51
|
Affiliation(s)
- Erik Trinkaus
- Department of Anthropology, Washington University, St. Louis, Missouri 63130;
| |
Collapse
|
52
|
Movsessian AA. Phenetic Analysis in Paleoanthropology: Phenogeography of Peoples of the World. RUSS J GENET+ 2005. [DOI: 10.1007/s11177-005-0198-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
53
|
Abstract
Prior to European settlement indigenous Australians were hunter-gatherers who lived in geographically isolated small clan groups, also separated by elaborate totemic rules. Today they still reside in isolated communities throughout Australia but many have moved to the cities. They share a high incidence of a range of health problems including cardiovascular disease, renal disease and infectious diseases largely attributed to a change to a more sedentary lifestyle. This paper reviews the haematology of indigenous Australians, including blood count, frequency and causes of anaemia, inherited risk factors for thrombophilia, blood groups and the incidence and types of haematological malignancies. There are some significant genetic differences between indigenous and non-indigenous Australians particularly in the frequency of blood groups, factor V Leiden and prothrombin mutations and presence of -alpha3.7 kb thalassaemia. These findings may have practical therapeutic implications (e.g. HPA phenotype for transfusion therapy and pregnancy risk) and in predicting disease risk. Other differences are acquired, related to lifestyle and living conditions (e.g. eosinophilia secondary to parasitic infections; iron and folate deficiencies), and are largely preventable.
Collapse
Affiliation(s)
- W N Erber
- Department of Haematology, The Western Australian Centre for Pathology and Medical Research, Perth, W.A., Australia.
| | | | | |
Collapse
|
54
|
Mellars P. The impossible coincidence. A single-species model for the origins of modern human behavior in Europe. Evol Anthropol 2005. [DOI: 10.1002/evan.20037] [Citation(s) in RCA: 258] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
55
|
Bräuer G, Collard M, Stringer C. On the reliability of recent tests of the Out of Africa hypothesis for modern human origins. ACTA ACUST UNITED AC 2004; 279:701-7. [PMID: 15278940 DOI: 10.1002/ar.a.20064] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
In this paper we critique two recent studies that have been claimed to disprove the Out of Africa hypothesis for modern human origins (Hawks et al., 2000; Wolpoff et al., 2001). We show that the test prediction employed by Hawks et al. (2000) and Wolpff et al. (2001) is not relevant to many versions of the Out of Africa hypothesis, and that the key specimens they used are problematic in terms of morphological representativeness. We also show that there are significant problems with the character state datasets employed in the studies. Lastly, we highlight evidence that the main method used in the studies (pairwise difference analysis) is not reliable when applied to the type of data employed by Hawks et al. (2000) and Wolpoff et al. (2001). In view of the foregoing, we contend that Hawks et al.'s (2000) and Wolpoff et al.'s (2001) claim to have disproved the Out of Africa hypothesis cannot be sustained.
Collapse
Affiliation(s)
- Günter Bräuer
- Institute of Human Biology, University of Hamburg, 20146 Hamburg, Germany.
| | | | | |
Collapse
|
56
|
Johnson CN, Prideaux GJ. Extinctions of herbivorous mammals in the late Pleistocene of Australia in relation to their feeding ecology: No evidence for environmental change as cause of extinction. AUSTRAL ECOL 2004. [DOI: 10.1111/j.1442-9993.2004.01389.x] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
57
|
Kathleen Lyons S, Smith FA, Wagner PJ, White EP, Brown JH. Was a ‘hyperdisease’ responsible for the late Pleistocene megafaunal extinction? Ecol Lett 2004. [DOI: 10.1111/j.1461-0248.2004.00643.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
58
|
|
59
|
Rhodes CJ. 6 Electron spin resonance (some applications for the biological and environmental sciences). ACTA ACUST UNITED AC 2004. [DOI: 10.1039/b313676k] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
60
|
Abstract
Although Homo sapiens emerged in Africa some 170000 years ago, the origins of "modern" behavior, as expressed in technology and art, are attributed to people who migrated out of Africa around 50000 years ago, creating what has been called a human revolution in Europe and Asia. There is recent evidence that a mutation of the FOXP2 gene (forkhead box P2), important for the development of articulate speech, occurred some time within the past 100000 years. This event may have allowed speech to become fully autonomous, so that language no longer depended on a visuomanual component. The consequent freeing of the hands and development of pedagogy may have led to the technological advances that allowed H. sapiens to dominate and eventually replace all other hominids.
Collapse
|
61
|
Heinsohn T. Animal translocation:long-term human influences on the vertebrate zoogeography of Australasia (natural dispersal versus ethnophoresy). ACTA ACUST UNITED AC 2003. [DOI: 10.7882/az.2002.014] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Tom Heinsohn
- Department of Archaeology and Natural History, Research School of Pacific and Asian Studies, Australian National University, ACT 0200
| |
Collapse
|
62
|
Abstract
The Kow Swamp people are a fossil population of robust modern humans. We report optically stimulated luminescence (OSL) ages on sediments from Kow Swamp that are at odds with radiocarbon ages obtained previously for the site. The calibrated 14C ages place the Kow Swamp people in the period 15-9 ka. Our single aliquot OSL ages suggest that they lived around the time of the Last Glacial Maximum (LGM) between 22 and 19 ka. An LGM age for the Kow Swamp people is supported by palaeoenvironmental reconstruction. The shoreline silt, in which most of them were interred, was deposited by high lake levels between 26 and 19 ka. Few robust people were left after 19 ka when a sand lunette formed. Climate change may explain the demise of this unusual genetic population.
Collapse
Affiliation(s)
- Tim Stone
- School of Earth Sciences, The University of Melbourne, 3010, Victoria, Australia.
| | | |
Collapse
|
63
|
Ingman M, Gyllensten U. Mitochondrial genome variation and evolutionary history of Australian and New Guinean aborigines. Genome Res 2003; 13:1600-6. [PMID: 12840039 PMCID: PMC403733 DOI: 10.1101/gr.686603] [Citation(s) in RCA: 152] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
To study the evolutionary history of the Australian and New Guinean indigenous peoples, we analyzed 101 complete mitochondrial genomes including populations from Australia and New Guinea as well as from Africa, India, Europe, Asia, Melanesia, and Polynesia. The genetic diversity of the Australian mitochondrial sequences is remarkably high and is similar to that found across Asia. This is in contrast to the pattern seen in previously described Y-chromosome data where an Australia-specific haplotype was found at high frequency. The mitochondrial genome data indicate that Australia was colonized between 40 and 70 thousand years ago, either by a single migration from a heterogeneous source population or by multiple movements of smaller groups occurring over a period of time. Some Australian and New Guinea sequences form clades, suggesting the possibility of a joint colonization and/or admixture between the two regions.
Collapse
Affiliation(s)
- Max Ingman
- Department of Genetics and Pathology, Section of Medical Genetics, Rudbeck Laboratory, University of Uppsala, S-751 85 Uppsala, Sweden.
| | | |
Collapse
|
64
|
Cordaux R, Stoneking M. South Asia, the Andamanese, and the genetic evidence for an "early" human dispersal out of Africa. Am J Hum Genet 2003; 72:1586-90; author reply 1590-3. [PMID: 12817589 PMCID: PMC1180321 DOI: 10.1086/375407] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
|
65
|
|
66
|
Bowler JM, Johnston H, Olley JM, Prescott JR, Roberts RG, Shawcross W, Spooner NA. New ages for human occupation and climatic change at Lake Mungo, Australia. Nature 2003; 421:837-40. [PMID: 12594511 DOI: 10.1038/nature01383] [Citation(s) in RCA: 142] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2002] [Accepted: 12/10/2002] [Indexed: 11/09/2022]
Abstract
Australia's oldest human remains, found at Lake Mungo, include the world's oldest ritual ochre burial (Mungo III) and the first recorded cremation (Mungo I). Until now, the importance of these finds has been constrained by limited chronologies and palaeoenvironmental information. Mungo III, the source of the world's oldest human mitochondrial DNA, has been variously estimated at 30 thousand years (kyr) old, 42-45 kyr old and 62 +/- 6 kyr old, while radiocarbon estimates placed the Mungo I cremation near 20-26 kyr ago. Here we report a new series of 25 optical ages showing that both burials occurred at 40 +/- 2 kyr ago and that humans were present at Lake Mungo by 50-46 kyr ago, synchronously with, or soon after, initial occupation of northern and western Australia. Stratigraphic evidence indicates fluctuations between lake-full and drier conditions from 50 to 40 kyr ago, simultaneously with increased dust deposition, human arrival and continent-wide extinction of the megafauna. This was followed by sustained aridity between 40 and 30 kyr ago. This new chronology corrects previous estimates for human burials at this important site and provides a new picture of Homo sapiens adapting to deteriorating climate in the world's driest inhabited continent.
Collapse
Affiliation(s)
- James M Bowler
- School of Earth Sciences, University of Melbourne, Melbourne, Victoria 3010, Australia.
| | | | | | | | | | | | | |
Collapse
|
67
|
Oefner PJ, Huber CG. A decade of high-resolution liquid chromatography of nucleic acids on styrene-divinylbenzene copolymers. J Chromatogr B Analyt Technol Biomed Life Sci 2002; 782:27-55. [PMID: 12457994 DOI: 10.1016/s1570-0232(02)00700-6] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The introduction of alkylated, nonporous poly-(styrene-divinylbenzene) microparticles in 1992 enabled the subsequent development of denaturing HPLC that has emerged as the most sensitive screening method for mutations to date. Denaturing HPLC has provided unprecedented insight into human origins and prehistoric migrations, accelerated the cloning of genes involved in mono- and polygenic traits, and facilitated the mutational analysis of more than a hundred candidate genes of human disease. A significant step toward increased sample-throughput and information content was accomplished by the recent introduction of monolithic poly(styrene-divinylbenzene) capillary columns. They have enabled the construction of capillary arrays amenable to multiplex analysis of fluorescent dye-labeled nucleic acids by laser-induced fluorescence detection. Hyphenation of denaturing HPLC with electrospray ionization mass spectrometry, on the other hand, has allowed the direct elucidation of the chemical nature of DNA variation and determination of phase of multiple alleles on a chromosome.
Collapse
Affiliation(s)
- Peter J Oefner
- Genome Technology Center, Stanford University, 855 California Avenue, Palo Alto 94304, USA.
| | | |
Collapse
|
68
|
Brook BW, Bowman DMJS. Explaining the Pleistocene megafaunal extinctions: models, chronologies, and assumptions. Proc Natl Acad Sci U S A 2002; 99:14624-7. [PMID: 12417761 PMCID: PMC137468 DOI: 10.1073/pnas.232126899] [Citation(s) in RCA: 82] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Understanding of the Pleistocene megafaunal extinctions has been advanced recently by the application of simulation models and new developments in geochronological dating. Together these have been used to posit a rapid demise of megafauna due to over-hunting by invading humans. However, we demonstrate that the results of these extinction models are highly sensitive to implicit assumptions concerning the degree of prey naivety to human hunters. In addition, we show that in Greater Australia, where the extinctions occurred well before the end of the last Ice Age (unlike the North American situation), estimates of the duration of coexistence between humans and megafauna remain imprecise. Contrary to recent claims, the existing data do not prove the "blitzkrieg" model of overkill.
Collapse
Affiliation(s)
- Barry W Brook
- Key Centre for Tropical Wildlife Management, Northern Territory University, Darwin 0909, Australia.
| | | |
Collapse
|
69
|
Johnson CN. Determinants of loss of mammal species during the Late Quaternary 'megafauna' extinctions: life history and ecology, but not body size. Proc Biol Sci 2002; 269:2221-7. [PMID: 12427315 PMCID: PMC1691151 DOI: 10.1098/rspb.2002.2130] [Citation(s) in RCA: 199] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Extinctions of megafauna species during the Late Quaternary dramatically reduced the global diversity of mammals. There is intense debate over the causes of these extinctions, especially regarding the extent to which humans were involved. Most previous analyses of this question have focused on chronologies of extinction and on the archaeological evidence for human-megafauna interaction. Here, I take an alternative approach: comparison of the biological traits of extinct species with those of survivors. I use this to demonstrate two general features of the selectivity of Late Quaternary mammal extinctions in Australia, Eurasia, the Americas and Madagascar. First, large size was not directly related to risk of extinction; rather, species with slow reproductive rates were at high risk regardless of their body size. This finding rejects the 'blitzkrieg' model of overkill, in which extinctions were completed during brief intervals of selective hunting of large-bodied prey. Second, species that survived despite having low reproductive rates typically occurred in closed habitats and many were arboreal or nocturnal. Such traits would have reduced their exposure to direct interaction with people. Therefore, although this analysis rejects blitzkrieg as a general scenario for the mammal megafauna extinctions, it is consistent with extinctions being due to interaction with human populations.
Collapse
Affiliation(s)
- C N Johnson
- School of Tropical Biology, James Cook University, Townsville, QLD 4811, Australia.
| |
Collapse
|
70
|
Abstract
Most archaeological dating methods are based on decay of a naturally occurring radioisotope. (14)C activity of fossil bones and charcoal decreases with age, but must be calibrated for past changes in atmospheric activity. Uranium absorbed by shells and stalagmites is used to date on a 10(5)-year scale by observing the decay of (234)U to (230) Th. Thermoluminescence, optical luminescence, and electron spin resonance detect trapped electronic charges generated by natural radioactivity in burned flint, beach sands, shells, and tooth enamel. Rate of racemization of amino acids in fossil shells is constant at constant T, and age can be tracked from an increase in the D/L ratio.
Collapse
Affiliation(s)
- Henry P Schwarcz
- School of Geography and Geology, McMaster University, Hamilton, Ontario, L8S 4M1 Canada
| |
Collapse
|
71
|
|
72
|
Abstract
The question of the mode of origin of modern humans (Homo sapiens) has dominated palaeoanthropological debate over the last decade. This review discusses the main models proposed to explain modern human origins, and examines relevant fossil evidence from Eurasia, Africa and Australasia. Archaeological and genetic data are also discussed, as well as problems with the concept of 'modernity' itself. It is concluded that a recent African origin can be supported for H. sapiens, morphologically, behaviourally and genetically, but that more evidence will be needed, both from Africa and elsewhere, before an absolute African origin for our species and its behavioural characteristics can be established and explained.
Collapse
Affiliation(s)
- Chris Stringer
- Department of Palaeontology, The Natural History Museum, London SW7 5BD, UK.
| |
Collapse
|
73
|
Tommaseo-Ponzetta M, Attimonelli M, De Robertis M, Tanzariello F, Saccone C. Mitochondrial DNA variability of West New Guinea populations. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2002; 117:49-67. [PMID: 11748562 DOI: 10.1002/ajpa.10010] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
This paper reports human mitochondrial DNA variability in West New Guinea (the least known, western side of the island of New Guinea), not yet described from a molecular perspective. The study was carried out on 202 subjects from 12 ethnic groups, belonging to six different Papuan language families, representative of both mountain and coastal plain areas. Mitochondrial DNA hypervariable region 1 (HVS 1) and the presence of the 9-bp deletion (intergenic region COII-tRNA(Lys)) were investigated. HVS 1 sequencing identified 73 polymorphic sites defining 89 haplotypes; the 9-bp deletion, which is considered a marker of Austronesian migration in the Pacific, was found to be absent in the whole West New Guinea study sample. Statistical analysis applied to the resulting haplotypes reveal high heterogeneity and an intersecting distribution of genetic variability in these populations, despite their cultural and geographic diversity. The results of subsequent phylogenetic approaches subdivide mtDNA diversity in West New Guinea into three main clusters (groups I-III), defined by sets of polymorphisms which are also shared by some individuals from Papua New Guinea. Comparisons with worldwide HVS 1 sequences stored in the MitBASE database show the absence of these patterns outside Oceania and a few Indonesian subjects, who also lack the 9-bp deletion. This finding, which is consistent with the effects of genetic drift and prolonged isolation of West New Guinea populations, lead us to regard these patterns as New Guinea population markers, which may harbor the genetic memory of the earliest human migrations to the island.
Collapse
|
74
|
Forster P, Torroni A, Renfrew C, Röhl A. Phylogenetic star contraction applied to Asian and Papuan mtDNA evolution. Mol Biol Evol 2001; 18:1864-81. [PMID: 11557793 DOI: 10.1093/oxfordjournals.molbev.a003728] [Citation(s) in RCA: 155] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
In the past decade, mitochondrial DNA (mtDNA) of 826 representative East Asians and Papuans has been typed by high-resolution (14-enzyme) restriction fragment length polymorphism (RFLP) analysis. Compared with mtDNA control region sequencing, RFLP typing of the complete human mitochondrial DNA generally yields a cleaner phylogeny, the nodes of which can be dated assuming a molecular clock. We present here a novel star contraction algorithm which rigorously identifies starlike nodes (clusters) diagnostic of prehistoric demographic expansions. Applied to the Asian and Papuan data, we date the out-of-Africa migration of the ancestral mtDNA types that founded all Eurasian (including Papuan) lineages at 54,000 years. While the proto-Papuan mtDNA continued expanding at this time along a southern route to Papua New Guinea, the proto-Eurasian mtDNA appears to have drifted genetically and does not show any comparable demographic expansion until 30,000 years ago. By this time, the East Asian, Indian, and European mtDNA pools seem to have separated from each other, as postulated by the weak Garden of Eden model. The east Asian expansion entered America about 25,000 years ago, but was then restricted on both sides of the Pacific to more southerly latitudes during the Last Glacial Maximum around 20,000 years ago, coinciding with a chronological gap in our expansion dates. Repopulation of northern Asian latitudes occurred after the Last Glacial Maximum, obscuring the ancestral Asian gene pool of Amerinds.
Collapse
Affiliation(s)
- P Forster
- McDonald Institute for Archaeological Research, University of Cambridge, Cambridge, England.
| | | | | | | |
Collapse
|
75
|
Huoponen K, Schurr TG, Chen Y, Wallace DC. Mitochondrial DNA variation in an aboriginal Australian population: evidence for genetic isolation and regional differentiation. Hum Immunol 2001; 62:954-69. [PMID: 11543898 DOI: 10.1016/s0198-8859(01)00294-4] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The mitochondrial DNA (mt-DNA) variation of in the Walbiri tribe of the Northern Territories, Australia, was characterized by high resolution restriction fragment length polymorphism (HR-RFLP) analysis and control region sequencing. Surveying each mt-DNA for RFLPs with 14 different restriction enzymes detected 24 distinct haplotypes, whereas direct sequencing of the control region hypervariable segment I (HVS-I) of these mt-DNAs revealed 34 distinct sequences. Phylogenetic analysis of the RFLP haplotype and HVS-I sequence data depicted that the Walbiri have ten distinct haplotype groups (haplogroups), or mt-DNA lineages. The majority of the Walbiri RFLP haplotypes lacked polymorphisms common to Asian populations. In fact, most of the Walbiri haplogroups were unique to this population, although a few appeared to be subbranches of larger clusters of mt-DNAs that included other Aboriginal Australian and/or Papua New Guinea haplotypes. The similarity of these haplotypes suggested that Aboriginal Australian and Papua New Guinea populations may have once shared an ancient ancestral population(s), and then rapidly diverged from each other once geographically separated. Overall, the mt-DNA data corroborate the genetic uniqueness of Aboriginal Australian populations.
Collapse
Affiliation(s)
- K Huoponen
- Laboratory of Genetics, Department of Biology, University of Turku, Turku, Finland
| | | | | | | |
Collapse
|
76
|
Roberts RG, Flannery TF, Ayliffe LK, Yoshida H, Olley JM, Prideaux GJ, Laslett GM, Baynes A, Smith MA, Jones R, Smith BL. New ages for the last Australian megafauna: continent-wide extinction about 46,000 years ago. Science 2001; 292:1888-92. [PMID: 11397939 DOI: 10.1126/science.1060264] [Citation(s) in RCA: 376] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
All Australian land mammals, reptiles, and birds weighing more than 100 kilograms, and six of the seven genera with a body mass of 45 to 100 kilograms, perished in the late Quaternary. The timing and causes of these extinctions remain uncertain. We report burial ages for megafauna from 28 sites and infer extinction across the continent around 46,400 years ago (95% confidence interval, 51,200 to 39,800 years ago). Our results rule out extreme aridity at the Last Glacial Maximum as the cause of extinction, but not other climatic impacts; a "blitzkrieg" model of human-induced extinction; or an extended period of anthropogenic ecosystem disruption.
Collapse
Affiliation(s)
- R G Roberts
- School of Earth Sciences, University of Melbourne, Melbourne, Victoria 3010, Australia.
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
77
|
Abstract
Denaturing high-performance liquid chromatography (DHPLC) compares two or more chromosomes as a mixture of denatured and reannealed PCR amplicons, revealing the presence of a mutation by the differential retention of homo- and heteroduplex DNA on reversed-phase chromatography supports under partial denaturation. Temperature determines sensitivity, and its optimum can be predicted by computation. Single-nucleotide substitutions, deletions, and insertions have been detected successfully by on-line UV or fluorescence monitoring within 2-3 minutes in unpurified amplicons as large as 1.5 Kb. Sensitivity and specificity of DHPLC consistently exceed 96%. These features and its low cost make DHPLC one of the most powerful tools for the re-sequencing of the human and other genomes. Aside from its application to the mutational analysis of candidate genes, DHPLC has proven instrumental in elucidating human evolution and in the mapping of genes. Employing completely denaturing conditions, the utility of DHPLC has been extended to the genotyping of known polymorphisms by utilizing the ability of poly(styrene-divinylbenzene) to resolve single-stranded DNA molecules of identical size that differ in a single base. Under completely denaturing conditions, it is thus possible to resolve all possible base substitutions with the single exception of C-->G transversions. Improvements in throughput became feasible with the recent introduction of monolithic poly(styrene-divinylbenzene) capillaries that lend themselves to the fabrication of arrays connected to a multi-color laser induced fluorescence scanner or a mass spectrometer.
Collapse
Affiliation(s)
- W Xiao
- Genome Technology Center, Stanford University, Palo Alto, California, USA
| | | |
Collapse
|
78
|
Curnoe D, Grün R, Taylor L, Thackeray F. Direct ESR dating of a Pliocene hominin from Swartkrans. J Hum Evol 2001; 40:379-91. [PMID: 11322800 DOI: 10.1006/jhev.2000.0459] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Two fragments of a hominin tooth (Australopithecus robustus) and two bovid teeth from the Hanging Remnant of the Swartkrans Formation were analysed with ESR. Research was complicated by the fact that the samples came from a curated collection and their precise provenance is unknown. The environmental dose rate was reconstructed by a series of in situ gamma spectrometric measurements and elemental analyses of a range of sediment samples. U-series isotopic analyses indicated that each of the teeth had a significantly different uranium uptake history, rendering the assumptive early U-uptake and linear U-uptake models ineffective. ESR and U-series data were combined to calculate open system ages, resulting in a best estimate of 1630+/-160 ka for the Hanging Remnant. An open-system model which provides the maximum age for given U-series and ESR measurements yielded an estimate of about 2100 ka. Two bovid teeth from Member 2, previously estimated to be between 1.0 and 2.0 Ma, yielded age estimates of between about 100 and 200 ka. No known geochemical processes are likely to explain this severe age underestimation. We conclude that these samples are of Middle to Upper Pleistocene age and their presence in Member 2 was either due to reworking or inadequate stratigraphical discrimination of these deposits.
Collapse
Affiliation(s)
- D Curnoe
- Department of Archaeology and Natural History, Research School of Pacific and Asian Studies, Australian National University, Canberra, ACT, 0200, Australia.
| | | | | | | |
Collapse
|
79
|
Abstract
Sea level change during the Quaternary is primarily a consequence of the cyclic growth and decay of ice sheets, resulting in a complex spatial and temporal pattern. Observations of this variability provide constraints on the timing, rates, and magnitudes of the changes in ice mass during a glacial cycle, as well as more limited information on the distribution of ice between the major ice sheets at any time. Observations of glacially induced sea level changes also provide information on the response of the mantle to surface loading on time scales of 10(3) to 10(5) years. Regional analyses indicate that the earth-response function is depth dependent as well as spatially variable. Comprehensive models of sea level change enable the migration of coastlines to be predicted during glacial cycles, including the anthropologically important period from about 60,000 to 20,000 years ago.
Collapse
Affiliation(s)
- K Lambeck
- Research School of Earth Sciences, The Australian National University, Canberra 0200, Australia
| | | |
Collapse
|
80
|
Adcock GJ, Dennis ES, Easteal S, Huttley GA, Jermiin LS, Peacock WJ, Thorne A. Mitochondrial DNA sequences in ancient Australians: Implications for modern human origins. Proc Natl Acad Sci U S A 2001; 98:537-42. [PMID: 11209053 PMCID: PMC14622 DOI: 10.1073/pnas.98.2.537] [Citation(s) in RCA: 160] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/30/2000] [Indexed: 11/18/2022] Open
Abstract
DNA from ancient human remains provides perspectives on the origin of our species and the relationship between molecular and morphological variation. We report analysis of mtDNA from the remains of 10 ancient Australians. These include the morphologically gracile Lake Mungo 3 [ approximately 60 thousand years (ka) before present] and three other gracile individuals from Holocene deposits at Willandra Lakes (<10 ka), all within the skeletal range of living Australians, and six Pleistocene/early Holocene individuals (15 to <8 ka) from Kow Swamp with robust morphologies outside the skeletal range of contemporary indigenous Australians. Lake Mungo 3 is the oldest (Pleistocene) "anatomically modern" human from whom DNA has been recovered. His mtDNA belonged to a lineage that only survives as a segment inserted into chromosome 11 of the nuclear genome, which is now widespread among human populations. This lineage probably diverged before the most recent common ancestor of contemporary human mitochondrial genomes. This timing of divergence implies that the deepest known mtDNA lineage from an anatomically modern human occurred in Australia; analysis restricted to living humans places the deepest branches in East Africa. The other ancient Australian individuals we examined have mtDNA sequences descended from the most recent common ancestor of living humans. Our results indicate that anatomically modern humans were present in Australia before the complete fixation of the mtDNA lineage now found in all living people. Sequences from additional ancient humans may further challenge current concepts of modern human origins.
Collapse
MESH Headings
- Africa, Eastern
- Animals
- Australia
- Base Sequence
- Biological Evolution
- Chromosomes, Human, Pair 11/genetics
- DNA, Mitochondrial/genetics
- Evolution, Molecular
- Extrachromosomal Inheritance/genetics
- Female
- Fossils
- Gene Frequency
- Genetics, Population
- Hominidae/classification
- Hominidae/genetics
- Humans
- Likelihood Functions
- Male
- Models, Biological
- Molecular Sequence Data
- Mutagenesis, Insertional
- Native Hawaiian or Other Pacific Islander/genetics
- Pan paniscus/genetics
- Pan troglodytes/genetics
- Phylogeny
- Selection, Genetic
- Sequence Alignment
- Sequence Homology, Nucleic Acid
- Species Specificity
Collapse
Affiliation(s)
- G J Adcock
- Research School of Pacific and Asian Studies and John Curtin School of Medical Research, Australian National University, Canberra ACT 0200, Australia
| | | | | | | | | | | | | |
Collapse
|
81
|
|
82
|
Kayser M, Brauer S, Weiss G, Schiefenhövel W, Underhill PA, Stoneking M. Independent histories of human Y chromosomes from Melanesia and Australia. Am J Hum Genet 2001; 68:173-190. [PMID: 11115381 PMCID: PMC1234911 DOI: 10.1086/316949] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2000] [Accepted: 11/14/2000] [Indexed: 01/08/2023] Open
Abstract
To investigate the origins and relationships of Australian and Melanesian populations, 611 males from 18 populations from Australia, Melanesia, and eastern/southeastern Asia were typed for eight single-nucleotide polymorphism (SNP) loci and seven short tandem-repeat loci on the Y chromosome. A unique haplotype, DYS390.1del/RPS4Y711T, was found at a frequency of 53%-69% in Australian populations, whereas the major haplotypes found in Melanesian populations (M4G/M5T/M9G and DYS390.3del/RPS4Y711T) are absent from the Australian populations. The Y-chromosome data thus indicate independent histories for Australians and Melanesians, a finding that is in agreement with evidence from mtDNA but that contradicts some analyses of autosomal loci, which show a close relationship between Australian and Melanesian (specifically, highland Papua New Guinean) populations. Since the Australian and New Guinean landmasses were connected when first colonized by humans > or =50,000 years ago but separated some 8,000 years ago, a possible way to reconcile all the genetic data is to infer that the Y-chromosome and mtDNA results reflect the past 8,000 years of independent history for Australia and New Guinea, whereas the autosomal loci reflect the long preceding period of common origin and shared history. Two Y-chromosome haplotypes (M119C/M9G and M122C/M9G) that originated in eastern/southeastern Asia are present in coastal and island Melanesia but are rare or absent in both Australia and highland Papua New Guinea. This distribution, along with demographic analyses indicating that population expansions for both haplotypes began approximately 4,000-6,000 years ago, suggests that these haplotypes were brought to Melanesia by the Austronesian expansion. Most of the populations in this study were previously typed for mtDNA SNPs; population differentiation is greater for the Y chromosome than for mtDNA and is significantly correlated with geographic distance, a finding in agreement with results of similar analyses of European populations.
Collapse
Affiliation(s)
- M Kayser
- Max Planck Institute for Evolutionary Anthropology, Department for Evolutionary Genetics, D-04103 Leipzig, Germany.
| | | | | | | | | | | |
Collapse
|
83
|
Thorne A, Curnoe D. Sex and significance of Lake Mungo 3: reply to Brown "Australian pleistocene variation and the sex of Lake Mungo 3". J Hum Evol 2000; 39:587-600. [PMID: 11102270 DOI: 10.1006/jhev.2000.0442] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
84
|
Grün R, Stringer C. Tabun revisited: revised ESR chronology and new ESR and U-series analyses of dental material from Tabun C1. J Hum Evol 2000; 39:601-12. [PMID: 11102271 DOI: 10.1006/jhev.2000.0443] [Citation(s) in RCA: 154] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
85
|
Mcbrearty S, Brooks AS. The revolution that wasn't: a new interpretation of the origin of modern human behavior. J Hum Evol 2000; 39:453-563. [PMID: 11102266 DOI: 10.1006/jhev.2000.0435] [Citation(s) in RCA: 644] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Proponents of the model known as the "human revolution" claim that modern human behaviors arose suddenly, and nearly simultaneously, throughout the Old World ca. 40-50 ka. This fundamental behavioral shift is purported to signal a cognitive advance, a possible reorganization of the brain, and the origin of language. Because the earliest modern human fossils, Homo sapiens sensu stricto, are found in Africa and the adjacent region of the Levant at >100 ka, the "human revolution" model creates a time lag between the appearance of anatomical modernity and perceived behavioral modernity, and creates the impression that the earliest modern Africans were behaviorally primitive. This view of events stems from a profound Eurocentric bias and a failure to appreciate the depth and breadth of the African archaeological record. In fact, many of the components of the "human revolution" claimed to appear at 40-50 ka are found in the African Middle Stone Age tens of thousands of years earlier. These features include blade and microlithic technology, bone tools, increased geographic range, specialized hunting, the use of aquatic resources, long distance trade, systematic processing and use of pigment, and art and decoration. These items do not occur suddenly together as predicted by the "human revolution" model, but at sites that are widely separated in space and time. This suggests a gradual assembling of the package of modern human behaviors in Africa, and its later export to other regions of the Old World. The African Middle and early Late Pleistocene hominid fossil record is fairly continuous and in it can be recognized a number of probably distinct species that provide plausible ancestors for H. sapiens. The appearance of Middle Stone Age technology and the first signs of modern behavior coincide with the appearance of fossils that have been attributed to H. helmei, suggesting the behavior of H. helmei is distinct from that of earlier hominid species and quite similar to that of modern people. If on anatomical and behavioral grounds H. helmei is sunk into H. sapiens, the origin of our species is linked with the appearance of Middle Stone Age technology at 250-300 ka.
Collapse
Affiliation(s)
- S Mcbrearty
- Department of Anthropology, University of Connecticut, Storrs, Connecticut 06269, USA.
| | | |
Collapse
|
86
|
|
87
|
Abstract
Naming new human species may seem to be a harmless endeavor, of little interest to all but a few specialists playing out the consequences of different evolutionary explanations of phyletic variation, but it has significant implications in how humanity is viewed because studies of race and human evolution are inexorably linked. When essentialist approaches are used to interpret variation in the past as taxonomic rather than populational, as increasingly has been the case, it serves to underscore a typological view of modern human variation.
In terms of how they are treated in analysis, there often seems to be no difference between the species, subspecies, or paleodemes of the past and the populations or races whose interrelationships and demographic history are discussed today. This is not inconsequential because both history and current practice shows that science, especially anthropology, is not isolated from society.
Collapse
|
88
|
|
89
|
Affiliation(s)
- J M Bowler
- School of Earth Sciences, University of Melbourne, Parkville, Victoria, 3052, Australia.
| | | |
Collapse
|
90
|
Gillespie R, Roberts RG. On the reliability of age estimates for human remains at lake mungo. J Hum Evol 2000; 38:727-32. [PMID: 10799262 DOI: 10.1006/jhev.1999.0398] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- R Gillespie
- Dizzy Heights, Ripps Road, Stokers Siding, NSW, 2484, Australia.
| | | |
Collapse
|
91
|
GrüN R, Spooner NA, Thorne A, Mortimer G, Simpson JJ, Mcculloch MT, Taylor L, Curnoe D. Age of the Lake Mungo 3 skeleton, reply to Bowler & Magee and to Gillespie & Roberts. J Hum Evol 2000; 38:733-41. [PMID: 10799263 DOI: 10.1006/jhev.2000.0399] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- R GrüN
- Research School of Earth Sciences, The Australian National University, Canberra, ACT, 0200, Australia
| | | | | | | | | | | | | | | |
Collapse
|
92
|
Affiliation(s)
- P Brown
- Archaeology and Palaeoanthropology, University of New England, Armidale, NSW, 2351, Australia
| |
Collapse
|
93
|
|
94
|
|
95
|
Kivisild T, Bamshad MJ, Kaldma K, Metspalu M, Metspalu E, Reidla M, Laos S, Parik J, Watkins WS, Dixon ME, Papiha SS, Mastana SS, Mir MR, Ferak V, Villems R. Deep common ancestry of indian and western-Eurasian mitochondrial DNA lineages. Curr Biol 1999; 9:1331-4. [PMID: 10574762 DOI: 10.1016/s0960-9822(00)80057-3] [Citation(s) in RCA: 169] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
About a fifth of the human gene pool belongs largely either to Indo-European or Dravidic speaking people inhabiting the Indian peninsula. The 'Caucasoid share' in their gene pool is thought to be related predominantly to the Indo-European speakers. A commonly held hypothesis, albeit not the only one, suggests a massive Indo-Aryan invasion to India some 4,000 years ago [1]. Recent limited analysis of maternally inherited mitochondrial DNA (mtDNA) of Indian populations has been interpreted as supporting this concept [2] [3]. Here, this interpretation is questioned. We found an extensive deep late Pleistocene genetic link between contemporary Europeans and Indians, provided by the mtDNA haplogroup U, which encompasses roughly a fifth of mtDNA lineages of both populations. Our estimate for this split is close to the suggested time for the peopling of Asia and the first expansion of anatomically modern humans in Eurasia [4] [5] [6] [7] [8] and likely pre-dates their spread to Europe. Only a small fraction of the 'Caucasoid-specific' mtDNA lineages found in Indian populations can be ascribed to a relatively recent admixture.
Collapse
Affiliation(s)
- T Kivisild
- Department of Evolutionary Biology, Tartu University, Tartu, 51010, Estonia
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
96
|
Redd AJ, Stoneking M. Peopling of Sahul: mtDNA variation in aboriginal Australian and Papua New Guinean populations. Am J Hum Genet 1999; 65:808-28. [PMID: 10441589 PMCID: PMC1377989 DOI: 10.1086/302533] [Citation(s) in RCA: 76] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Abstract
We examined genetic affinities of Aboriginal Australian and New Guinean populations by using nucleotide variation in the two hypervariable segments of the mtDNA control region (CR). A total of 318 individuals from highland Papua New Guinea (PNG), coastal PNG, and Aboriginal Australian populations were typed with a panel of 29 sequence-specific oligonucleotide (SSO) probes. The SSO-probe panel included five new probes that were used to type an additional 1,037 individuals from several Asian populations. The SSO-type data guided the selection of 78 individuals from Australia and east Indonesia for CR sequencing. A gene tree of these CR sequences, combined with published sequences from worldwide populations, contains two previously identified highland PNG clusters that do not include any Aboriginal Australians; the highland PNG clusters have coalescent time estimates of approximately 80,000 and 122,000 years ago, suggesting ancient isolation and genetic drift. SSO-type data indicate that 84% of the sample of PNG highlander mtDNA belong to these two clusters. In contrast, the Aboriginal Australian sequences are intermingled throughout the tree and cluster with sequences from multiple populations. Phylogenetic and multidimensional-scaling analyses of CR sequences and SSO types split PNG highland and Aboriginal Australian populations and link Aboriginal Australian populations with populations from the subcontinent of India. These mtDNA results do not support a close relationship between Aboriginal Australian and PNG populations but instead suggest multiple migrations in the peopling of Sahul.
Collapse
Affiliation(s)
- A J Redd
- Department of Anthropology, The Pennsylvania State University, University Park, Pennsylvania, USA.
| | | |
Collapse
|