistance against known BPH biotypes necessitates the identification and deployment of new genes from diverse sources. The current study aimed at mapping and transfer of a novel BPH resistance gene from the wild species of rice O. rufipogon accession CR100441 to the elite rice cultivar against BPH biotype 4.

METHODS AND RESULTS

The phenotypic screening against BPH biotype 4 was conducted using the standard seedbox screening technique (SSST). Inheritance study using damage score caused by BPH infestation at the seedling stage indicated the presence of a single major recessive gene with the segregation ratio of susceptible to resistant plants in 3:1 (210:66, χ2c = 0.17 ≤ χ20.05,1 = 3.84). The genotyping of the mapping population was done using polymorphic microsatellite markers between PR122 and O.rufipogon acc.CR100441 spanning all the 12 chromosomes of rice. A total of 537 SSR markers were used to map a BPH resistance gene (designated as bph42) on the short arm of chromosome 4 between RM16282 and RM6659. QTL analysis identified a peak marker RM16335 contributing 29% of the phenotypic variance at 40.76 LOD.

CONCLUSIONS

The identified marker co-segregates with the bph42 and hence could be efficiently used for marker-assisted selection (MAS) for the transfer of resistance into elite rice cultivars. The introgression lines with higher yield and BPH resistance were identified and are under advanced yield trails for further varietal release.

Taxonomical and functional bacterial community profiling in disease-resistant and disease-susceptible soybean cultivars

Highly varied bacterial communities inhabiting the soybean rhizosphere perform important roles in its growth and production; nevertheless, little is known about the changes that occur in these communities under disease-stress conditions. The present study investigated the bacterial diversity and their metabolic profile in the rhizosphere of disease-resistant (JS-20-34) and disease-susceptible (JS-335) soybean (Glycine max (L.) Merr.) cultivars using 16S rRNA amplicon sequencing and community-level physiological profiling (CLPP). In disease-resistant soybean (AKADR) samples, the most dominating phyla were Actinobacteria (40%) followed by Chloroflexi (24%), Proteobacteria (20%), and Firmicutes (12%), while in the disease-susceptible (AKADS) sample, the most dominating phyla were Proteobacteria (35%) followed by Actinobacteria (27%) and Bacteroidetes (17%). Functional profiling of bacterial communities was done using the METAGENassist, and PICRUSt2 software, which shows that AKADR samples have more ammonifying, chitin degrading, nitrogen-fixing, and nitrite reducing bacteria compared to AKADS rhizosphere samples. The bacterial communities present in disease-resistant samples were significantly enriched with genes involved in nitrogen fixation, carbon fixation, ammonification, denitrification, and antibiotic production. Furthermore, the CLPP results show that carbohydrates and carboxylic acids were the most frequently utilized nutrients by the microbes. The principal component analysis (PCA) revealed that the AKADR soils had higher functional activity (strong association with the Shannon-Wiener index, richness index, and hydrocarbon consumption) than AKADS rhizospheric soils. Overall, our findings suggested that the rhizosphere of resistant varieties of soybean comprises of beneficial bacterial population over susceptible varieties.

Effect of Structural Variation on Spectral, NLO Properties, and Biological Activity of Pyrrole Hydrazones

This paper describes spectral, non-linear optical (NLO), and biological activity variation of pyrrole hydrazones as a result of structural variation. In order to study structure-property variation, pyrrole hydrazones (3A, 3B, and 3C) were synthesized in both solid and solution phases. The grinding solvent-free method becomes rapid, easy, convenient, useful, sustainable, and eco-friendly green synthesis as compared to the classical solution phase reactions. The structure of pyrrole hydrazones has been elucidated by microanalysis and quantum chemical calculations. The intense emission at λ_em 521 nm (3A and 3B) and 617 nm (3C) in the visible (green and orange) region with Stokes shifts at 195, 160, and 282 nm reveals that the studied compounds work as good photoluminescent materials. All compounds show strong n-π* and charge transfer (π-π*) transitions in the UV-vis region with high extinction coefficients. In the studied systems (3A, 3B, and 3C), the orbital overlap between σ(NH-O) → σ*(NH-O) is found due to intra-molecular charge transfer. The first hyperpolarizabilities were found to be 48.83 × 10^-30 esu for 3B and 63.89 × 10^-30 esu for 3C, showing variation with structure. Their high values indicate more suitability for NLO application. Incorporation and/or change in position of electron-withdrawing groups increase the β₀ values of 3B and 3C compared to 3A. The β value also increases monotonically as the polarity of the solvents increases. The red shift in N-H and C=O stretching Fourier-transform infrared bonds is due to the formation of dimers. The synthesized 3A, 3B, and 3C show good antimicrobial activity and are predicted to be potential antibacterial and antifungal drugs. The 3B has more molar refractivity (122.16 esu) than 3A and 3C and correlates well with the calculated binding affinity and experimental antimicrobial data.

Structural, Optical, Photoelectrochemical, and Electronic Properties of the Photocathode CuS and the Efficient CuS/CdS Heterojunction

We report a facile synthesis of CuS and CdS nanoparticles using a cheap solution-processed chemical bath method forming heterogeneous nucleation. The optical, structural, photoelectrochemical (PEC), and electronic properties are studied by implementing relevant experimental techniques. The estimated optical band gap of ∼2.10 eV of CuS designates potential application in inexpensive photocatalysis and solar cells. Further, the valence band and conduction band positions of CuS and CdS are evaluated using cyclic voltammetry curves. Narrow conduction and valence band offset potentials measured at the CuS/CdS heterojunction are encouraging factors for the PEC application. The electronic properties are supported by the current density vs potential plots (J-V) with an improved short-circuit current density of 0.71 mA cm^-2 for the heterojunction compared to bare CuS showing 0.15 μA cm^-2. The determined PCE of the heterojunction CuS/CdS is 0.65%.

Palladium-Supported Polydopamine-Coated NiFe2O4@TiO2: A Sole Photocatalyst for Suzuki and Sonogashira Coupling Reactions under Sunlight Irradiation

The effective utilization of solar energy in synthetic organic chemistry has gained extensive attention owing to its enormous energy and environmentally benign nature. In this context, we designed and synthesized a magnetically retrievable, sole palladium (Pd)-supported polydopamine-coated core@shell (NiFe₂O₄@TiO₂) heterogeneous nanophotocatalyst for Suzuki and Sonogashira coupling reactions under sunlight irradiation. The synthesized catalyst was characterized by powder X-ray diffraction (PXRD), Fourier-transform infrared, UV-vis, scanning electron microscopy, energy-dispersive X-ray spectroscopy, transmission electron microscopy, X-ray photoelectron spectroscopy, and vibrating sample magnetometer analysis. The photocatalytic activity of the synthesized nanocatalyst under sunlight irradiation was assessed for both Suzuki and Sonogashira coupling reactions, where it worked excellently well with a high yield of the product up to 98 and 96%, respectively. Its efficacy was also investigated in the conversion of substituted substrates in both the coupling reactions into desired biaryls and diarylacetylenes. Unique features of the synthesized catalyst are (i) its effective performance for both the aforesaid coupling reactions under ambient reaction conditions for a short reaction time in polar protic solvents (ethanolic water/EtOH) with good yield without any byproduct, (ii) magnetic retrieval of the catalyst from the reaction mixture employing an external magnet is an added advantage, and (iii) the retrieved catalyst could potentially be reutilized for up to five consecutive runs without appreciable diminution of catalytic efficacy, and its stability was confirmed by inductively coupled plasma optical emission spectroscopy analysis and XRD.

DRR Dhan 58, a Seedling Stage Salinity Tolerant NIL of Improved Samba Mahsuri Shows Superior Performance in Multi-location Trials

BACKGROUND

Improved Samba Mahsuri (ISM) is an elite, high-yielding, bacterial blight resistant, fine-grained rice variety with low glycaemic index. It is highly sensitive to salt stress, particularly at seedling stage, which significantly reduces its yield potential in coastal areas. A salinity tolerant QTL, Saltol, associated with seedling stage tolerance was previously mapped on chromosome 1 (10.6-11.5 Mb) from the Indian landrace, Pokkali and is effective in different genetic backgrounds. The objective of this study was to enhance salinity tolerance of ISM by incorporating the Saltol QTL through marker-assisted backcross breeding using the breeding line, FL478 (Pokkali/IR29).

RESULTS

Foreground selection was carried out at each generation using five Saltol-specific markers and three bacterial blight resistance genes, Xa21, xa13 and xa5. Background selection was conducted using 66 well distributed polymorphic SSR markers and at the BC₃F₂ generation, a single plant with maximum recurrent parent genome recovery (95.3%) was identified and advanced to the BC₃F₄ generation. Based on bacterial blight resistance, seedling stage salinity tolerance and resemblance to ISM, four advanced breeding lines were selected for testing in replicated experiments near Hyderabad, India. A promising near-isogenic line, DRR Dhan 58, was evaluated in multi-location trials-coastal salinity and it showed significant salinity tolerance, resistance to bacterial blight disease, high yield and excellent grain quality during the 2019 and 2020 trials. DRR Dhan 58 was 95.1% similar to ISM based on genotyping with the 90 K SNP chip. Whole genome resequencing analysis of Pokkali and FL478 which were salinity tolerant checks, ISM and DRR Dhan 58 showed a high degree of relatedness with respect to the candidate gene loci for Saltol and OsSKC1 (Shoot K⁺ Concentration 1).

CONCLUSION

DRR Dhan 58, possessing Saltol and three bacterial blight resistance genes (Xa21, xa13 and xa5) in the genetic background of the Indian mega-variety of rice, Samba Mahsuri, was developed for potential cultivation in areas prone to seedling stage salinity, as well as areas with endemic bacterial blight disease. This entry had a 24% yield advantage over the recurrent parent ISM under coastal saline conditions in multi-location trials and was recently released for commercial cultivation in India.

Exploring the Cobalt-Histidine Complex for Wide-Ranging Colorimetric O2 Detection

Developing a robust, cost-effective, and user-friendly sensor for monitoring molecular oxygen (O₂) ranging from a minute to a medically relevant level (85-100%) in a stream of flowing breathable gas is vital in various industrial domains. Here, we report an innovative application of the cobalt(l-histidine)₂ complex, a bioinspired model of O₂-carrying metalloproteins, for rapid and reliable sensing of O₂ from 0 to 100% saturation levels under realistic conditions. We have established two distinct colorimetric O₂ detection techniques, which can be executed with the use of a common smartphone camera and readily available color-detecting software. A series of spectroscopic experiments were performed to demonstrate the molecular-level alteration in cobalt(l-histidine)₂ following its exposure to oxygen, leading to an exclusive pink-to-brown color change. Therefore, this study establishes a template for designing bioinspired molecular complexes for O₂ sensing, leading to practical and straightforward solutions. This metal-amino acid complex's broad-spectrum sensing of O₂ has widened the scope of bioinspired model complexes for divergent applications in industrial sectors.

Synthesis and Characterization of Ternary α-Fe2O3/NiO/rGO Composite for High-Performance Supercapacitors

Herein, pure α-Fe₂O₃, binary α-Fe₂O₃/NiO, and ternary α-Fe₂O₃/NiO/rGO composites were prepared by a hydrothermal method. The properties of the prepared materials were studied by powder X-ray diffraction, scanning electron microscopy, TEM, XPS, and Brunauer-Emmett-Teller techniques. The clusters of smaller α-Fe₂O₃ nanoparticles (∼30 nm) along with conducting NiO was freely covered by the rGO layer sheet, which offer a higher electrode-electrolyte interface for improved electrochemical performance. The ternary composite has shown a higher specific capacitance of 747 F g^-1@ a current density of 1 A g^-1 in a 6 M KOH solution, when compared with that of α-Fe₂O₃/rGO (610 F g^-1@1 A g^-1) and α-Fe₂O₃ (440 F g^-1@1 A g^-1) and the nanocomposite. Moreover, the ternary α-Fe₂O₃/NiO/rGO composite exhibited a 98% rate capability @ 10 A g^-1. The exceptional electrochemical performance of ternary composites has been recognized as a result of their well-designed unique architecture, which provides a large surface area and synergistic effects among all three constituents. The asymmetric supercapacitor (ASC) device was assembled using the ternary α-Fe₂O₃/NiO/rGO composite as the anode electrode (positive) material and activated carbon as the cathode (negative) material. The ASC device has an energy density of 35.38 W h kg^-1 at a power density of 558.6 W kg^-1 and retains a 94.52% capacitance after 5000 cycles at a 1 A g^-1 current density.

Casein-Coated Molybdenum Disulfide Nanosheets Augment the Bioactivity of Alginate Microspheres for Orthopedic Applications

Defects and disorders of the bone due to disease, trauma, or abnormalities substantially affect a person's life quality. Research in bone tissue engineering is motivated to address these clinical needs. The present study demonstrates casein-mediated liquid exfoliation of molybdenum disulfide (MoS₂) and its coupling with alginate to create microspheres to engineer bone graft substitutes. Casein-exfoliated nano-MoS₂ was chemically characterized using different analytical techniques. The UV-visible spectrum of nano-MoS₂-2 displayed strong absorption peaks at 610 and 668 nm. In addition, the XPS spectra confirmed the presence of the molybdenum (Mo, 3d), sulfur (S, 2p), carbon (C, 1s), oxygen (O, 1s), and nitrogen (N, 1s) elements. The exfoliated MoS₂ nanosheets were biocompatible with the MG-63, MC3T3-E1, and C2C12 cells at 250 μg/mL concentration. Further, microspheres were created using alginate, and they were characterized physiochemically and biologically. Stereomicroscopic images showed that the microspheres were spherical with an average diameter of 1 ± 0.2 mm. The dispersion of MoS₂ in the alginate matrix was uniform. The alginate-MoS₂ microspheres promoted apatite formation in the SBF (simulated body fluid) solution. Moreover, the alginate-MoS₂ was biocompatible with MG-63 cells and promoted cell proliferation. Higher alkaline phosphatase activity and mineralization were observed on the alginate-MoS₂ with the MG-63 cells. Hence, the developed alginate-MoS₂ microsphere could be a potential candidate for a bone graft substitute.

Seed nutripriming with zinc is an apt tool to alleviate malnutrition

More than 2 billion people worldwide suffer from micronutrient malnutrition, sometimes known as hidden hunger. Zn malnutrition affects around a third of the world's population. The physicochemical features of soil, which limit the availability of Zn to plants, cause Zn deficiency. The eating habits of certain populations are more depended on Zn-deficient staple foods. Due to the high expense and certain interventions such as diet diversification, zinc supplementation and food fortification cannot be achieved in disadvantaged populations. Biofortification is the most practical technique for alleviating Zn malnutrition. Seed priming with nutrients is a promising biofortification approach for edible crops. Seed nutripriming with zinc is a cost-effective and environmentally benign approach of biofortification. Seeds can be nutriprimed with Zn using a variety of methods such as Zn fertilisers, Zn chelated compounds and Zn nanoparticles. Nutripriming with nanoparticles is gaining popularity these days due to its numerous advantages and vast biofortification potential. Seeds enriched with Zn also aid plant performance in Zn-deficient soil. Zn an essential trace element can regulate physiological, biochemical and molecular processes of plant cells and thus can enhance germination, growth, yield and bioavailable Zn in edible crops. Moreover, zinc emerges as an important element of choice for the management of COVID-19 symptoms.

Plasmonic Metal/Semiconductor Heterostructure for Visible Light-Enhanced H2 Production

A plasmonic Ag/Bi₂WO₆ heterostructure, having Ag NPs deposited on Bi₂WO₆, is obtained by a hydrothermal and photodeposition method. The synthesized Ag/Bi₂WO₆ composite exhibits strong visible light absorption with a localized surface plasmon resonance (LSPR) and shows an enhanced photoabsorption property. It is demonstrated that such a Ag/Bi₂WO₆ heterostructure shows excellent plasmon-enhanced photocatalytic activity in the dehydrogenation of ammonia borane (NH₃BH₃) solution under visible light irradiation, which is due to the results from the synergetic effect between Ag NPs and emerging W⁵⁺ ions. More importantly, the performance of a Ag/Bi₂WO₆ hybrid is almost eight times higher than that of sole Bi₂WO₆ nanosheets. The introduction of LSPR of Ag in Bi₂WO₆ improves the electrical conductivity of the composite and lowers the recombination rate of charge carriers. This study opens up the opportunity of rationally fabricating plasmonic metal/semiconductor heterostructures for highly efficient photocatalysis.

Synthesis of a Pyridone-Based Phthalimide Fleximer and Its Characterization and Supramolecular Property Evaluation

In this study, a novel pyridone-based phthalimide fleximer, that is, ethyl 5-cyano-6-(3-(1,3-dioxoisoindolin-2-yl)propoxy)-4-(3-methoxyphenyl)-2-methylnicotinate, was synthesized, and its structure was established by the single-crystal X-ray diffraction method. The supramolecular self-assembly of the titled compound through noncovalent interactions was then investigated thoroughly. The titled compound crystallized with two symmetry-independent molecules (A and B, Z' = 2). In agreement with experimental observations, our density functional theory calculations also showed that the titled compound has a flexible motif and can occur in various conformations, including molecules A and B. The investigation of the supramolecular framework revealed that the molecules are notably bound by the nonclassical C-H···O and C-H···N hydrogen bonds and C-H···π interactions. Hirshfeld surface analysis was carried out to quantify the various intermolecular interactions. The dual anti-inflammatory activity of the tilted compound was also explored by molecular docking in the active sites of 5-LOX and COX-2 receptors, which revealed good binding affinities of -9.0 and -8.6 kcal/mol, respectively.

Epigenomics of conventional type-I dendritic cells depicted preferential control of TLR9 versus TLR3 response by NCoR1 through differential IRF3 activation

Tight control of gene regulation in dendritic cells (DCs) is important to mount pathogen specific immune responses. Apart from transcription factor binding, dynamic regulation of enhancer activity through global transcriptional repressors like Nuclear Receptor Co-repressor 1 (NCoR1) plays a major role in fine-tuning of DC responses. However, how NCoR1 regulates enhancer activity and gene expression in individual or multiple Toll-like receptor (TLR) activation in DCs is largely unknown. In this study, we did a comprehensive epigenomic analysis of murine conventional type-I DCs (cDC1) across different TLR ligation conditions. We profiled gene expression changes along with H3K27ac active enhancers and NCoR1 binding in the TLR9, TLR3 and combined TLR9 + TLR3 activated cDC1. We observed spatio-temporal activity of TLR9 and TLR3 specific enhancers regulating signal specific target genes. Interestingly, we found that NCoR1 differentially controls the TLR9 and TLR3-specific responses. NCoR1 depletion specifically enhanced TLR9 responses as evident from increased enhancer activity as well as TLR9-specific gene expression, whereas TLR3-mediated antiviral response genes were negatively regulated. We validated that NCoR1 KD cDC1 showed significantly decreased TLR3 specific antiviral responses through decreased IRF3 activation. In addition, decreased IRF3 binding was observed at selected ISGs leading to their decreased expression upon NCoR1 depletion. Consequently, the NCoR1 depleted cDC1 showed reduced Sendai Virus (SeV) clearance and cytotoxic potential of CD8⁺ T cells upon TLR3 activation. NCoR1 directly controls the majority of these TLR specific enhancer activity and the gene expression. Overall, for the first time, we revealed NCoR1 mediates transcriptional control towards TLR9 as compared to TLR3 in cDC1.

Cyclodextrin Derivative Enhances the Ophthalmic Delivery of Poorly Soluble Azithromycin

Azithromycin (AZM), a macrolide antibiotic used for the treatment of chlamydial conjunctivitis, is less effective for the treatment of this disease due to its poor bioavailability (38%). Various alternatives have been developed for improving the physicochemical properties (i.e., solubility) of the AZM without much success. To overcome the problems associated with AZM, an inclusion complex employing a modified cyclodextrin, i.e., sulfobutylether-β-cyclodextrin (SBE-β-CD), was prepared and characterized by phase solubility studies and PXRD techniques. The results portrayed the formation of an inclusion complex of AZM with SBE-β-CD in 1:2 molar stoichiometric ratios. This inclusion complex was later incorporated into a polymer matrix to prepare an in situ gel. Various combinations of Carbopol 934P and hydroxypropyl methylcellulose (HPMC K4M) polymers were used and evaluated by rheological and in vitro drug release studies. The optimized formulation (F4) containing Carbopol 934P (0.2% w/v) and HPMC K4M (0.2% w/v) was evaluated for clarity, pH, gelling capacity, drug content, rheological properties, in vitro drug release pattern, ocular irritation test, and antimicrobial efficacy. Finally, owing to the improved antimicrobial efficacy and increased residence time, the AZM:SBE-β-CD in situ gel was found to be a promising formulation for the efficient treatment of bacterial ocular disease.

Synthesis and Emergent Photophysical Properties of Diketopyrrolopyrrole-Based Supramolecular Self-Assembly

Diketopyrrolopyrrole (DPP)-based molecular semiconductors exhibit intriguing optical and charge transport properties. Herein, we rationally design a series of electronically identical but structurally distinct Hamilton receptor (HR)-based supramolecular assembly of DPP. The HR endows supramolecular assemblies via hydrogen bonding with enhanced structural ordering and excitonic couplings. The mechanism of supramolecular self-assembly was probed by diffusion ordered spectroscopy (DOSY) nuclear magnetic resonance (NMR) and solid-state IR spectroscopy studies. We investigated the morphology of self-assembly, photophysical and electrochemical properties and compared them with the identical DPP molecular structures without HRs. The microstructure of self-assembly was probed with atomic force microscopy in thin films. Subsequently, the influence of solid-state packing was studied by single-crystal X-ray diffraction. The single-crystal structure of HR-TDPP-C₂₀ reveals slipped stack arrangements between the two neighboring chromophores with π-π stacking distance and slip angle of 3.55 Å and 35.4°, respectively. Notably, the slight torsional angle of 1° between thiophene and lactam rings and small π-π stacking distance suggest a significant intermolecular coupling between thiophene (D) and lactam (A) rings. This intramolecular coupling between two π-π chromophore stacks manifests in their optical properties. In this manuscript, we report rational design and synthesis of supramolecular self-assembly of DPP with a collection of compelling structural and optical properties.

Synthesis and Immunological Activity of Novel Oligo(ethylene glycol) Analogues of α-Galactosylceramide

CD1d-arbitrated activation of i-NKT cells by α-galactosylceramide results in the effective secretion of Th1 and Th2 cytokines, with adjuvanticity skewed toward Th2 immunity. However, the polarization of immune response could be achieved by suitable modification of the glycolipid structure. In the current study, novel glycolipids with an amphiphilic oligo ethylene glycol lipid moiety bearing the benzyloxy group at the terminus on the acyl arm of sphingosine, exhibited CD1d ligand binding as quantified by IL-2 cytokine production. When immunized with quadrivalent split influenza virus in BALB/c mice, the novel ceramide analogues with a longer oligo (ethylene glycol) chain length induced significant levels of antibody (IgG) with Th1-polarized immune response.

Organogels Fabricated from Self-Assembled Nanotubes Containing Core Substituted Perylene Diimide Derivative

Perylene-based organogels are well-known for their applications as sensors and optoelectronic materials. Among them, core-substituted perylene diimide-based organogels are rarely explored. Herein, the hierarchical self-assembly mechanism of a newly synthesized, amide-linked core-substituted perylene diimide derivative, which formed organogels in organic solvents like toluene and methyl cyclohexane (MCH), is discussed. These organogels are composed of one-dimensional molecular aggregates like nanofibers and nanotubes. Organogels composed of nanofibers are very frequent. On the contrary, for the first time, we have encountered a perylene diimide-based organogel consisting of self-assembled nanotubes. The molecular interactions, molecular packing, and rheological properties of this organogel are also discussed.

Exploring EEG spectral and temporal dynamics underlying a hand grasp movement

For brain-computer interfaces, resolving the differences between pre-movement and movement requires decoding neural ensemble activity in the motor cortex’s functional regions and behavioural patterns. Here, we explored the underlying neural activity and mechanisms concerning a grasped motor task by recording electroencephalography (EEG) signals during the execution of hand movements in healthy subjects. The grasped movement included different tasks; reaching the target, grasping the target, lifting the object upwards, and moving the object in the left or right directions. 163 trials of EEG data were acquired from 30 healthy participants who performed the grasped movement tasks. Rhythmic EEG activity was analysed during the premovement (alert task) condition and compared against grasped movement tasks while the arm was moved towards the left or right directions. The short positive to negative deflection that initiated around -0.5ms as a wave before the onset of movement cue can be used as a potential biomarker to differentiate movement initiation and movement. A rebound increment of 14% of beta oscillations and 26% gamma oscillations in the central regions was observed and could be used to distinguish pre-movement and grasped movement tasks. Comparing movement initiation to grasp showed a decrease of 10% in beta oscillations and 13% in gamma oscillations, and there was a rebound increment 4% beta and 3% gamma from grasp to grasped movement. We also investigated the combination MRCPs and spectral estimates of α, β, and γ oscillations as features for machine learning classifiers that could categorize movement conditions. Support vector machines with 3^rd order polynomial kernel yielded 70% accuracy. Pruning the ranked features to 5 leaf nodes reduced the error rate by 16%. For decoding grasped movement and in the context of BCI applications, this study identifies potential biomarkers, including the spatio-temporal characteristics of MRCPs, spectral information, and choice of classifiers for optimally distinguishing initiation and grasped movement.

Plasma Functionalized Carbon Interfaces for Biosensor Application: Toward the Real-Time Detection of Escherichia coli O157:H7

Nonthermal plasma, a nondestructive, fast, and highly reproducible surface functionalization technique, was used to introduce desired functional groups onto the surface of carbon powder. The primary benefit is that it is highly scalable, with a high throughput, making it easily adaptable to bulk production. The plasma functionalized carbon powder was later used to create highly specific and low-cost electrochemical biosensors. The functional groups on the carbon surface were confirmed using NH₃-temperature-programmed desorption (TPD) and X-ray photoelectron spectroscopy (XPS) analysis. In addition, for biosensing applications, a novel, cost-effective, robust, and scalable electrochemical sensor platform comprising in-house-fabricated carbon paste electrodes and a miniaturized E-cell was developed. Biotin-Streptavidin was chosen as a model ligand-analyte combination to demonstrate its applicability toward biosensor application, and then, the specific identification of the target Escherchia coli O157:H7 was accomplished using an anti-E. coli O157:H7 antibody-modified electrode. The proposed biosensing platform detected E. coli O157:H7 in a broad linear range of (1 × 10^-1-1 × 10⁶) CFU/mL, with a limit of detection (LOD) of 0.1 CFU/mL. In addition, the developed plasma functionalized carbon paste electrodes demonstrated high specificity for the target E. coli O157:H7 spiked in pond water, making them ideal for real-time bacterial detection.

Mitochondria-Related Apoptosis Regulation by Minocycline: A Study on a Transgenic Drosophila Model of Alzheimer's Disease

Alzheimer's disease (AD) is a very complicated and multifactorial neurological disorder having limited therapeutic interventions illustrated by the impairment in memory and cognitive function. Several lines of confirmation are stoutly connected with mitochondrial function perturbation as a significant causative factor in AD, while the molecular mechanisms involved in AD pathogenesis are still poorly understood. Minocycline, a well-known antibiotic, has confirmed efficacy against mitochondrial defects and oxidative stress as a neuroprotective effect. In view of this property, we examined the remedial effect of minocycline on AD. To attain insight into the molecular machinery responsible for AD pathogenesis, we preferred the UAS/GAL4 scheme for the development of AD in flies that overexpress the Aβ42 protein in the brain of Drosophila. The warning signs like the declined lifespan, locomotion deficit and memory loss, impaired mitochondrial membrane potential, and increased caspase 3 expression with mitogen-associated protein kinases linked with AD pathogenesis were examined in the existence of minocycline. Minocycline halted the Aβ42-induced symptoms including behavioral changes and altered the mitochondrial membrane potential along with apoptotic factors' protein expression (JNK/p-JNK and caspase 3). Thus, the current study could be functional to find out the role of minocycline in human Aβ42-overexpressed transgenic AD flies.

Pregnenolone Attenuates the Ischemia-Induced Neurological Deficit in the Transient Middle Cerebral Artery Occlusion Model of Rats

Neurosteroids are apparent to be connected in the cerebral ischemic injury for their potential neuroprotective effects. We previously demonstrated that progesterone induces neuroprotection via the mitochondrial cascade in the cerebral ischemic stroke of rodents. Here, we sought to investigate whether or not pregnenolone, a different neurosteroid, can protect the ischemic injury in the transient middle cerebral artery occlusion (tMCAO) rodent model. Male Wistar rats were chosen for surgery for inducing stroke using the tMCAO method. Pregnenolone (2 mg/kg b.w.) at 1 h postsurgery was administered. The neurobehavioral tests and (TTC staining) 2, 3, 5-triphenyl tetrazolium chloride staining were performed after 24 h of the surgery. The mitochondrial membrane potential and reactive oxygen species (ROS) were measured using flow cytometry. Oxygraph was used to examine mitochondrial bioenergetics. The spectrum of neurobehavioral tests and 2, 3, 5-triphenyltetrazolium chloride staining showed that pregnenolone enhanced neurological recovery. Pregnenolone therapy after a stroke lowered mitochondrial ROS following ischemia. Our data demonstrated that pregnenolone was not able to inhibit mitochondrial permeability transition pores. There was no effect on mitochondrial bioenergetics such as oxygen consumption and respiratory coupling. Overall, the findings demonstrated that pregnenolone reduced the neurological impairments via reducing mitochondria ROS but not through the inhibition of the mitochondria permeability transition pore (mtPTP).