Metagenomic insights into bioaugmentation and biovalorization of oily industrial wastes by lipolytic oleaginous yeast Yarrowia lipolytica during successive batch fermentation

The lipolytic oleaginous yeast Yarrowia lipolytica was used in the bioaugmentation and biovalorization of oily industrial wastes during successive-batch fermentation. Five cycles of nonsterile successive batch fermentation with 70% medium replacement achieved the highest oil removal of 68.1 ± 5.60% and produced biomass and lipid yields of 0.213 ± 0.07 g/g-COD and 146.2 ± 46.5 mg/g-COD, respectively. The cell-bound lipase activity observed in the system was 170.74 ± 32 U/L. The auto-flocculation efficiency of the biomass was >90% within 60 Min. The microbial community changes between Y. lipolytica and indigenous microorganisms were monitored by metagenomic next-generation sequencing of internal transcribed spacer rDNA regions for yeasts and 16S rRNA gene for bacteria. Ylipolytica lipolytica was retained in the consortium together with other indigenous strains until the fifth cycle. Other minor oleaginous yeasts such as Kodamaea ohmeri and Candida tropicalis as well as polyhydroxyalkanoate-accumulating bacteria were found and are likely to have participated in lipid production. This study has shown the robustness of Y. lipolytica in nonsterile successive batch fermentation and its use could contribute greatly to the practical valorization of industrial wastes for lipids and lipases.

Feasibility and applicability of the scaling-up of bio-electro-Fenton system for textile wastewater treatment

Textile wastewater entering natural water bodies could cause serious environment and health issues. Bio-electro-Fenton (BEF) as an efficient and energy saving wastewater treatment technology has recently attracted widespread attention. So far, there is no research available on the scaling-up of BEF process. In this work, an innovative 20 L up-scaled BEF system was constructed for the treatment of methylene blue (MB) containing wastewater. The system was first tested in batch mode. The results showed that the system performance was majorly related to the operating parameters including initial MB concentration, catholyte pH and concentration, cathodic aeration rate, Fe²⁺ dosage, and applied voltage. At the optimal condition, 20 mg L^-1 of MB was efficiently removed following the apparent first order kinetics. The corresponding rate constants for the decolorization and mineralization were 0.68 and 0.20 h^-1, respectively. Furthermore, MB decolorization efficiency of 99% and mineralization efficiency of 74% were observed when the hydraulic retention time was 28 h in continuous mode. This work demonstrates the scaling-up potential of BEF for recalcitrant wastewater treatment.

Microbial community response to ammonia levels in hydrogen assisted biogas production and upgrading process

Biological conversion of carbon dioxide into methane using hydrogen derived from surplus renewable energy (wind power) as reducing power is a novel technology for biogas upgrading. High ammonia concentrations are toxic to the biogas upgrading process, however the mechanisms behind the inhibition as well as the microbial stress response in such unique upgrading system have never been reported. Thus, the effect of high ammonia concentrations on microbial community during hydrogen induced biogas upgrading process was evaluated here. The results showed that a change from aceticlastic pathway to hydrogenotrophic pathway occurred when ammonia level increased (1-7 g NH₄⁺-N L^-1). In addition, the bacteria, potentially syntrophic associated with hydrogenotrophic methanogens, were enriched at high ammonia concentrations. Moreover, growth of some bacteria (e.g., Halanaerobiaceaeen and Leucobacter) which were vulnerable to ammonia toxicity was restored upon hydrogen injection. Furthermore, hydrogen injection under high ammonia concentration could promote growth of some hydrolytic and fermentative bacteria.

New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters

BACKGROUND

Microorganisms in biogas reactors are essential for degradation of organic matter and methane production. However, a comprehensive genome-centric comparison, including relevant metadata for each sample, is still needed to identify the globally distributed biogas community members and serve as a reliable repository.

RESULTS

Here, 134 publicly available metagenomes derived from different biogas reactors were used to recover 1635 metagenome-assembled genomes (MAGs) representing different biogas bacterial and archaeal species. All genomes were estimated to be > 50% complete and nearly half ≥ 90% complete with ≤ 5% contamination. In most samples, specialized microbial communities were established, while only a few taxa were widespread among the different reactor systems. Metabolic reconstruction of the MAGs enabled the prediction of functional traits related to biomass degradation and methane production from waste biomass. An extensive evaluation of the replication index provided an estimation of the growth dynamics for microbes involved in different steps of the food chain.

CONCLUSIONS

The outcome of this study highlights a high flexibility of the biogas microbiome, allowing it to modify its composition and to adapt to the environmental conditions, including temperatures and a wide range of substrates. Our findings enhance our mechanistic understanding of the AD microbiome and substantially extend the existing repository of genomes. The established database represents a relevant resource for future studies related to this engineered ecosystem.

Methane oxidising bacteria to upcycle effluent streams from anaerobic digestion of municipal biowaste

Conventional microbial protein production relies on the usage of pure chemicals and gases. Natural gas, which is a fossil resource, is the common input gas for bacterial protein production. Alternative sources for gas feedstock and nutrients can sufficiently decrease the operational cost and environmental impact of microbial protein production processes. In the present study, the effluents streams of municipal biowaste anaerobic digestion, were used to grow methane oxidising bacteria which can be used as protein source. Results demonstrated that a 40:60 CH₄:O₂ (v/v) gas feeding resulted in microbial biomass production of 0.95 g-DM/L by a Methylophilus dominated community. When raw biogas was used as input for methane corresponding to the same initial methane partial pressure as before, instead of pure methane, the growth was partially hindered (0.61 g-DM/L) due to the presence of H₂S (IC₅₀: 1376 ppm). Hence, desulfurization is suggested before using biogas for microbial protein production. At semi-continuous mode, results showed that the produced biomass had relatively high protein content (>40% of dry weight) and the essential amino acids lysine, valine, leucine and histidine were detected at high levels.

Hydrogenotrophic methanogens are the key for a successful bioaugmentation to alleviate ammonia inhibition in thermophilic anaerobic digesters

Bioaugmentation to alleviate ammonia inhibition under thermophilic anaerobic digestion has never been reported, as well as the working mechanism that allows a fast and successful bioaugmentation. Thus two bioaugmentation inocula (an enriched culture, and a mixed culture composed 50/50 by Methanoculleus thermophilus and the enriched culture) on the recovery of ammonia-inhibited thermophilic continuous reactors was assessed. The results showed that bioaugmentation improved methane yield by 11-13% and decreased the volatile fatty acids (VFA) by 45-52% compared to the control reactor (abiotic augmentation). Moreover, the importance of hydrogenotrophic methanogens to a fast and successful bioaugmentation was recognized. Specifically, the instant hydrogen partial pressure reduction by the bioaugmented hydrogenotroph created thermodynamically favourable conditions for the acetate oxidation process and consequently, the catabolism of other VFA. High-throughput sequencing results strengthened this explanation by showing that the bioaugmented M. thermophilus stimulated the growth of syntrophic acetate oxidising bacterium Thermacetogenium phaeum, immediately after bioaugmentation.

Engineering Oleaginous Yeast as the Host for Fermentative Succinic Acid Production From Glucose

Oleaginous yeast Yarrowia lipolytica is a prospective host for production of succinic acid. The interruption of tricarboxylic acid cycle through succinate dehydrogenase gene (SDH) deletion was reported to result in strains incapable of glucose utilization and this ability had to be restored by chemical mutation or long adaptive laboratory evolution. In this study, a succinate producing strain of Y. lipolytica was engineered by truncating the promoter of SDH1 gene, which resulted in 77% reduction in SDH activity but did not impair the ability of the strain to grow on glucose. The flux toward succinic acid was further improved by overexpressing the genes in the glyoxylate pathway and the oxidative TCA branch, and expressing phosphoenolpyruvate carboxykinase from Actinobacillus succinogenes. A short adaptation on glucose reduced the lag phase of the strain and increased its tolerance to high glucose concentrations. The resulting strain produced 7.8 ± 0.0 g/L succinic acid with a yield of 0.105 g/g glucose in shake flasks without pH control, while mannitol (11.8 ± 0.8 g/L) was the main by-product. Further investigations showed that mannitol accumulation was caused by low pH stress and buffering the fermentation medium eliminated mannitol formation. In a fed-batch bioreactor in mineral medium at pH 5, at which point according to K_a values of succinic acid, the major fraction of product was in acidic form rather than dissociated form, the strain produced 35.3 ± 1.5 g/L succinic acid with 0.26 ± 0.00 g/g glucose yield.

Exoelectrogenic Anaerobic Granular Sludge for Simultaneous Electricity Generation and Wastewater Treatment

A thick and electroactive biofilm is the key to the successful development of microbial electrochemical systems and technologies (METs). In this study, intact anaerobic granular sludge (AGS), which is a spherical and dense microbial association, was successfully demonstrated as a novel and efficient biocatalyst in METs such as microbial fuel cells. Three different strategies were explored to shift the microbial composition of AGS from methanogenic to exoelectrogenic microbes, including varying the external resistance and organic loading and manipulating the anode potential. Among all the strategies, only with positive anode potential, AGS was successfully shifted from methanogenic to exoelectrogenic conditions, as indicated by the significantly high current response (10.32 A/m²) and 100% removal of organic carbon from wastewater. Moreover, the AGS bioanode showed no significant decrease in current generation and organic removal at pH 5, indicating good tolerance of AGS to acidic conditions. Finally, 16S rRNA sequencing revealed the enrichment of exoelectrogens and inhibition of methanogens in the microbial community of AGS after anode potential control. This study provides a proof of concept for extracting electrical energy from organic wastes by exoelectrogenic AGS along with simultaneous wastewater treatment and meanwhile opens up a new paradigm to create an efficient and cost-effective exoelectrogenic biocatalyst for boosting the industrial application of METs.

Urban biowaste valorization by coupling anaerobic digestion and single cell protein production

Resource efficient and novel practices to produce proteinaceous food and feed sources can partially alleviate the protein scarcity problem. The conversion of low-value waste streams into single cell protein (SCP) seems a potent solution. This study evaluated the possibility of urban biowaste valorization through coupling anaerobic digestion and SCP production, and feeding a methanotroph mixed-culture with raw and upgraded biogas. In respect to nitrogen supply, the mixed-culture could grow well providing nutrients by direct addition of pasteurized centrifuged-filtered digestate or by adding electrochemically extracted ammonium from the digestate. The SCP yield on methane varied from 0.59 to 0.76 g cell dry weight (CDW)/g CH₄. A high yield on methane (0.87 g CDW/g CH₄) proved that biogas is a good substitute for natural gas for scaled-up microbial protein production. In addition, the produced SCP was rich in essential amino acids, marking the produced biomass comparable with other protein sources.

Carbon dioxide anion radical as a tool to enhance lignin valorization

Lignin is particularly recalcitrant for valorization via the existing pretreatment methods due to its complex cross-linking polymeric network. The aim of this study is to develop a novel integrated pretreatment strategy to exploit the potential of lignocellulosic biomass as resource for production of biofuels and aromatic chemicals. In this regard, a novel UV/TiO₂/HCOOH reaction was proposed to systematically generate hydroxyl radical (OH) and carbon dioxide radical anion (CO₂^-) to depolymerize lignin. Usage of 2,3-dihydrobenzofuran as a simple probe molecule showed cleavage β-O-4 linkage occurred via H abstraction mechanism. The addition of methyl viologen as CO₂^- scavengers proved the presence of CO₂^- in this UV/TiO₂/HCOOH reaction. Lignin and wheat straw were used to investigate the effect of different parameters, including formic acid concentration and TiO₂ dosage, on the efficiency of the reaction. At optimized conditions, the highest phenolic concentrations attained were 173.431 and 66.802 mg/g lignin and wheat straw, respectively. A cycle test was designed with the aim to favor the complete consumption of formic acid through more pretreatment cycles for producing the highest possible Total Phenolic Compounds (TPC) in the liquid phase. After the third consecutive cycle, 103.651 ± 5.964 mg-TPC/g, was obtained. Meanwhile it was found the remaining wheat straw solid fibers used for biogas production, showed 11.0% increase biogas production and increased degradation rate compared to the untreated wheat straw.

Bioaugmentation strategy for overcoming ammonia inhibition during biomethanation of a protein-rich substrate

High ammonia levels inhibit anaerobic digestion (AD) process and bioaugmentation with ammonia tolerant methanogenic culture is proposed to alleviate ammonia inhibition. In the current study, hydrogenotrophic Methanoculleus bourgensis was bioaugmented in an ammonia-inhibited continuous reactor fed mainly with microalgae (a protein-rich biomass), at extreme ammonia levels (i.e. 11 g NH₄⁺-N L^-1). The results showed 28% increase in methane production immediately after bioaugmentation. Moreover, volatile fatty acids decreased rapidly from more than 5 g L^-1 to around 1 g L^-1, with a fast reduction in propionate concentration. High throughput 16s rRNA gene sequencing demonstrated that the bioaugmented M. bourgensis doubled its relative abundance after bioaugmentation. "Microbiological domino effect", triggered by the bioaugmented M. bourgensis establishing a newly efficient community, was proposed as the working mechanism of the successful bioaugmentation. Additionally, a strong aceticlastic methanogenesis was found at the end of the experiment evidenced by the dominant presence of Methanosarcina soligelidi and the low abundance of syntrophic acetate oxidising bacteria at the final period. Overall, for the first time, this study proved the positive effect of bioaugmentation on ammonia inhibition alleviation of the microalgae-dominating fed reactor, paving the way of efficient utilization of other protein-rich substrates in the future.

Complete genome sequence of Nitratireductor sp. strain OM-1: A lipid-producing bacterium with potential use in wastewater treatment

Reducing CO₂ emissions is necessary to alleviate rising global temperature. Renewable sources of energy are becoming an increasingly important substitute for fossil fuels. An important step in this direction is the isolation of novel, technologically relevant microorganisms. Nitratireductor sp. strain OM-1 can convert volatile short-chain fatty acids in wastewater into 2-butenoic acid and its ester and can accumulate intracellularly esterified compounds up to 50% of its dried cell weight under nitrogen-depleted conditions. It is believed that a novel fatty acid biosynthesis pathway including an esterifying enzyme is encoded in its genome. In this study, we report the whole-genome sequence (4.8 Mb) of OM-1, which comprises a chromosome (3,977,827 bp) and a megaplasmid (857,937 bp). This sequence information provides insight into the genome organization and biochemical pathways of OM-1. In addition, we identified lipid biosynthesis pathways in OM-1, paving the way to a better understanding of its biochemical characterization.

Acclimatization contributes to stable anaerobic digestion of organic fraction of municipal solid waste under extreme ammonia levels: Focusing on microbial community dynamics

The organic fraction of municipal solid waste (OFMSW) is an abundant and sustainable substrate for the anaerobic digestion (AD) process, yet ammonia released during OFMSW hydrolysis could result in suboptimal biogas production. Acclimatized ammonia tolerant microorganisms offer an efficient way to alleviate ammonia inhibition during AD. This study aimed to achieve an efficient AD of OFMSW under extreme ammonia levels and elucidate the dynamics of the acclimatized microbial community. Thus, two mesophilic continuous stirred tank reactors (CSTR), fed only with OFMSW, were successfully acclimatized up to 8.5 g NH₄⁺-N/L, and their methane yields fluctuated <10%, compared to the methane yields without ammonia addition. Microbiological analyses showed that Methanosaeta concilii and Methanosarcina soligelidi were the dominant methanogens at low and high ammonia levels, respectively. Whilst, a unique metabolic pathway shift, from aceticlastic to hydrogenotrophic methanogenesis, of M. soligelidi was identified during the acclimatization process.

Biogas upgrading and biochemical production from gas fermentation: Impact of microbial community and gas composition

The present study proposes a novel alternative method of the current biogas upgrading techniques by converting CO₂ (in the biogas) into valuable chemicals (e.g., volatile fatty acids) using H₂ as energy source and acetogenic mixed culture as biocatalyst. The influence of thermal treatment (90 °C) on the inhibition of the methanogenic archaea and enriching the acetogenic bacteria in different inocula (mesophilic and thermophilic) was initially tested. The most efficient inoculum that achieved the highest performance through the fermentation process was further used to define the optimum H₂/CO₂ gas ratio that secures maximum production yield of chemicals and maximum biogas upgrading efficiency. In addition, 16S rRNA analysis of the microbial community was conducted at the end of the experimental period to target functional microbes. The maximum biogas content (77% (v/v)) and acetate yield (72%) were achieved for 2H₂:1CO₂ ratio (v/v), with Moorella sp. 4 as the most dominant thermophilic acetogenic bacterium.

Application of nano-structured materials in anaerobic digestion: Current status and perspectives

Nanotechnology is gaining more attention in biotechnological applications as a research area with a huge potential. Nanoparticles (NPs) can influence the rate of anaerobic digestion (AD) as the nano-sized structures, with specific physicochemical properties, interact with substrate and microorganisms. The present work has classified the various types of additives used to improve the AD processes. Nanomaterials as new additives in AD process are classified into four categories: Zero-valent metallic NPs, Metal oxide NPs, Carbon based nanomaterials, and Multi-compound NPs. In the following, application of nanomaterials in AD process is reviewed and negative and positive effects of these materials on the AD process and subsequently biogas production rate are discussed. This study confirms that design and development of new nano-sized compounds can improve the performances of the AD processes.

Immobilization of Clostridium kluyveri on wheat straw to alleviate ammonia inhibition during chain elongation for n-caproate production

Biosynthesis of n-caproate from waste streams rich in acetate and ethanol through chain elongation has offered a potentially sustainable way for future production of liquid biofuels. However, most of the waste streams that fit with the purpose (e.g., digestate) are also rich in ammonium which at high concentration may cause toxic effects on the bioconversion process. This study aims to develop a robust, efficient, and cost-effective chain elongation process with high caproate productivity and tolerance to high ammonia concentration, through immobilization of Clostridium kluyveri on biomass particles as immobilization material. The threshold ammonia concentration for suspended cells cultivation was 2.1 g/L, while it was higher than 5.0 g/L for the wheat straw immobilized system. The caproate production process was dependent on the selected carriers and was performing in the order of: wheat straw > grass straw > saw dust. The biofilm immobilized on the wheat straw showed good reuse capability for caproate production under high ammonia concentration. Moreover, the lag phase for caproate production was shortened from 72 to 30 h after 8 times reuse. These results proved that caproate production and tolerance of chain elongation to ammonia toxicity could be enhanced via cell immobilization. This study offers insight into future development of efficient and cost-effective chain elongation system for production of caproate and other value-added products.

The Potential of Biogas; the Solution to Energy Storage

Energy storage will be essential for balancing the renewable energy systems of tomorrow, especially if excess electricity from wind and solar power requires immediate utilization. The use of biogas as a carbon source can generate carbon dioxide-neutral carbon-based energy carriers, such as methane or methanol. The utilization of biogas today is limited to the generation of heat/power or biomethane (first-generation upgrading); both processes disregard the potential of the coproduced carbon dioxide during the fermentation process. By using renewable energy, biogas upgrading systems can convert carbon dioxide into hydrocarbon-based high-energy-density fuels, which can replace fossil-based fuels for applications in which they are hard to decarbonize. The possibilities for the future utilization of biogas are discussed, and the terminology for "second-generation upgrading" is introduced to help research and development within this field. It is believed that second-generation upgrading of biogas will have a huge potential for dynamic energy storage.

Exploring stability indicators for efficient monitoring of anaerobic digestion of pig manure under perturbations

Monitoring of anaerobic digestion process is essential for achieving efficient and stable performance, thus requiring identification of effective stability indicators. The response of two experimental, continuously stirred tank reactors under mesophilic condition (fed with pig manure) was investigated to analyze the perturbation of organic and hydraulic overloading, and low-temperature shock. The pH was stably maintained in the range of 7.2-7.7, regardless of the presence of most simulated perturbation situations. Monitoring of biogas production and composition is important to reflect the current state of biogas process, but cannot predict the imbalance in the system. Accumulation of total VFAs up to 21,718 mg/L was observed under the organic overloading condition (rapid increase of the organic loading rate of pig manure from 3 g VS/L/d to 9 g VS/L/d), but not for other perturbations. The ratio of propionate to acetate and that of intermediate alkalinity to partial alkalinity are rapidly altered in response to all perturbations, indicating their potential to function as stability indicators. However, the determination of the ratio of intermediate alkalinity to partial alkalinity can be performed by simple titration methods and be easily applied to actual projects without significant investment in advanced equipment and skilled operators.

Early warning indicators for mesophilic anaerobic digestion of corn stalk: a combined experimental and simulation approach

BACKGROUND

Monitoring and providing early warning are essential operations in the anaerobic digestion (AD) process. However, there are still several challenges for identifying the early warning indicators and their thresholds. One particular challenge is that proposed strategies are only valid under certain conditions. Another is the feasibility and universality of the detailed threshold values obtained from different AD systems. In this article, we report a novel strategy for identifying early warning indicators and defining threshold values via a combined experimental and simulation approach.

RESULTS

The AD of corn stalk (CS) was conducted using mesophilic, completely stirred anaerobic reactors. Two overload modes (organic and hydraulic) and overload types (sudden and gradual) were applied in order to identify early warning indicators of the process and determine their threshold values. To verify the selection of experimental indicators, a combined experimental and simulation approach was adopted, using a modified anaerobic bioconversion mathematical model (BioModel). Results revealed that the model simulations agreed well with the experimental data. Furthermore, the ratio of intermediate alkalinity to bicarbonate alkalinity (IA/BA) and volatile fatty acids (VFAs) were selected as the most potent early warning indicators, with warning times of 7 days and 5-8 days, respectively. In addition, IA, BA, and VFA/BA were identified as potential auxiliary indicators for diagnosing imbalances in the AD system. The relative variations for indicators based on that of steady state were observed instead of the absolute threshold values, which make the early warning more feasible and universal.

CONCLUSION

The strategy of a combined approach presented that the model is promising tool for selecting and monitoring early warning indicators in various corn stalk AD scenarios. This study may offer insight into industrial application of early warning in AD system with mathematical model.

Miscanthus straw as substrate for biosuccinic acid production: Focusing on pretreatment and downstream processing

The main aim of this study was to optimize pretreatment strategies of Miscanthus × giganteus for biosuccinic acid production. A successful pretreatment with organosolv method (80% w/w of glycerol, 1.25% of H₂SO₄), prevented sugars conversion to furfurals and organic acids, and thereby resulted in high sugar recovery (glucan > 98%, xylan > 91%) and biomass delignification (60%). Pretreated biomass was subjected to hydrolysis with various cellulolytic enzyme cocktails (Viscozyme® L, Carezyme 1000L®, β-Glucanase, Cellic® CTec2, Cellic® HTec2). The most effective enzymes mixture composed of Cellic® CTec2 (10% w/w), β-Glucanase (5% w/w) and Cellic® HTec2 (1% w/w) resulted in high glucose (93.1%) and xylose (69.2%) yields after glycerol-based pretreatment. Succinic acid yield of 75-82% was obtained after hydrolysates fermentation, using Actinobacillus succinogenes 130Z. Finally a successful downstream concept for succinic acid purification was proposed. The succinic acid recovery with high purity (>98%) was developed.

Graphene based ZnO nanoparticles to depolymerize lignin-rich residues via UV/iodide process

In this work, potassium iodide (KI) and graphene oxide (GO) were utilized to promote the selectivity of photocatalytic process for alkali lignin oxidation over ZnO. Different concertation of GO was added during the microwave synthesis procedure of ZnO, and the characterization results revealed that graphene can shift the conduction band to more reducing potential, resulting to higher production of superoxide anion radicals (O₂^-) compared to OH. Response Surface Methodology revealed the most suitable interaction among loading of GO, KI and irradiation time on lignin and total phenolic compound (TPC) degradation. Specifically, the optimal conditions (i.e. maximum lignin (52%) and minimum TPC (55%) degradation) were at [KI] = 0.64 mM; GO content into ZnO 1.2 mg/mL; 240 min of irradiation time. The results showed that higher addition of graphene into structure of ZnO could preserve more phenolics from degradation due to less production of OH. Furthermore, the addition of KI at optimized conditions could enhance the selectivity of degradation of lignin and phenolics via producing I radicals and quenching the excess amount of generated OH, respectively. The lower generation of OH at optimized conditions was quantitatively confirmed by a photoluminescence simplified technique. In addition, the effect of the photocatalytic process on substrate's anaerobic degradability was examined in order to evaluate the suitability of the pretreated solution for energy recovery. Indeed, besides the higher TPC concentration, the biogas production of treated straw at optimized conditions was increased by 35% compared to the untreated sample.

Novel ecological insights and functional roles during anaerobic digestion of saccharides unveiled by genome-centric metagenomics

In typical anaerobic digestion (AD) systems, the microbial functional assertion is hampered by synchronised versatile metabolism required for heterogeneous substrates degradation. Thus, the intricate methanogenic process from organic compounds remains an enigma after decades of empirical operation. In this study, simplified AD microbial communities were obtained with substrate specifications and continuous reactor operation. Genome-centric metagenomic approach was followed to holistically investigate the metabolic pathways of the AD and the microbial synergistic networks. In total, 63 metagenome assembled genomes (MAGs) were assembled from 8 metagenomes acquired in specific methanogenic niches. The metabolic pathways were reconstructed from the annotated genes and their dynamicity under experimental conditions. The results show that the methanogenic niches nourish unique metabolism beyond current knowledge acquired from cultivation-based methods. A novel glucose mineralization model without acetate formation was proposed and asserted in a pair of syntrophs: Clostridiaceae sp. and Methanoculleus thermophilus. Moreover, the catabolic pathway was elucidated in uncharacterized syntrophic acetate oxidizers, Synergistaceae spp. A remarkable evolutionary insight is the discovery that electron transport and energy conservation mechanisms impose selective pressure on syntrophic partners. Overall, the functional roles of the individual microbes tightly rely on the catabolic pathways and cannot always be physiologically defined in accordance with conventional four-step AD concept. The substrate-specific systems provided a traceable microbial community to dissecting the AD process. The genome-centric metagenomics successfully constructed genomes of microbes that have not been previously isolated and illustrated metabolic pathways that beyond the current knowledge of AD process. This study provides new perspectives to unravel the AD microbial ecology and suggests more attention should be paid on uncharacterized metabolism specifically harboured by AD microbial communities.

Process performance and microbial community structure in thermophilic trickling biofilter reactors for biogas upgrading

This study evaluated the process performance and determined the microbial community structure of two lab-scale thermophilic trickling biofilter reactors used for biological methanation of hydrogen and carbon-dioxide for a total period of 94 days. Stable and robust operation was achieved by means of a single-pass gas flow. The quality of the output gas (>97%) was comparable to the methane purity achieved by commercial biogas upgrading systems fulfilling the specifications to be used as substitute to natural gas. The reactors' methane productivity reached >1.7 L_CH4/(L_R·d) at hydrogen loading rate of 7.2 L_H2/(L_R·d). The spatial distribution of the microbial consortia localized in the liquid media and biofilm enabled us to gain a deeper understanding on how the microbiome is structured inside the trickling biofilter. Sequencing results revealed a significant predominance of Methanothermobacter sp. in the biofilm. Unknown members of the class Clostridia were highly abundant in biofilm and liquid media, while acetate utilising bacteria predominated in liquid samples.

Innovative operation of microbial fuel cell-based biosensor for selective monitoring of acetate during anaerobic digestion

Volatile fatty acids (VFAs) especially acetate concentration have been proved to be a sensitive and reliable indicator for many anaerobic processes such as anaerobic digestion (AD). Microbial fuel cells (MFC) have been demonstrated as a promising VFAs sensor due to simple reactor design and operating conditions among microbial electrochemical biosensors. However, the conventional MFC biosensors may fail to distinguish between VFAs and other organics as real digestates containing complex organics and microbes are fed into anode directly. In the present study, an MFC based biosensor was developed and operated in a smart way for selective acetate detection. In the biosensor, acetate ions contained in the AD sample was first fed into the cathode, and then acetic ion transferred through the membrane from the cathode to anode chamber where it was further used as the sole substrate by pre-enriched electroactive biofilm for the current generation. A linear correlation between the current density and acetate concentrations (0.5-20 mM) at varied reaction time (1-5 h) was established. Then, the interference from propionate, butyrate, isobutyrate, and glucose on the performance of the biosensor was evaluated. Furthermore, the influence of sample temperatures (37 and 55 °C) was also studied. Finally, the VFAs content in real AD effluent with this biosensor was measured. The results corresponded well with gas chromatographic measurements. This simple, and reliable biosensor could serve as a promising alternative method for acetate detection in the AD process or any other acetate-rich fluids.