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Consistent Multi-Atlas Hippocampus Segmentation for Longitudinal MR Brain Images with Temporal Sparse Representation. PATCH-BASED TECHNIQUES IN MEDICAL IMAGING : SECOND INTERNATIONAL WORKSHOP, PATCH-MI 2016, HELD IN CONJUNCTION WITH MICCAI 2016, ATHENS, GREECE, OCTOBER 17, 2016 : PROCEEDINGS. PATCH-MI (WORKSHOP) (2ND : 2016 : ATHENS, GREECE) 2016; 9993:34-42. [PMID: 30294728 DOI: 10.1007/978-3-319-47118-1_5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
In this paper, we propose a novel multi-atlas based longitudinal label fusion method with temporal sparse representation technique to segment hippocampi at all time points simultaneously. First, we use groupwise longitudinal registration to simultaneously (1) estimate a group-mean image of a subject image sequence and (2) register its all time-point images to the estimated group-mean image consistently over time. Then, by registering all atlases with the group-mean image, we can align all atlases longitudinally consistently to each time point of the subject image sequence. Finally, we propose a longitudinal label fusion method to propagate all atlas labels to the subject image sequence by simultaneously labeling a set of temporally-corresponded voxels with a temporal consistency constraint on sparse representation. Experimental results demonstrate that our proposed method can achieve more accurate and consistent hippocampus segmentation than the state-of-the-art counterpart methods.
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Saber M, Kokiko-Cochran O, Puntambekar SS, Lathia JD, Lamb BT. Triggering Receptor Expressed on Myeloid Cells 2 Deficiency Alters Acute Macrophage Distribution and Improves Recovery after Traumatic Brain Injury. J Neurotrauma 2016; 34:423-435. [PMID: 26976047 DOI: 10.1089/neu.2016.4401] [Citation(s) in RCA: 68] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Traumatic brain injury (TBI) affects 1.7 million persons annually in the United States (Centers for Disease Control and Prevention). There is increasing evidence that persons exposed to TBI have increased risk of the development of multiple neurodegenerative conditions, including Alzheimer disease (AD). TBI triggers a strong neuroinflammatory response characterized by astrogliosis, activation of microglia, and infiltration of peripheral monocytes. Recent evidence suggests that alterations in innate immunity promote neurodegeneration. This includes genetic studies demonstrating that mutations in triggering receptor expressed on myeloid cells 2 (TREM2) is associated with a higher risk for not only AD but also multiple neurodegenerative diseases. To examine whether TREM2 deficiency affects pathological outcomes of TBI, Trem2 knockout (Trem2-/-) and C57BL/6J (B6) mice were given a lateral fluid percussion injury (FPI) and sacrificed at 3 and 120 days post-injury (DPI) to look at both acute and chronic consequences of TREM2 deficiency. Notably, at 3 DPI, B6 mice exposed to TBI exhibited increased expression of TREM2 in the brain. Further, Trem2-/- mice exposed to TBI exhibited enhanced macrophage activation near the lesion, but significantly less macrophage activation away from the lesion when compared with B6 mice exposed to TBI. In addition, at 120 DPI, Trem2-/- mice exposed to TBI demonstrated reduced hippocampal atrophy and rescue of TBI-induced behavioral changes when compared with B6 mice exposed to TBI. Taken together, this study suggests that TREM2 deficiency influences both acute and chronic responses to TBI, leading to an altered macrophage response at early time points, and improved pathological and functional outcomes at later time points.
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Affiliation(s)
- Maha Saber
- 1 Department of Neurosciences, Cleveland Clinic , Cleveland, Ohio.,2 Department of Molecular Medicine, Case Western Reserve University , Cleveland, Ohio
| | | | | | - Justin D Lathia
- 3 Department of Cellular Molecular Medicine, Cleveland Clinic , Cleveland, Ohio
| | - Bruce T Lamb
- 1 Department of Neurosciences, Cleveland Clinic , Cleveland, Ohio.,4 Stark Neurosciences Research Institute , Indianapolis, Indiana
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Harrison TM, Mahmood Z, Lau EP, Karacozoff AM, Burggren AC, Small GW, Bookheimer SY. An Alzheimer's Disease Genetic Risk Score Predicts Longitudinal Thinning of Hippocampal Complex Subregions in Healthy Older Adults. eNeuro 2016; 3:ENEURO.0098-16.2016. [PMID: 27482534 PMCID: PMC4945997 DOI: 10.1523/eneuro.0098-16.2016] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2016] [Revised: 06/08/2016] [Accepted: 06/13/2016] [Indexed: 01/30/2023] Open
Abstract
Variants at 21 genetic loci have been associated with an increased risk for Alzheimer's disease (AD). An important unresolved question is whether multiple genetic risk factors can be combined to increase the power to detect changes in neuroimaging biomarkers for AD. We acquired high-resolution structural images of the hippocampus in 66 healthy, older human subjects. For 45 of these subjects, longitudinal 2-year follow-up data were also available. We calculated an additive AD genetic risk score for each participant and contrasted this with a weighted risk score (WRS) approach. Each score included APOE (apolipoprotein E), CLU (clusterin), PICALM (phosphatidylinositol binding clathrin assembly protein), and family history of AD. Both unweighted risk score (URS) and WRS correlated strongly with the percentage change in thickness across the whole hippocampal complex (URS: r = -0.40; p = 0.003; WRS: r = -0.25, p = 0.048), driven by a strong relationship to entorhinal cortex thinning (URS: r = -0.35; p = 0.009; WRS: r = -0.35, p = 0.009). By contrast, at baseline the risk scores showed no relationship to thickness in any hippocampal complex subregion. These results provide compelling evidence that polygenic AD risk scores may be especially sensitive to structural change over time in regions affected early in AD, like the hippocampus and adjacent entorhinal cortex. This work also supports the paradigm of studying genetic risk for disease in healthy volunteers. Together, these findings will inform clinical trial design by supporting the idea that genetic prescreening in healthy control subjects can be useful to maximize the ability to detect an effect on a longitudinal neuroimaging endpoint, like hippocampal complex cortical thickness.
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Affiliation(s)
- Theresa M. Harrison
- Neuroscience Interdepartmental Graduate Program, University of California, Los Angeles, Los Angeles, California 90095
- Department of Psychiatry and Biobehavioral Sciences, University of California, Los Angeles, Los Angeles, California 90095
| | - Zanjbeel Mahmood
- Department of Psychiatry and Biobehavioral Sciences, University of California, Los Angeles, Los Angeles, California 90095
| | - Edward P. Lau
- Department of Psychiatry and Biobehavioral Sciences, University of California, Los Angeles, Los Angeles, California 90095
| | - Alexandra M. Karacozoff
- Staglin IMHRO Center for Cognitive Neuroscience, University of California, Los Angeles, Los Angeles, California 90095
| | - Alison C. Burggren
- Department of Psychiatry and Biobehavioral Sciences, University of California, Los Angeles, Los Angeles, California 90095
| | - Gary W. Small
- Department of Psychiatry and Biobehavioral Sciences, University of California, Los Angeles, Los Angeles, California 90095
- Semel Institute for Neuroscience and Human Behaviors, University of California, Los Angeles, Los Angeles, California 90095
- UCLA Longevity Center, University of California, Los Angeles, Los Angeles, California 90095
| | - Susan Y. Bookheimer
- Department of Psychiatry and Biobehavioral Sciences, University of California, Los Angeles, Los Angeles, California 90095
- Staglin IMHRO Center for Cognitive Neuroscience, University of California, Los Angeles, Los Angeles, California 90095
- Semel Institute for Neuroscience and Human Behaviors, University of California, Los Angeles, Los Angeles, California 90095
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