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Song X, She S, Xin M, Chen L, Li Y, Heyden YV, Rogers KM, Chen L. Detection of adulteration in Chinese monofloral honey using 1H nuclear magnetic resonance and chemometrics. J Food Compost Anal 2020. [DOI: 10.1016/j.jfca.2019.103390] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Liu Z, Yuan Y, Xie T, Zhang Y, Shao S, Nie J, Xia W, Rogers KM, Zhang W. Long-Term Agricultural Effects on the Authentication Accuracy of Organic, Green, and Conventional Rice Using Isotopic and Elemental Chemometric Analyses. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:1213-1225. [PMID: 31903748 DOI: 10.1021/acs.jafc.9b06847] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Organically farmed rice is believed to be healthier, safer, and eco-friendlier than its conventionally farmed counterparts and sells for a premium price in global markets. Deliberate mislabeling of organic rice has become a critical consumer concern in China and elsewhere, and there is an increased risk of buying fraudulent organic rice in the market place. In this study, stable isotopic and multielemental analysis combined with chemometrics was used to differentiate organically farmed rice from green and conventional rice in a 4-year experimental field trial from 2014 to 2017. A total of 108 rice samples and their associated soils were collected during the study from three farming (fertilization) systems to investigate whether there are long-term changes in the rice farming classification accuracy from climate effects. Stable carbon and nitrogen isotopic ratios (i.e., δ13C and δ15N) and 27 elemental contents (e.g., Na, K, Ca, Fe, and Zn) of rice and soil samples were determined and then evaluated using statistical analysis [i.e., one-way analysis of variance, multivariable correlation analysis, and modeling of partial least-squares discriminant analysis]. Although δ15N values can be an effective indicator for organic rice authentication during one crop rotation, both δ13C and δ15N values of rice were easily affected by rice cultivar and interannual soil fertilization and localized agroclimatic variations. These two isotopes were not able to separate organic rice from green and conventional rice accurately. Elemental contents of green and conventional rice (especially K and Ca) were found at higher levels due to the abundant application of synthetic fertilizers (e.g., KNO3, KH2PO4, and CaHPO4), unlike organically farmed rice, which primarily used animal manure and composts. Partial least-squares discriminant analysis modeling combined isotopic and elemental signatures to correctly differentiate organic rice from green and conventional counterparts, with an accuracy up to 100% over the 4-year study. Therefore, this multi-isotope and -element strategy proposes a more rigorous, alternative tool to combat fraudulent mislabeling of organic rice, increasing the trust of organically labeled rice products and supporting the integrity of the organic sector worldwide.
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Deng X, Liu Z, Zhan Y, Ni K, Zhang Y, Ma W, Shao S, Lv X, Yuan Y, Rogers KM. Predictive geographical authentication of green tea with protected designation of origin using a random forest model. Food Control 2020. [DOI: 10.1016/j.foodcont.2019.106807] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Zhao S, Zhao Y, Rogers KM, Chen G, Chen A, Yang S. Application of multi-element (C, N, H, O) stable isotope ratio analysis for the traceability of milk samples from China. Food Chem 2019; 310:125826. [PMID: 31767489 DOI: 10.1016/j.foodchem.2019.125826] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 10/28/2019] [Accepted: 10/28/2019] [Indexed: 01/25/2023]
Abstract
Cow milk samples from various provinces in China were collected, and the effects of lactation stage, sampling time, and geographic origin on the samples were studied by elemental analysis-isotope ratio mass spectrometry (EA-IRMS). Traceability accuracy was determined using δ13C, δ15N, δ2H and δ18O values to specifically assign geographic origin. Stable isotope ratios of C, N, H and O were not significantly different among three lactation stages; however the δ13C, δ15N, and δ18O values of milk were influenced by sampling time. Furthermore, there were highly significant regional differences in the mean δ13C and δ15N values of milk. In summary, the lactation stage had no effect on the traceability of milk, whereas sampling time and geographic origin did affect milk traceability. Different geographic locations with a separation distance greater than 0.7 km can be distinguished using multi-element (C, N, H, O) stable isotope ratio analysis.
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Wang X, Rogers KM, Li Y, Yang S, Chen L, Zhou J. Untargeted and Targeted Discrimination of Honey Collected by Apis cerana and Apis mellifera Based on Volatiles Using HS-GC-IMS and HS-SPME-GC-MS. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2019; 67:12144-12152. [PMID: 31587558 DOI: 10.1021/acs.jafc.9b04438] [Citation(s) in RCA: 84] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Fraudulent acts regarding honey authenticity that use Apis mellifera honey as a substitute for Apis cerana honey have garnered considerable concern in China and triggered a trust crisis from consumers. In this study, untargeted metabolomics analysis was carried out based on volatile fractions in honey from A. cerana and A. mellifera using headspace gas chromatography-ion mobility spectrometry (HS-GC-IMS). Honey from A. cerana and A. mellifera was discriminated by HS-GC-IMS profiling, principal component analysis, and orthogonal partial least-squares discrimination analysis. Tentative markers were identified from p-values and the variable importance in projection analysis and confirmed using the retention index, mass fragments, and reference standards by gas chromatography-mass spectrometry (GC-MS). A targeted method was established using the headspace solid phase coupled with microextraction GC-MS (HS-SPME-GC-MS) to quantitate the markers. The results demonstrated that the developed untargeted and targeted metabolomics approach performed well when discriminating honey from A. cerana and A. mellifera.
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Wu H, Tian L, Chen B, Jin B, Tian B, Xie L, Rogers KM, Lin G. Verification of imported red wine origin into China using multi isotope and elemental analyses. Food Chem 2019; 301:125137. [PMID: 31362191 DOI: 10.1016/j.foodchem.2019.125137] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 07/04/2019] [Accepted: 07/05/2019] [Indexed: 12/20/2022]
Abstract
Multi-isotope and multi-elemental analyses were performed on 600 red wine samples imported into China from 7 different countries and compared with Chinese wine. Carbon and oxygen isotopes and 16 elements were used to determine origin traceability. Our goal was to build a classification tool using data modeling that can verify the geographic origin of wines imported into China. Multivariate analyses of the isotopic and elemental data revealed that it is possible to determine the geographical origin for most imported wines with a high level of confidence (>90%). The results show that Artificial Neural Network method had a high discrimination accuracy and is more suitable than Discrimination Analysis and Random Forest methods when it comes to classifying wine origin on a global scale. In conclusion, stable isotope and trace element analyses followed by multivariate processing of the data is a fast and efficient technique suitable for global wine traceability.
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Liu Z, Yuan Y, Zhang Y, Shi Y, Hu G, Zhu J, Rogers KM. Geographical traceability of Chinese green tea using stable isotope and multi-element chemometrics. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2019; 33:778-788. [PMID: 30716180 DOI: 10.1002/rcm.8405] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2018] [Revised: 01/26/2019] [Accepted: 01/28/2019] [Indexed: 06/09/2023]
Abstract
RATIONALE Deliberate and fraudulent origin mislabeling of Chinese green tea motivated by large price differences often brings significant food safety risks and damages consumer trust. Currently, there is no reliable method to verify the origin of green tea produced in China. Stable isotope and multi-element analyses combined with statistical models are widely acknowledged as useful traceability techniques for many agro-products, and could be developed to confirm the geographical origin of Chinese green tea and, more importantly, combat illegal green tea mislabeling and fraud. METHODS An analytical strategy combining elemental analyzer/isotope ratio mass spectrometry (EA/IRMS) and inductively plasma coupled mass spectrometry (ICP-MS) with chemometrics tools was used to confirm the origin of green tea grown in the main tea production provinces around China. Stable C, N, H, O isotope ratios and twenty elements were measured to build mathematical discriminant models using unsupervised principal component analysis (PCA) and supervised linear discriminant analysis (LDA). Two main problems: (i) tracing the origin of Chinese green tea from different tea growing provinces (Zhejiang, Shandong, and other provinces); (ii) authentication of high-value Westlake Longjing tea from the Westlake region and surrounding areas in Zhejiang province, were investigated and assessed. RESULTS The results demonstrated that PCA and follow-up LDA based on stable isotope and multi-element signatures can verify the geographical origin of Chinese green tea from different provinces, and even localized zones in the same province could be distinguishable, with discrimination accuracies higher than 92.3% and 87.8%, respectively. CONCLUSIONS Geochemical fingerprinting techniques coupled with chemometric tools offer an accurate and effective verification method for the geographical origin of Chinese green tea, providing a promising tool to combat fraudulent mislabeling of high-value green tea.
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Zhao S, Zhao Y, Rogers KM, Chen A, Zhang T, Yang S. Two new defatted beef reference materials, CAAS-1801 and CAAS-1802, for carbon and nitrogen stable isotope ratio measurements. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2019; 33:803-810. [PMID: 30739352 DOI: 10.1002/rcm.8411] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2018] [Revised: 01/31/2019] [Accepted: 02/04/2019] [Indexed: 06/09/2023]
Abstract
RATIONALE Isotope reference materials are essential to enable reliable and comparable isotope data across multiple laboratories. Although many reference materials already exist, the best reference materials should mimic the unknown samples, so new reference materials continue to evolve with the development of isotope research in new product areas. METHODS Two defatted beef reference materials, CAAS-1801 and CAAS-1802, with substantially different δ13 C values (due to difference in dietary intake), have been prepared as reference materials for stable C and N isotope analysis of meat tissue. Homogeneity, and short- and long-term stability tests of these reference materials have been performed. The δ13 C and δ15 N values of both materials were measured for two-point isotopic normalization against international reference materials by elemental analyzer/isotope ratio mass spectrometry (EA/IRMS). A total of nine international laboratories were selected for the joint evaluation. Cochran statistical analysis yielded the values reported here. RESULTS The defatted beef reference material CAAS-1801 from Heilongjiang province has a δ13 C value of -13.58 ± 0.56‰ relative to VPDB and a δ15 N value of 4.23 ± 0.56‰ relative to N2 in air. The defatted beef reference material CAAS-1802 from Sichuan province has a δ13 C value of -25.03 ± 0.45‰ and a δ15 N value of 4.36 ± 0.69‰. CONCLUSIONS The two defatted beef reference materials were found to be isotopically stable across a range of ambient temperatures, and to have low volatility and toxicity, which enables them to be useful as stable isotope reference materials in the field of authentication and traceability of meat.
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Liu Z, Zhang Y, Zhang Y, Yang G, Shao S, Nie J, Yuan Y, Rogers KM. Influence of leaf age, species and soil depth on the authenticity and geographical origin assignment of green tea. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2019; 33:625-634. [PMID: 30667552 DOI: 10.1002/rcm.8387] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Revised: 01/03/2019] [Accepted: 01/13/2019] [Indexed: 06/09/2023]
Abstract
RATIONALE Stable isotope fractionation occurring during leaf growth provides internal characteristics for identifying the geographical origin, traceability and authentication of tea. Studying the influence of leaf age, species and the relationship with the cultivated soil may reveal previously undocumented stable isotope fractionation mechanisms, and provide a deeper understanding of the physiological isotopic effects on the tractability and authentication accuracy of green tea to combat mislabeling and fraudulent conduct. METHODS A total of 36 pairs of young (one bud with one leaf) and mature growth (older leaf) samples from two species of Longjing tea (Longjing #43 and Colonial cultivar) and corresponding cultivation soil samples from two different depth layers (0-20 cm and 20-40 cm) were collected in Westlake district, Hangzhou, Zhejiang province, China. Four stable isotope ratios (δ13 C, δ15 N, δ2 H, and δ18 O values) were measured using an elemental analyzer coupled with an isotope ratio spectrometer. Linear correlation and one-way analysis of variance (ANOVA) statistical analyses were performed to investigate isotopic fractionation mechanisms during plant growth, and reflect the dynamic physiological processes from soil to leaf. RESULTS The carbon and nitrogen isotope ratios (δ13 C and δ15 N values) reflected the absorption, migration and fractionation of carbon dioxide and nitrogenous nutrients during photosynthesis, nutrient uptake, nitrogen fixation and leaf respiration. The water isotope ratios (δ2 H and δ18 O values) reflected the use and fractionation of water by tea plants at different growth stages. CONCLUSIONS Considerable differences were found for hydrogen and oxygen isotope ratios according to leaf age, revealing complex isotopic fractionation mechanisms and possible interference factors. Leaf maturity effects should be considered, as they will influence the precision and accuracy of models when assigning the geographical origin, traceability and authentication of tea.
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Meng J, Liu Z, Gou CL, Rogers KM, Yu WJ, Zhang SS, Yuan YW, Zhang L. Geographical origin of Chinese wolfberry (goji) determined by carbon isotope analysis of specific volatile compounds. J Chromatogr B Analyt Technol Biomed Life Sci 2019; 1105:104-112. [DOI: 10.1016/j.jchromb.2018.12.011] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 11/28/2018] [Accepted: 12/09/2018] [Indexed: 12/22/2022]
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Yuan Y, Zhang W, Zhang Y, Liu Z, Shao S, Zhou L, Rogers KM. Differentiating Organically Farmed Rice from Conventional and Green Rice Harvested from an Experimental Field Trial Using Stable Isotopes and Multi-Element Chemometrics. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2018; 66:2607-2615. [PMID: 29419296 DOI: 10.1021/acs.jafc.7b05422] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Chemometric methods using stable isotopes and elemental fingerprinting were used to characterize organically grown rice from green and conventionally grown rice in experimental field trials in China. Carbon, nitrogen, hydrogen, and oxygen stable isotopes as well as 26 other elements were determined. Organic rice was found to be more depleted in 13C than green or conventionally grown rice because of the uptake of enriched 13C from carbon dioxide and methane respiring bacteria and more enriched in 15N because of the volatilization of the nitrogen from the urea and ammonium of the animal manures used to manufacture the organic composts. Chemometrics (principal-component analysis and linear-discriminant analysis) were used to separate the three farming methods and provided a promising scientific tool to authenticate the farming methods of different rice cultivars fertilized with animal manures, green composts, and synthetic fertilizers in China or elsewhere.
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Spiteri M, Rogers KM, Jamin E, Thomas F, Guyader S, Lees M, Rutledge DN. Combination of 1H NMR and chemometrics to discriminate manuka honey from other floral honey types from Oceania. Food Chem 2017; 217:766-772. [DOI: 10.1016/j.foodchem.2016.09.027] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Revised: 05/30/2016] [Accepted: 09/05/2016] [Indexed: 11/25/2022]
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Yuan Y, Hu G, Chen T, Zhao M, Zhang Y, Li Y, Xu X, Shao S, Zhu J, Wang Q, Rogers KM. Improved Discrimination for Brassica Vegetables Treated with Agricultural Fertilizers Using a Combined Chemometric Approach. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2016; 64:5633-5643. [PMID: 27355562 DOI: 10.1021/acs.jafc.6b00453] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Multielement and stable isotope (δ(13)C, δ(15)N, δ(2)H, δ(18)O, (207)Pb/(206)Pb, and (208)Pb/(206)Pb) analyses were combined to provide a new chemometric approach to improve the discrimination between organic and conventional Brassica vegetable production. Different combinations of organic and conventional fertilizer treatments were used to demonstrate this authentication approach using Brassica chinensis planted in experimental test pots. Stable isotope analyses (δ(15)N and δ(13)C) of B. chinensis using elemental analyzer-isotope ratio mass spectrometry easily distinguished organic and chemical fertilizer treatments. However, for low-level application fertilizer treatments, this dual isotope approach became indistinguishable over time. Using a chemometric approach (combined isotope and elemental approach), organic and chemical fertilizer mixes and low-level applications of synthetic and organic fertilizers were detectable in B. chinensis and their associated soils, improving the detection limit beyond the capacity of individual isotopes or elemental characterization. LDA shows strong promise as an improved method to discriminate genuine organic Brassica vegetables from produce treated with chemical fertilizers and could be used as a robust test for organic produce authentication.
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Rogers KM, van Ruth S, Alewijn M, Philips A, Rogers P. Verification of Egg Farming Systems from The Netherlands and New Zealand Using Stable Isotopes. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015; 63:8372-8380. [PMID: 26343509 DOI: 10.1021/acs.jafc.5b01975] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Stable isotopes were used to develop authentication criteria of eggs laid under cage, barn, free range, and organic farming regimens from The Netherlands and New Zealand. A training set of commercial poultry feeds and egg albumen from 49 poultry farms across The Netherlands was used to determine the isotopic variability of organic and conventional feeds and to assess trophic effects of these corresponding feeds and barn, free range, and organic farming regimens on corresponding egg albumen. A further 52 brands of New Zealand eggs were sampled from supermarket shelves in 2008 (18), 2010 (30), and 2014 (4) to characterize and monitor changes in caged, barn, free range, and organic egg farming regimens. Stable carbon (δ(13)C) and nitrogen (δ(15)N) isotopes of 49 commercial poultry feeds and their corresponding egg albumens reveals that Dutch poultry are fed exclusively on a plant-based feed and that it is possible to discriminate between conventional and organic egg farming regimens in The Netherlands. Similarly, it is possible to discriminate between New Zealand organic and conventional egg farming regimens, although in the initial screening in 2008, results showed that some organic eggs had isotope values similar to those of conventional eggs, suggesting hens were not exclusively receiving an organic diet. Dutch and New Zealand egg regimens were shown to have a low isotopic correlation between both countries, because of different poultry feed compositions. In New Zealand, both conventional and organic egg whites have higher δ(15)N values than corresponding Dutch egg whites, due to the use of fishmeal or meat and bone meal (MBM), which is banned in European countries. This study suggests that stable isotopes (specifically nitrogen) show particular promise as a screening and authentication tool for organically farmed eggs. Criteria to assess truthfulness in labeling of organic eggs were developed, and we propose that Dutch organic egg whites should have a minimum δ(15)N value of 4.8‰ to account for an organic plant derived diet. Monitoring of New Zealand egg isotopes over the past 7 years suggests that organic eggs should have a minimum δ(15)N value of 6.0‰, and eggs falling below this value should be investigated further by certification authorities.
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Rogers KM, Sim M, Stewart S, Phillips A, Cooper J, Douance C, Pyne R, Rogers P. Investigating C-4 sugar contamination of manuka honey and other New Zealand honey varieties using carbon isotopes. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:2605-2614. [PMID: 24568639 DOI: 10.1021/jf404766f] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Carbon isotopes (δ(13)C honey and δ(13)C protein) and apparent C-4 sugar contents of 1023 New Zealand honeys from 15 different floral types were analyzed to investigate which New Zealand honey is prone to failing the AOAC 998.12 C-4 sugar test and evaluate the occurrence of false-positive results. Of the 333 honey samples that exceeded the 7% C-4 sugar threshold, 324 samples of these were New Zealand manuka honey (Leptospermum scoparium, 97.2% of all fails found in the study). Three monofloral honeys (ling, kamahi, and tawari) had nine samples (2.8% of all fails found in the study) with apparent C-4 sugars exceeding 7%. All other floral types analyzed did not display C-4 sugar fails. False-positive results were found to occur for higher activity New Zealand manuka honey with a methylglyoxal content >250 mg/kg or a nonperoxide activity >10+, and for some ling, kamahi and tawari honeys. Recommendations for future interpretation of the AOAC 998.12 C-4 sugar method are proposed.
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Rogers KM, Grainger M, Manley-Harris M. The unique manuka effect: why New Zealand manuka honey fails the AOAC 998.12 C-4 sugar method. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:2615-2622. [PMID: 24446986 DOI: 10.1021/jf404767b] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Conversion of dihydroxyacteone (DHA) to methylglyoxal (MGO) has been shown to be the key mechanism for the growth in "apparent" C-4 sugar content in nonperoxide activity (NPA) manuka honey. This reaction is enhanced by heating and storage time and is demonstrated for the first time in clover honey adulterated with DHA purchased from a chemical supplier and in manuka honey containing naturally occurring DHA and MGO. After heating at 37 °C for 83 days, pure clover honey with no added DHA has the same apparent C-4 sugar content as at t = 0 days. The same clover honey adulterated with synthetic DHA added at t = 0 days and heated at 37 °C over the same time scale shows a change in apparent C-4 sugars from 2.8 to 5.0%. Four NPA manuka honeys heated over longer periods show an increase in apparent C-4 sugars of up to 280% after 241 days. This study strongly suggests that a protein fractionation effect occurs in the conversion of DHA to MGO in higher NPA manuka honey, rendering the remaining δ(13)C protein value more negative and falsely indicating C-4 sugar addition when using the AOAC 998.12 method.
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Simister R, Taylor MW, Rogers KM, Schupp PJ, Deines P. Temporal molecular and isotopic analysis of active bacterial communities in two New Zealand sponges. FEMS Microbiol Ecol 2013; 85:195-205. [PMID: 23488722 DOI: 10.1111/1574-6941.12109] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2012] [Revised: 02/25/2013] [Accepted: 03/06/2013] [Indexed: 11/29/2022] Open
Abstract
The characterization of changes in microbial communities is an essential step towards a better understanding of host-microbe associations. It is well established that sponges (phylum Porifera) harbour a diverse and abundant microbial community, but it is not known whether these microbial communities change over time. Here, we followed two sponge species (Ancorina alata and Tethya stolonifera) over a 2-year sampling period using RNA (16S rRNA)-based amplicon pyrosequencing and bulk stable isotope analysis (δ(13) C and δ(15)N). A total of 4468 unique operational taxonomic units (OTUs) was identified, which were affiliated with 26 bacterial phyla. Bacterial communities of both sponge species were remarkably stable throughout the monitoring period, driven by a small number of OTUs that dominated their respective communities. Variability of sponge-associated bacterial communities was driven by OTUs that were low in abundance or transient over time. Stable isotope analysis provided evidence of both bacteria- and host-derived nutrients and their variability throughout the season. While δ(15) N values were similar, significant differences were found in δ(13) C of sponge tissue, indicative of a varying reliance on particulate organic matter as a carbon source. Further temporal studies, such as those undertaken here, will be highly valuable to identify which members of a sponge bacterial community are truly symbiotic in nature.
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Barr NG, Dudley BD, Rogers KM, Cornelisen CD. Broad-scale patterns of tissue-δ15N and tissue-N indices in frondose Ulva spp.; developing a national baseline indicator of nitrogen-loading for coastal New Zealand. MARINE POLLUTION BULLETIN 2013; 67:203-216. [PMID: 23260648 DOI: 10.1016/j.marpolbul.2012.11.033] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2012] [Revised: 11/12/2012] [Accepted: 11/18/2012] [Indexed: 06/01/2023]
Abstract
A survey of tissue-δ(15)N and tissue-N values in the green macroalga, Ulva, was conducted around the coast of New Zealand to determine if these indices could be used as indicators of anthropogenic nutrient loading in coastal waters. In addition, data from four case studies showed temporal and spatial responses of tissue-δ(15)N and tissue-N in Ulva to significant terrestrial nutrient inputs. Tissue-δ(15)N in Ulva from 'natural' exposed coastal sites showed a relatively narrow baseline range of values (6.6±0.1-8.8±0.1‰) in both summer and winter that was consistent throughout New Zealand. Departures in Ulva tissue-δ(15)N ratios outside this range, particularly when coupled with high (>3.1%) tissue-N values, indicate significant contributions of terrestrially-derived nitrogen to coastal seawater. We note that tissue-N content is also affected by exposure, light and season; however provided such factors are taken into account Ulva can be a cost-effective indicator of relative changes in both source and amount of nitrogen-loading.
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Rogers KM, Nicolini E, Gauthier V. Identifying source and formation altitudes of nitrates in drinking water from Réunion Island, France, using a multi-isotopic approach. JOURNAL OF CONTAMINANT HYDROLOGY 2012; 138-139:93-103. [PMID: 22858670 DOI: 10.1016/j.jconhyd.2012.07.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2009] [Revised: 07/05/2012] [Accepted: 07/06/2012] [Indexed: 06/01/2023]
Abstract
Nitrate concentrations, water isotopes (δ(2)H and δ(18)O(water)) and associated nitrate isotopes (δ(15)N(nitrate) and δ(18)O(nitrate)) from 10 drinking water wells, 5 fresh water springs and the discharge from 3 wastewater treatment stations in Réunion Island, located in the Indian Ocean, were analysed. We used a multi isotopic approach to investigate the extent of nitrate contamination, nitrate formation altitude and source of nitrates in Réunion Island's principal aquifer. Water from these study sites contained between 0.1 and 85.3 mg/L nitrate. δ(15)N(nitrate) values between +6 and +14‰ suggested the main sources of contamination were animal and/or human waste, rather than inorganic (synthetic) fertilisers, infiltrating through the subsurface into the saturated zone, due to rainfall leaching of the unsaturated zone at various altitudes of precipitation. Based on δ(15)N(nitrate) values alone, it was not possible to distinguish between animal and human activities responsible for the contamination of each specific catchment. However, using a multi isotope approach (δ(18)O(water) and δ(15)N(nitrate)), it was possible to relate the average altitude of rainfall infiltration (δ(18)O(water)) associated with the nitrate contamination (δ(18)O(nitrate)). This relationship between land use, rainfall recharge altitude and isotopic composition (δ(15)N(nitrate) and δ(18)O(water)) discriminated between the influences of human waste at lower (below 600 m elevation) or animal derived contamination (at elevations between 600 and 1300 m). By further comparing the theoretical altitude of nitrate formation calculated by the δ(18)O(nitrate), it was possible to determine that only 5 out of 15 fresh water wells and springs followed the conservative nitrate formation mechanism of 2/3δ(18)O(water)+1/3δ(18)O(air), to give nitrate formation altitudes which corresponded to land use activities.
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Rogers KM, Wassenaar LI, Soto DX, Bartle JA. A feather-precipitation hydrogen isoscape model for New Zealand: implications for eco-forensics. Ecosphere 2012. [DOI: 10.1890/es11-00343.1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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Gomez B, Baisden WT, Rogers KM. Variable composition of particle-bound organic carbon in steepland river systems. ACTA ACUST UNITED AC 2010. [DOI: 10.1029/2010jf001713] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Rogers KM, Somerton K, Rogers P, Cox J. Eliminating false positive C4 sugar tests on New Zealand Manuka honey. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2010; 24:2370-2374. [PMID: 20635333 DOI: 10.1002/rcm.4642] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Carbon isotope analyses (delta(13)C) of some New Zealand Manuka honeys show that they often fail the internationally recognised Association of Official Analytical Chemists sugar test (AOAC method 998.12) which detects added C(4) sugar, although these honeys are from unadulterated sources. Failure of these high value products is detrimental to the New Zealand honey industry, not only in lost export revenue, but also in brand and market reputation damage. The standard AOAC test compares the carbon isotope value of the whole honey and corresponding protein isolated from the same honey. Differences between whole honey and protein delta(13)C values should not be greater than +1.0 per thousand, as it indicates the possibility of adulteration with syrups or sugars from C(4) plants such as high fructose corn syrup or cane sugar.We have determined that during the standard AOAC method, pollen and other insoluble components are isolated with the flocculated protein. These non-protein components have isotope values which are considerably different from those of the pure protein, and can shift the apparent delta(13)C value of protein further away from the delta(13)C value of the whole honey, giving a false positive result for added C(4) sugar. To eliminate a false positive C(4) sugar test for Manuka honey, prior removal of pollen and other insoluble material from the honey is necessary to ensure that only the pure protein is isolated. This will enable a true comparison between whole honey and protein delta(13)C isotopes. Furthermore, we strongly suggest this modification to the AOAC method be universally adopted for all honey C(4) sugar tests.
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Rogers KM. Stable isotopes as a tool to differentiate eggs laid by caged, barn, free range, and organic hens. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2009; 57:4236-4242. [PMID: 19358533 DOI: 10.1021/jf803760s] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Stable carbon and nitrogen isotope values of whole yolk, delipidized yolk, albumen, and egg membrane were analyzed from 18 different brands of chicken eggs laid under caged, barn, free range, and organic farming regimes. In general, free range and organic egg components showed enrichment of (15)N values up to 4‰ relative to caged and barn laid eggs, suggesting a higher animal protein (trophic) contribution to the chicken's diet than pure plant-based foods and/or that the feed was organically manufactured. One sample of free range and two samples of organic eggs had δ(15)N values within the range of caged or barn laid eggs, suggesting either that these eggs were mislabeled (the hens were raised under "battery" or "barn" conditions, and not permitted to forage outside) or that there was insufficient animal protein gained by foraging to shift the δ(15)N values of their primary food source. δ(13)C values of potential food sources are discussed with respect to dietary intake and contribution to the isotopic signature of the eggs to determine mixing of C(3) and C(4) diets, although they did not elucidate laying regimen. The study finds that stable nitrogen isotope analysis of egg components is potentially a useful technique to unravel dietary differences between caged or barn hens and free range hens (both conventional and organic) and could be further developed as an authentication tool in the egg industry.
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Rogers KM, Deatheridge M, Breshears MA, Chapman S, Black D, Ritchey JW, Payton M, Eberle R. Type I IFN response to Papiine herpesvirus 2 (Herpesvirus papio 2; HVP2) determines neuropathogenicity in mice. Virology 2009; 386:280-9. [PMID: 19215952 DOI: 10.1016/j.virol.2009.01.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2008] [Revised: 10/22/2008] [Accepted: 01/02/2009] [Indexed: 11/18/2022]
Abstract
Isolates of baboon alpha-herpesvirus Papiine herpesvirus 2 (HVP2) exhibit one of two distinct phenotypes in mice: extremely neurovirulent or apathogenic. Previous studies implicated the type I interferon (IFN) response as being a major factor in controlling infection by apathogenic isolates. To further investigate the possibility that the host IFN-beta response underlies the pathogenicity of the two HVP2 subtypes, the susceptibility of mice lacking the IFN-beta receptor (IFNAR(-/-)) to infection was examined. Apathogenic isolates of HVP2 (HVP2ap) replicated in IFNAR(-/-) primary mouse dermal fibroblast (PMDF) cultures as well as neurovirulent (HVP2nv) isolates. IFNAR(-/-) mice were also susceptible to lethal infection by HVP2ap isolates. Unlike Balb/c or parental 129 mice, LD(50) and ID(50) values for HVP2ap were the same in IFNAR(-/-) mice indicating that in these mice infection always progressed to death. HVP2ap replicated in the skin at the site of inoculation and invaded dorsal root ganglia as efficiently as HVP2nv in IFNAR(-/-) mice. Since the virion host shutoff (vhs) protein encoded by the UL41 gene of herpes simplex virus has been implicated in circumventing the host IFN-beta response and the phenotype of UL41 deletion mutants of HSV is very similar to that of HVP2ap isolates, the UL41 gene was deleted from HVP2nv (Delta 41) and replaced with the UL41 ORF from HVP2ap (Delta 41C). Like the parental HVP2nv virus, the Delta 41C recombinant replicated efficiently in Balb/c PMDFs and did not induce a strong IFN-beta response. The neuropathogenicity of the Delta 41C recombinant was also the same as the parental HVP2nv virus in Balb/c mice, indicating that the vhs protein does not underlie the different neuropathogenic phenotype of HVP2ap and HVP2nv. In contrast, the Delta 41 deletion virus induced a strong IFN-beta response but was still able to undergo multiple rounds of replication in PMDF cultures, albeit at a slower pace than the parental HVP2nv. This was reflected in vivo as the Delta 41 mutant had an LD(50) equivalent to that of the parental HVP2nv virus although the time to death was longer. These results indicate that while the vhs protein is involved in preventing and/or suppressing an IFN-beta response, it is not responsible for the ability of HVP2nv to overcome IFN-beta induced resistance of uninfected cells and does not underlie the divergent pathogenicity of the two HVP2 subtypes in mice.
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Rogers KM. Nitrogen isotopes as a screening tool to determine the growing regimen of some organic and nonorganic supermarket produce from New Zealand. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2008; 56:4078-4083. [PMID: 18489112 DOI: 10.1021/jf800797w] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
An isotopic study was performed on nine varieties of organically and conventionally grown vegetables from an organic food market and a chain supermarket in New Zealand. The main aim of the study was to assess the applicability of stable nitrogen isotopes as a screening tool to differentiate between organic and conventional growing conditions of various vegetable types sampled directly off supermarket shelves. This could be further used as the basis of a simple authentication tool to detect noncompliant organic farming practices and false labeling of organic produce. In this study, nitrogen isotopes are found to be an excellent way of identifying faster growing organic vegetables (maturity time to harvest of <80 days), as these vegetables tend to be significantly more enriched in (15)N than conventionally grown vegetables and natural soil N. For slower growing organic produce (maturity time to harvest of >80 days), more information would be required to understand isotopic variations and fractionation effects between vegetables and soil over time as the technique does not discriminate organic from conventional regimens for these vegetables with as much certainty.
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