51
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Zhao Y, Long L, Xu W, Campbell RF, Large EE, Greene JS, McGrath PT. Changes to social feeding behaviors are not sufficient for fitness gains of the Caenorhabditis elegans N2 reference strain. eLife 2018; 7:38675. [PMID: 30328811 PMCID: PMC6224195 DOI: 10.7554/elife.38675] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 10/15/2018] [Indexed: 12/15/2022] Open
Abstract
The standard reference Caenorhabditis elegans strain, N2, has evolved marked behavioral changes in social feeding behavior since its isolation from the wild. We show that the causal, laboratory-derived mutations in two genes, npr-1 and glb-5, confer large fitness advantages in standard laboratory conditions. Using environmental manipulations that suppress social/solitary behavior differences, we show the fitness advantages of the derived alleles remained unchanged, suggesting selection on these alleles acted through pleiotropic traits. Transcriptomics, developmental timing, and food consumption assays showed that N2 animals mature faster, produce more sperm, and consume more food than a strain containing ancestral alleles of these genes regardless of behavioral strategies. Our data suggest that the pleiotropic effects of glb-5 and npr-1 are a consequence of changes to O2 -sensing neurons that regulate both aerotaxis and energy homeostasis. Our results demonstrate how pleiotropy can lead to profound behavioral changes in a popular laboratory model. Why do humans walk on two feet? And what makes us smarter than our ape ancestors? The answers to these questions, and countless others about the particular traits of any number of species, is often said to be natural selection – a process where genes that ensure the survival of a species are favored of others. But it is not always the answer. Other evolutionary forces, such as random changes to the frequency of certain gene variants, restrictions on the development of a certain trait and pleiotropy (where one gene influences other, seemingly unrelated traits) can also cause differences between species. Designing experiments to test whether a trait difference is due to natural selection or other factors is notoriously difficult. However, the humble nematode worm, Caenorhabditis elegans, has proven to be particularly useful in this respect. One subtype or strain of C. elegans with certain changes to its genes is used internationally as a ‘reference strain’, to ensure results between labs are comparable. This strain, N2, has been bred in the laboratory for hundreds of generations, isolated from its wild counterparts. N2 shows several differences in behavior from the wildtype, including its feeding habits. Wild C. elegans tend to feed together socially, whereas N2 prefers to feed alone. In 1998 and 2009, researchers – including some involved in the current study – have identified the genetic modifications responsible for this change in behavior. Now, Zhao et al. set out to determine whether this was due to natural selection, and if so, was there a benefit to solitary feeding in laboratory conditions that was driving this genetic change? Zhao et al. found that the genetic changes in the N2 strain gave the worms a considerable advantage in the artificial environment. However, experiments to modify the conditions the animals grew in revealed that the solitary feeding habits were not necessary for the fitness advantage. In other words, the changes in feeding habits were a symptom of the genetic changes that gave N2 a selective advantage, but they were not the cause. In other words, the changes in feeding behavior were not a result of natural selection, but rather of pleiotropy. The findings highlight that not every change in a trait is down to natural selection and must therefore be put to the test. With declining costs of DNA sequencing, researchers can now easily identify genes and regions of DNA that are likely to be under selection. However, they must be careful before leaping to the conclusion that behavioral differences linked to genetic changes are adaptive. In addition, the findings show that the laboratories relying on N2 as a model organism should be aware that the strain has evolved fundamental differences in its brain connections compared with the wildtype.
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Affiliation(s)
- Yuehui Zhao
- Department of Biological Sciences, Georgia Institute of Technology, Atlanta, United States
| | - Lijiang Long
- Department of Biological Sciences, Georgia Institute of Technology, Atlanta, United States
| | - Wen Xu
- Department of Biological Sciences, Georgia Institute of Technology, Atlanta, United States
| | - Richard F Campbell
- Department of Biological Sciences, Georgia Institute of Technology, Atlanta, United States
| | - Edward E Large
- Department of Biological Sciences, Georgia Institute of Technology, Atlanta, United States
| | | | - Patrick T McGrath
- Department of Biological Sciences, Georgia Institute of Technology, Atlanta, United States.,Department of Physics, Georgia Institute of Technology, Atlanta, United States.,Institute of Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, United States
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52
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Dennis EJ, Dobosiewicz M, Jin X, Duvall LB, Hartman PS, Bargmann CI, Vosshall LB. A natural variant and engineered mutation in a GPCR promote DEET resistance in C. elegans. Nature 2018; 562:119-123. [PMID: 30258230 DOI: 10.1038/s41586-018-0546-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Accepted: 07/27/2018] [Indexed: 12/16/2022]
Abstract
DEET (N,N-diethyl-meta-toluamide) is a synthetic chemical identified by the US Department of Agriculture in 1946 in a screen for repellents to protect soldiers from mosquito-borne diseases1,2. Since its discovery, DEET has become the world's most widely used arthropod repellent and is effective against invertebrates separated by millions of years of evolution-including biting flies3, honeybees4, ticks5, and land leeches3. In insects, DEET acts on the olfactory system5-12 and requires the olfactory receptor co-receptor Orco7,9-12, but exactly how it works remains controversial13. Here we show that the nematode Caenorhabditis elegans is sensitive to DEET and use this genetically tractable animal to study the mechanism of action of this chemical. We found that DEET is not a volatile repellent, but instead interferes selectively with chemotaxis to a variety of attractant and repellent molecules. In a forward genetic screen for DEET-resistant worms, we identified a gene that encodes a single G protein-coupled receptor, str-217, which is expressed in a single pair of chemosensory neurons that are responsive to DEET, called ADL neurons. Mis-expression of str-217 in another chemosensory neuron conferred responses to DEET. Engineered str-217 mutants, and a wild isolate of C. elegans that carries a str-217 deletion, are resistant to DEET. We found that DEET can interfere with behaviour by inducing an increase in average pause length during locomotion, and show that this increase in pausing requires both str-217 and ADL neurons. Finally, we demonstrated that ADL neurons are activated by DEET and that optogenetic activation of ADL neurons increased average pause length. This is consistent with the 'confusant' hypothesis, which proposes that DEET is not a simple repellent but that it instead modulates multiple olfactory pathways to scramble behavioural responses10,11. Our results suggest a consistent motif in the effectiveness of DEET across widely divergent taxa: an effect on multiple chemosensory neurons that disrupts the pairing between odorant stimulus and behavioural response.
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Affiliation(s)
- Emily J Dennis
- Laboratory of Neurogenetics and Behaviour, The Rockefeller University, New York, NY, USA
| | - May Dobosiewicz
- Lulu and Anthony Wang Laboratory of Neural Circuits and Behaviour, The Rockefeller University, New York, NY, USA
| | - Xin Jin
- Lulu and Anthony Wang Laboratory of Neural Circuits and Behaviour, The Rockefeller University, New York, NY, USA.,Society of Fellows, Harvard University, Cambridge, MA, USA
| | - Laura B Duvall
- Laboratory of Neurogenetics and Behaviour, The Rockefeller University, New York, NY, USA
| | - Philip S Hartman
- Department of Biology, Texas Christian University, Fort Worth, TX, USA
| | - Cornelia I Bargmann
- Lulu and Anthony Wang Laboratory of Neural Circuits and Behaviour, The Rockefeller University, New York, NY, USA.,Kavli Neural Systems Institute, New York, NY, USA
| | - Leslie B Vosshall
- Laboratory of Neurogenetics and Behaviour, The Rockefeller University, New York, NY, USA. .,Kavli Neural Systems Institute, New York, NY, USA. .,Howard Hughes Medical Institute, New York, NY, USA.
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53
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McGrath PT, Ruvinsky I. A primer on pheromone signaling in Caenorhabditis elegans for systems biologists. ACTA ACUST UNITED AC 2018; 13:23-30. [PMID: 30984890 DOI: 10.1016/j.coisb.2018.08.012] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Individuals communicate information about their age, sex, social status, and recent life history with other members of their species through the release of pheromones, chemical signals that elicit behavioral or physiological changes in the recipients. Pheromones provide a fascinating example of information exchange: animals have evolved intraspecific languages in the presence of eavesdroppers and cheaters. In this review, we discuss the recent work using the nematode C. elegans to decipher its chemical language through the analysis of ascaroside pheromones. Genetic dissection has started to identify the enzymes that produce pheromones and the neural circuits that process these signals. Ecological experiments have characterized the biotic environment of C. elegans and its relatives, including ecological relationships with a variety of species that sense or release similar blends of ascarosides. Systems biology approaches should be fruitful in understanding the organization and function of communication systems in C. elegans.
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Affiliation(s)
- Patrick T McGrath
- Department of Biological Sciences, Department of Physics; Georgia Institute of Technology, Atlanta, GA 30332.
| | - Ilya Ruvinsky
- Department of Molecular Biosciences; Northwestern University, Evanston, IL 60208.
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54
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Hilbert ZA, Kim DH. PDF-1 neuropeptide signaling regulates sexually dimorphic gene expression in shared sensory neurons of C. elegans. eLife 2018; 7:36547. [PMID: 30024377 PMCID: PMC6053303 DOI: 10.7554/elife.36547] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Accepted: 07/05/2018] [Indexed: 12/23/2022] Open
Abstract
Sexually dimorphic behaviors are a feature common to species across the animal kingdom, however how such behaviors are generated from mostly sex-shared nervous systems is not well understood. Building on our previous work which described the sexually dimorphic expression of a neuroendocrine ligand, DAF-7, and its role in behavioral decision-making in C. elegans (Hilbert and Kim, 2017), we show here that sex-specific expression of daf-7 is regulated by another neuroendocrine ligand, Pigment Dispersing Factor (PDF-1), which has previously been implicated in regulating male-specific behavior (Barrios et al., 2012). Our analysis revealed that PDF-1 signaling acts sex- and cell-specifically in the ASJ neurons to regulate the expression of daf-7, and we show that differences in PDFR-1 receptor activity account for the sex-specific effects of this pathway. Our data suggest that modulation of the sex-shared nervous system by a cascade of neuroendocrine signals can shape sexually dimorphic behaviors.
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Affiliation(s)
- Zoë A Hilbert
- Department of Biology, Massachusetts Institute of Technology, Cambridge, United States
| | - Dennis H Kim
- Department of Biology, Massachusetts Institute of Technology, Cambridge, United States
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55
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Ryu L, Cheon Y, Huh YH, Pyo S, Chinta S, Choi H, Butcher RA, Kim K. Feeding state regulates pheromone-mediated avoidance behavior via the insulin signaling pathway in Caenorhabditis elegans. EMBO J 2018; 37:embj.201798402. [PMID: 29925517 DOI: 10.15252/embj.201798402] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Revised: 05/10/2018] [Accepted: 05/15/2018] [Indexed: 12/21/2022] Open
Abstract
Animals change sensory responses and their eventual behaviors, depending on their internal metabolic status and external food availability. However, the mechanisms underlying feeding state-dependent behavioral changes remain undefined. Previous studies have shown that Caenorhabditis elegans hermaphrodite exhibits avoidance behaviors to acute exposure of a pheromone, ascr#3 (asc-ΔC9, C9). Here, we show that the ascr#3 avoidance behavior is modulated by feeding state via the insulin signaling pathway. Starvation increases ascr#3 avoidance behavior, and loss-of-function mutations in daf-2 insulin-like receptor gene dampen this starvation-induced ascr#3 avoidance behavior. DAF-2 and its downstream signaling molecules, including the DAF-16 FOXO transcription factor, act in the ascr#3-sensing ADL neurons to regulate synaptic transmission to downstream target neurons, including the AVA command interneurons. Moreover, we found that starvation decreases the secretion of INS-18 insulin-like peptides from the intestine, which antagonizes DAF-2 function in the ADL neurons. Altogether, this study provides insights about the molecular communication between intestine and sensory neurons delivering hunger message to sensory neurons, which regulates avoidance behavior from pheromones to facilitate survival chance.
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Affiliation(s)
- Leesun Ryu
- Department of Brain and Cognitive Sciences, DGIST, Daegu, Korea
| | - YongJin Cheon
- Department of Brain and Cognitive Sciences, DGIST, Daegu, Korea
| | - Yang Hoon Huh
- Electron Microscopy Research Center, Korea Basic Science Institute, Cheongju-si, Chungcheongbuk-do, Korea
| | - Seondong Pyo
- Department of Brain and Cognitive Sciences, DGIST, Daegu, Korea
| | - Satya Chinta
- Department of Chemistry, University of Florida, Gainesville, FL, USA
| | - Hongsoo Choi
- Robotics Engineering Department, DGIST, Daegu, Korea
| | - Rebecca A Butcher
- Department of Chemistry, University of Florida, Gainesville, FL, USA
| | - Kyuhyung Kim
- Department of Brain and Cognitive Sciences, DGIST, Daegu, Korea
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56
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Unconventional function of an Achaete-Scute homolog as a terminal selector of nociceptive neuron identity. PLoS Biol 2018; 16:e2004979. [PMID: 29672507 PMCID: PMC5908064 DOI: 10.1371/journal.pbio.2004979] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 03/12/2018] [Indexed: 11/19/2022] Open
Abstract
Proneural genes are among the most early-acting genes in nervous system development, instructing blast cells to commit to a neuronal fate. Drosophila Atonal and Achaete-Scute complex (AS-C) genes, as well as their vertebrate orthologs, are basic helix-loop-helix (bHLH) transcription factors with such proneural activity. We show here that a C. elegans AS-C homolog, hlh-4, functions in a fundamentally different manner. In the embryonic, larval, and adult nervous systems, hlh-4 is expressed exclusively in a single nociceptive neuron class, ADL, and its expression in ADL is maintained via transcriptional autoregulation throughout the life of the animal. However, in hlh-4 null mutants, the ADL neuron is generated and still appears neuronal in overall morphology and expression of panneuronal and pansensory features. Rather than acting as a proneural gene, we find that hlh-4 is required for the ADL neuron to function properly, to adopt its correct morphology, to express its unusually large repertoire of olfactory receptor-encoding genes, and to express other known features of terminal ADL identity, including neurotransmitter phenotype, neuropeptides, ion channels, and electrical synapse proteins. hlh-4 is sufficient to induce ADL identity features upon ectopic expression in other neuron types. The expression of ADL terminal identity features is directly controlled by HLH-4 via a phylogenetically conserved E-box motif, which, through bioinformatic analysis, we find to constitute a predictive feature of ADL-expressed terminal identity markers. The lineage that produces the ADL neuron was previously shown to require the conventional, transient proneural activity of another AS-C homolog, hlh-14, demonstrating sequential activities of distinct AS-C-type bHLH genes in neuronal specification. Taken together, we have defined here an unconventional function of an AS-C-type bHLH gene as a terminal selector of neuronal identity and we speculate that such function could be reflective of an ancestral function of an "ur-" bHLH gene.
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57
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Fagan KA, Luo J, Lagoy RC, Schroeder FC, Albrecht DR, Portman DS. A Single-Neuron Chemosensory Switch Determines the Valence of a Sexually Dimorphic Sensory Behavior. Curr Biol 2018; 28:902-914.e5. [PMID: 29526590 PMCID: PMC5862148 DOI: 10.1016/j.cub.2018.02.029] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Revised: 02/11/2018] [Accepted: 02/14/2018] [Indexed: 01/08/2023]
Abstract
Biological sex, a fundamental dimension of internal state, can modulate neural circuits to generate behavioral variation. Understanding how and why circuits are tuned by sex can provide important insights into neural and behavioral plasticity. Here we find that sexually dimorphic behavioral responses to C. elegans ascaroside sex pheromones are implemented by the functional modulation of shared chemosensory circuitry. In particular, the sexual state of a single sensory neuron pair, ADF, determines the nature of an animal's behavioral response regardless of the sex of the rest of the body. Genetic feminization of ADF causes males to be repelled by, rather than attracted to, ascarosides, whereas masculinization of ADF has the opposite effect in hermaphrodites. When ADF is ablated, both sexes are weakly repelled by ascarosides. Genetic sex modulates ADF function by tuning chemosensation: although ADF is functional in both sexes, it detects the ascaroside ascr#3 only in males, a consequence of cell-autonomous action of the master sexual regulator tra-1. This occurs in part through the conserved DM-domain gene mab-3, which promotes the male state of ADF. The sexual modulation of ADF has a key role in reproductive fitness, as feminization or ablation of ADF renders males unable to use ascarosides to locate mates. Our results reveal an economical mechanism in which sex-specific behavioral valence arises through the cell-autonomous regulation of a chemosensory switch by genetic sex, allowing a social cue with salience for both sexes to elicit navigational responses commensurate with the differing needs of each.
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Affiliation(s)
- Kelli A Fagan
- Neuroscience Graduate Program, University of Rochester, 601 Elmwood Avenue, Rochester, NY 14610, USA
| | - Jintao Luo
- Del Monte Institute for Neuroscience, University of Rochester, 601 Elmwood Avenue, Rochester, NY 14610, USA; Center for Neurotherapeutics Development, University of Rochester, 601 Elmwood Avenue, Rochester, NY 14610, USA
| | - Ross C Lagoy
- Department of Biomedical Engineering, Worcester Polytechnic Institute, 60 Prescott Street, Room 4004, Worcester, MA 01605, USA
| | | | - Dirk R Albrecht
- Department of Biomedical Engineering, Worcester Polytechnic Institute, 60 Prescott Street, Room 4004, Worcester, MA 01605, USA
| | - Douglas S Portman
- Del Monte Institute for Neuroscience, University of Rochester, 601 Elmwood Avenue, Rochester, NY 14610, USA; Center for Neurotherapeutics Development, University of Rochester, 601 Elmwood Avenue, Rochester, NY 14610, USA; Departments of Biomedical Genetics, Neuroscience, and Biology, University of Rochester, 601 Elmwood Avenue, Box 645, Rochester, NY 14610, USA.
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58
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Barr MM, García LR, Portman DS. Sexual Dimorphism and Sex Differences in Caenorhabditis elegans Neuronal Development and Behavior. Genetics 2018; 208:909-935. [PMID: 29487147 PMCID: PMC5844341 DOI: 10.1534/genetics.117.300294] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Accepted: 01/05/2018] [Indexed: 01/05/2023] Open
Abstract
As fundamental features of nearly all animal species, sexual dimorphisms and sex differences have particular relevance for the development and function of the nervous system. The unique advantages of the nematode Caenorhabditis elegans have allowed the neurobiology of sex to be studied at unprecedented scale, linking ultrastructure, molecular genetics, cell biology, development, neural circuit function, and behavior. Sex differences in the C. elegans nervous system encompass prominent anatomical dimorphisms as well as differences in physiology and connectivity. The influence of sex on behavior is just as diverse, with biological sex programming innate sex-specific behaviors and modifying many other aspects of neural circuit function. The study of these differences has provided important insights into mechanisms of neurogenesis, cell fate specification, and differentiation; synaptogenesis and connectivity; principles of circuit function, plasticity, and behavior; social communication; and many other areas of modern neurobiology.
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Affiliation(s)
- Maureen M Barr
- Department of Genetics, Rutgers University, Piscataway, New Jersey 08854-8082
| | - L Rene García
- Department of Biology, Texas A&M University, College Station, Texas 77843-3258
| | - Douglas S Portman
- Department of Biomedical Genetics, University of Rochester, New York 14642
- Department of Neuroscience, University of Rochester, New York 14642
- Department of Biology, University of Rochester, New York 14642
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59
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Sayin S, Boehm AC, Kobler JM, De Backer JF, Grunwald Kadow IC. Internal State Dependent Odor Processing and Perception-The Role of Neuromodulation in the Fly Olfactory System. Front Cell Neurosci 2018; 12:11. [PMID: 29440990 PMCID: PMC5797598 DOI: 10.3389/fncel.2018.00011] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2017] [Accepted: 01/08/2018] [Indexed: 12/21/2022] Open
Abstract
Animals rely heavily on their sense of olfaction to perform various vital interactions with an ever-in-flux environment. The turbulent and combinatorial nature of air-borne odorant cues demands the employment of various coding strategies, which allow the animal to attune to its internal needs and past or present experiences. Furthermore, these internal needs can be dependent on internal states such as hunger, reproductive state and sickness. Neuromodulation is a key component providing flexibility under such conditions. Understanding the contributions of neuromodulation, such as sensory neuron sensitization and choice bias requires manipulation of neuronal activity on a local and global scale. With Drosophila's genetic toolset, these manipulations are feasible and even allow a detailed look on the functional role of classical neuromodulators such as dopamine, octopamine and neuropeptides. The past years unraveled various mechanisms adapting chemosensory processing and perception to internal states such as hunger and reproductive state. However, future research should also investigate the mechanisms underlying other internal states including the modulatory influence of endogenous microbiota on Drosophila behavior. Furthermore, sickness induced by pathogenic infection could lead to novel insights as to the neuromodulators of circuits that integrate such a negative postingestive signal within the circuits governing olfactory behavior and learning. The enriched emporium of tools Drosophila provides will help to build a concrete picture of the influence of neuromodulation on olfaction and metabolism, adaptive behavior and our overall understanding of how a brain works.
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Affiliation(s)
- Sercan Sayin
- Neural Circuits and Metabolism, School of Life Sciences, Technische Universität München, Munich, Germany
| | - Ariane C Boehm
- Neural Circuits and Metabolism, School of Life Sciences, Technische Universität München, Munich, Germany.,Chemosensory Coding, Max Planck Institute of Neurobiology, Martinsried, Germany
| | - Johanna M Kobler
- Neural Circuits and Metabolism, School of Life Sciences, Technische Universität München, Munich, Germany.,Chemosensory Coding, Max Planck Institute of Neurobiology, Martinsried, Germany
| | - Jean-François De Backer
- Neural Circuits and Metabolism, School of Life Sciences, Technische Universität München, Munich, Germany
| | - Ilona C Grunwald Kadow
- Neural Circuits and Metabolism, School of Life Sciences, Technische Universität München, Munich, Germany.,Chemosensory Coding, Max Planck Institute of Neurobiology, Martinsried, Germany
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60
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Portman DS. Sexual modulation of sex-shared neurons and circuits in Caenorhabditis elegans. J Neurosci Res 2017; 95:527-538. [PMID: 27870393 DOI: 10.1002/jnr.23912] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Revised: 08/10/2016] [Accepted: 08/10/2016] [Indexed: 12/16/2022]
Abstract
Studies using the nematode C. elegans have provided unique insights into the development and function of sex differences in the nervous system. Enabled by the relative simplicity of this species, comprehensive studies have solved the complete cellular neuroanatomy of both sexes as well as the complete neural connectomes of the entire adult hermaphrodite and the adult male tail. This work, together with detailed behavioral studies, has revealed three aspects of sex differences in the nervous system: sex-specific neurons and circuits; circuits with sexually dimorphic synaptic connectivity; and sex differences in the physiology and functions of shared neurons and circuits. At all of these levels, biological sex influences neural development and function through the activity of a well-defined genetic hierarchy that acts throughout the body to translate chromosomal sex into the state of a master autosomal regulator of sexual differentiation, the transcription factor TRA-1A. This Review focuses on the role of genetic sex in implementing sex differences in shared neurons and circuits, with an emphasis on linking the sexual modulation of specific neural properties to the specification and optimization of sexually divergent and dimorphic behaviors. An important and unexpected finding from these studies is that chemosensory neurons are a primary focus of sexual modulation, with genetic sex adaptively shaping chemosensory repertoire to guide behavioral choice. Importantly, hormone-independent functions of genetic sex are the principal drivers of all of these sex differences, making nematodes an excellent model for understanding similar but poorly understood mechanisms that likely act throughout the animal kingdom. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Douglas S Portman
- Center for Neural Development and Disease, Department of Biomedical Genetics, Neuroscience, and Biology, University of Rochester Medical Center, Rochester, New York
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61
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Abstract
Exposure to distinct stimuli during critical periods of development can affect behavior long-term. A new study in Caenorhabditis elegans demonstrates that changes in neuronal activity of one synaptic connection following early-life pheromone exposure are sufficient to permanently enhance specific avoidance responses.
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Affiliation(s)
- Merly C Vogt
- Department of Biological Sciences, Howard Hughes Medical Institute, Columbia University, New York, NY 10027, USA.
| | - Oliver Hobert
- Department of Biological Sciences, Howard Hughes Medical Institute, Columbia University, New York, NY 10027, USA.
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62
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Early Pheromone Experience Modifies a Synaptic Activity to Influence Adult Pheromone Responses of C. elegans. Curr Biol 2017; 27:3168-3177.e3. [PMID: 28988862 DOI: 10.1016/j.cub.2017.08.068] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Revised: 08/07/2017] [Accepted: 08/29/2017] [Indexed: 11/21/2022]
Abstract
Experiences during early development can influence neuronal functions and modulate adult behaviors [1, 2]. However, the molecular mechanisms underlying the long-term behavioral effects of these early experiences are not fully understood. The C. elegans ascr#3 (asc-ΔC9; C9) pheromone triggers avoidance behavior in adult hermaphrodites [3-7]. Here, we show that hermaphrodites that are briefly exposed to ascr#3 immediately after birth exhibit increased ascr#3-specific avoidance as adults, indicating that ascr#3-experienced animals form a long-lasting memory or imprint of this early ascr#3 exposure [8]. ascr#3 imprinting is mediated by increased synaptic activity between the ascr#3-sensing ADL neurons and their post-synaptic SMB motor neuron partners via increased expression of the odr-2 glycosylated phosphatidylinositol (GPI)-linked signaling gene in the SMB neurons. Our study suggests that the memory for early ascr#3 experience is imprinted via alteration of activity of a single synaptic connection, which in turn shapes experience-dependent plasticity in adult ascr#3 responses.
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63
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Tran A, Tang A, O'Loughlin CT, Balistreri A, Chang E, Coto Villa D, Li J, Varshney A, Jimenez V, Pyle J, Tsujimoto B, Wellbrook C, Vargas C, Duong A, Ali N, Matthews SY, Levinson S, Woldemariam S, Khuri S, Bremer M, Eggers DK, L'Etoile N, Miller Conrad LC, VanHoven MK. C. elegans avoids toxin-producing Streptomyces using a seven transmembrane domain chemosensory receptor. eLife 2017; 6. [PMID: 28873053 PMCID: PMC5584987 DOI: 10.7554/elife.23770] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2016] [Accepted: 08/21/2017] [Indexed: 11/13/2022] Open
Abstract
Predators and prey co-evolve, each maximizing their own fitness, but the effects of predator–prey interactions on cellular and molecular machinery are poorly understood. Here, we study this process using the predator Caenorhabditis elegans and the bacterial prey Streptomyces, which have evolved a powerful defense: the production of nematicides. We demonstrate that upon exposure to Streptomyces at their head or tail, nematodes display an escape response that is mediated by bacterially produced cues. Avoidance requires a predicted G-protein-coupled receptor, SRB-6, which is expressed in five types of amphid and phasmid chemosensory neurons. We establish that species of Streptomyces secrete dodecanoic acid, which is sensed by SRB-6. This behavioral adaptation represents an important strategy for the nematode, which utilizes specialized sensory organs and a chemoreceptor that is tuned to recognize the bacteria. These findings provide a window into the molecules and organs used in the coevolutionary arms race between predator and potential prey.
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Affiliation(s)
- Alan Tran
- Department of Biological Sciences, San Jose State University, California, United States
| | - Angelina Tang
- Department of Biological Sciences, San Jose State University, California, United States
| | - Colleen T O'Loughlin
- Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, United States
| | - Anthony Balistreri
- Department of Chemistry, San Jose State University, California, United States
| | - Eric Chang
- Department of Biological Sciences, San Jose State University, California, United States
| | - Doris Coto Villa
- Department of Biological Sciences, San Jose State University, California, United States
| | - Joy Li
- Department of Biological Sciences, San Jose State University, California, United States
| | - Aruna Varshney
- Department of Biological Sciences, San Jose State University, California, United States
| | - Vanessa Jimenez
- Department of Biological Sciences, San Jose State University, California, United States
| | - Jacqueline Pyle
- Department of Biological Sciences, San Jose State University, California, United States
| | - Bryan Tsujimoto
- Department of Biological Sciences, San Jose State University, California, United States
| | - Christopher Wellbrook
- Department of Biological Sciences, San Jose State University, California, United States
| | - Christopher Vargas
- Department of Biological Sciences, San Jose State University, California, United States
| | - Alex Duong
- Department of Biological Sciences, San Jose State University, California, United States
| | - Nebat Ali
- Department of Biological Sciences, San Jose State University, California, United States
| | - Sarah Y Matthews
- Department of Chemistry, San Jose State University, California, United States
| | - Samantha Levinson
- Department of Chemistry, San Jose State University, California, United States
| | - Sarah Woldemariam
- Department of Cell & Tissue Biology, University of California San Francisco, San Francisco, United States
| | - Sami Khuri
- Department of Computer Science, San Jose State University, California, United States
| | - Martina Bremer
- Department of Mathematics and Statistics, San Jose State University, California, United States
| | - Daryl K Eggers
- Department of Chemistry, San Jose State University, California, United States
| | - Noelle L'Etoile
- Department of Cell & Tissue Biology, University of California San Francisco, San Francisco, United States
| | | | - Miri K VanHoven
- Department of Biological Sciences, San Jose State University, California, United States
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64
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The role of gap junctions in the C. elegans connectome. Neurosci Lett 2017; 695:12-18. [PMID: 28886984 DOI: 10.1016/j.neulet.2017.09.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Revised: 07/12/2017] [Accepted: 09/01/2017] [Indexed: 10/18/2022]
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65
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Aprison EZ, Ruvinsky I. Counteracting Ascarosides Act through Distinct Neurons to Determine the Sexual Identity of C. elegans Pheromones. Curr Biol 2017; 27:2589-2599.e3. [DOI: 10.1016/j.cub.2017.07.034] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Revised: 05/26/2017] [Accepted: 07/13/2017] [Indexed: 01/12/2023]
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66
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Zhou Y, Loeza-Cabrera M, Liu Z, Aleman-Meza B, Nguyen JK, Jung SK, Choi Y, Shou Q, Butcher RA, Zhong W. Potential Nematode Alarm Pheromone Induces Acute Avoidance in Caenorhabditis elegans. Genetics 2017; 206:1469-1478. [PMID: 28495959 PMCID: PMC5500144 DOI: 10.1534/genetics.116.197293] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2016] [Accepted: 05/04/2017] [Indexed: 01/16/2023] Open
Abstract
It is crucial for animal survival to detect dangers such as predators. A good indicator of dangers is injury of conspecifics. Here we show that fluids released from injured conspecifics invoke acute avoidance in both free-living and parasitic nematodes. Caenorhabditis elegans avoids extracts from closely related nematode species but not fruit fly larvae. The worm extracts have no impact on animal lifespan, suggesting that the worm extract may function as an alarm instead of inflicting physical harm. Avoidance of the worm extract requires the function of a cGMP signaling pathway that includes the cGMP-gated channel TAX-2/TAX-4 in the amphid sensory neurons ASI and ASK. Genetic evidence indicates that the avoidance behavior is modulated by the neurotransmitters GABA and serotonin, two common targets of anxiolytic drugs. Together, these data support a model that nematodes use a nematode-specific alarm pheromone to detect conspecific injury.
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Affiliation(s)
- Ying Zhou
- Department of BioSciences, Rice University, Houston, Texas 77005
| | | | - Zheng Liu
- Department of BioSciences, Rice University, Houston, Texas 77005
| | | | - Julie K Nguyen
- Department of BioSciences, Rice University, Houston, Texas 77005
| | - Sang-Kyu Jung
- Department of BioSciences, Rice University, Houston, Texas 77005
| | - Yuna Choi
- Department of BioSciences, Rice University, Houston, Texas 77005
| | - Qingyao Shou
- Department of Chemistry, University of Florida, Gainesville, Florida 32611
| | - Rebecca A Butcher
- Department of Chemistry, University of Florida, Gainesville, Florida 32611
| | - Weiwei Zhong
- Department of BioSciences, Rice University, Houston, Texas 77005
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67
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Hussey R, Stieglitz J, Mesgarzadeh J, Locke TT, Zhang YK, Schroeder FC, Srinivasan S. Pheromone-sensing neurons regulate peripheral lipid metabolism in Caenorhabditis elegans. PLoS Genet 2017; 13:e1006806. [PMID: 28545126 PMCID: PMC5456406 DOI: 10.1371/journal.pgen.1006806] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Revised: 06/02/2017] [Accepted: 05/05/2017] [Indexed: 12/03/2022] Open
Abstract
It is now established that the central nervous system plays an important role in regulating whole body metabolism and energy balance. However, the extent to which sensory systems relay environmental information to modulate metabolic events in peripheral tissues has remained poorly understood. In addition, it has been challenging to map the molecular mechanisms underlying discrete sensory modalities with respect to their role in lipid metabolism. In previous work our lab has identified instructive roles for serotonin signaling as a surrogate for food availability, as well as oxygen sensing, in the control of whole body metabolism. In this study, we now identify a role for a pair of pheromone-sensing neurons in regulating fat metabolism in C. elegans, which has emerged as a tractable and highly informative model to study the neurobiology of metabolism. A genetic screen revealed that GPA-3, a member of the Gα family of G proteins, regulates body fat content in the intestine, the major metabolic organ for C. elegans. Genetic and reconstitution studies revealed that the potent body fat phenotype of gpa-3 null mutants is controlled from a pair of neurons called ADL(L/R). We show that cAMP functions as the second messenger in the ADL neurons, and regulates body fat stores via the neurotransmitter acetylcholine, from downstream neurons. We find that the pheromone ascr#3, which is detected by the ADL neurons, regulates body fat stores in a GPA-3-dependent manner. We define here a third sensory modality, pheromone sensing, as a major regulator of body fat metabolism. The pheromone ascr#3 is an indicator of population density, thus we hypothesize that pheromone sensing provides a salient 'denominator' to evaluate the amount of food available within a population and to accordingly adjust metabolic rate and body fat levels. The central nervous system plays a vital role in regulating whole body metabolism and energy balance. However, the precise cellular, genetic and molecular mechanisms underlying these effects remain a major unsolved mystery. C. elegans has emerged as a tractable and highly informative model to study the neurobiology of metabolism. Previously, we have identified instructive roles for serotonin signaling as a surrogate for food availability, as well as oxygen sensing, in the control of whole body metabolism. In our current study we have identified a role for a pair of pheromone-sensing neurons in regulating fat metabolism in C. elegans. cAMP acts as a second messenger in these neurons, and regulates body fat stores via acetylcholine signaling in the nervous system. We find that the population-density-sensing pheromone detected by these neurons regulates body fat stores. Together, we define a third sensory modality, population density sensing, as a major regulator of body fat metabolism.
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Affiliation(s)
- Rosalind Hussey
- Department of Molecular Medicine and Department of Neuroscience, The Scripps Research Institute, La Jolla, California, United States of America
- Dorris Neuroscience Center, The Scripps Research Institute, La Jolla, California, United States of America
| | - Jon Stieglitz
- Kellogg School of Science and Technology, The Scripps Research Institute, La Jolla, California, United States of America
| | - Jaleh Mesgarzadeh
- Department of Molecular Medicine and Department of Neuroscience, The Scripps Research Institute, La Jolla, California, United States of America
- Department of Biology, University of California, San Diego, La Jolla, California, United States of America
| | - Tiffany T. Locke
- Department of Biology, University of California, San Diego, La Jolla, California, United States of America
| | - Ying K. Zhang
- Boyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, United States of America
| | - Frank C. Schroeder
- Boyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, United States of America
| | - Supriya Srinivasan
- Department of Molecular Medicine and Department of Neuroscience, The Scripps Research Institute, La Jolla, California, United States of America
- Dorris Neuroscience Center, The Scripps Research Institute, La Jolla, California, United States of America
- * E-mail:
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68
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Memory of recent oxygen experience switches pheromone valence in Caenorhabditis elegans. Proc Natl Acad Sci U S A 2017; 114:4195-4200. [PMID: 28373553 DOI: 10.1073/pnas.1618934114] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Animals adjust their behavioral priorities according to momentary needs and prior experience. We show that Caenorhabditis elegans changes how it processes sensory information according to the oxygen environment it experienced recently. C. elegans acclimated to 7% O2 are aroused by CO2 and repelled by pheromones that attract animals acclimated to 21% O2 This behavioral plasticity arises from prolonged activity differences in a circuit that continuously signals O2 levels. A sustained change in the activity of O2-sensing neurons reprograms the properties of their postsynaptic partners, the RMG hub interneurons. RMG is gap-junctionally coupled to the ASK and ADL pheromone sensors that respectively drive pheromone attraction and repulsion. Prior O2 experience has opposite effects on the pheromone responsiveness of these neurons. These circuit changes provide a physiological correlate of altered pheromone valence. Our results suggest C. elegans stores a memory of recent O2 experience in the RMG circuit and illustrate how a circuit is flexibly sculpted to guide behavioral decisions in a context-dependent manner.
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69
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Bharadwaj PS, Hall SE. Endogenous RNAi Pathways Are Required in Neurons for Dauer Formation in Caenorhabditis elegans. Genetics 2017; 205:1503-1516. [PMID: 28122825 PMCID: PMC5378109 DOI: 10.1534/genetics.116.195438] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Accepted: 01/21/2017] [Indexed: 12/16/2022] Open
Abstract
Animals can adapt to unfavorable environments through changes in physiology or behavior. In the nematode, Caenorhabditis elegans, environmental conditions perceived early in development determine whether the animal enters either the reproductive cycle, or enters into an alternative diapause stage named dauer. Here, we show that endogenous RNAi pathways play a role in dauer formation in crowding (high pheromone), starvation, and high temperature conditions. Disruption of the Mutator proteins or the nuclear Argonaute CSR-1 result in differential dauer-deficient phenotypes that are dependent upon the experienced environmental stress. We provide evidence that the RNAi pathways function in chemosensory neurons for dauer formation, upstream of the TGF-β and insulin signaling pathways. In addition, we show that Mutator MUT-16 expression in a subset of individual pheromone-sensing neurons is sufficient for dauer formation in high pheromone conditions, but not in starvation or high temperature conditions. Furthermore, we also show that MUT-16 and CSR-1 are required for expression of a subset of G proteins with functions in the detection of pheromone components. Together, our data suggest a model where Mutator-amplified siRNAs that associate with the CSR-1 pathway promote expression of genes required for the detection and signaling of environmental conditions to regulate development and behavior in C. elegans This study highlights a mechanism whereby RNAi pathways mediate the link between environmental stress and adaptive phenotypic plasticity in animals.
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Affiliation(s)
| | - Sarah E Hall
- Department of Biology, Syracuse University, New York 13244
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70
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Ghosh DD, Nitabach MN, Zhang Y, Harris G. Multisensory integration in C. elegans. Curr Opin Neurobiol 2017; 43:110-118. [PMID: 28273525 PMCID: PMC5501174 DOI: 10.1016/j.conb.2017.01.005] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Revised: 01/26/2017] [Accepted: 01/30/2017] [Indexed: 12/19/2022]
Abstract
Multisensory integration is a neural process by which signals from two or more distinct sensory channels are simultaneously processed to form a more coherent representation of the environment. Multisensory integration, especially when combined with a survey of internal states, provides selective advantages for animals navigating complex environments. Despite appreciation of the importance of multisensory integration in behavior, the underlying molecular and cellular mechanisms remain poorly understood. Recent work looking at how Caenorhabditis elegans makes multisensory decisions has yielded mechanistic insights into how a relatively simple and well-defined nervous system employs circuit motifs of defined features, synaptic signals and extrasynaptic neurotransmission, as well as neuromodulators in processing and integrating multiple sensory inputs to generate flexible and adaptive behavioral outputs.
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Affiliation(s)
- D Dipon Ghosh
- Department of Cellular and Molecular Physiology, Yale University, New Haven, CT, United States
| | - Michael N Nitabach
- Department of Cellular and Molecular Physiology, Yale University, New Haven, CT, United States; Department of Genetics, Yale University, New Haven, CT, United States; Kavli Institute for Neuroscience, Yale University, New Haven, CT, United States.
| | - Yun Zhang
- Department of Organismic and Evolutionary Biology, Center for Brain Science, Harvard University, Cambridge, MA, United States.
| | - Gareth Harris
- Department of Organismic and Evolutionary Biology, Center for Brain Science, Harvard University, Cambridge, MA, United States
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71
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Dissection of neuronal gap junction circuits that regulate social behavior in Caenorhabditis elegans. Proc Natl Acad Sci U S A 2017; 114:E1263-E1272. [PMID: 28143932 DOI: 10.1073/pnas.1621274114] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
A hub-and-spoke circuit of neurons connected by gap junctions controls aggregation behavior and related behavioral responses to oxygen, pheromones, and food in Caenorhabditis elegans The molecular composition of the gap junctions connecting RMG hub neurons with sensory spoke neurons is unknown. We show here that the innexin gene unc-9 is required in RMG hub neurons to drive aggregation and related behaviors, indicating that UNC-9-containing gap junctions mediate RMG signaling. To dissect the circuit in detail, we developed methods to inhibit unc-9-based gap junctions with dominant-negative unc-1 transgenes. unc-1(dn) alters a stomatin-like protein that regulates unc-9 electrical signaling; its disruptive effects can be rescued by a constitutively active UNC-9::GFP protein, demonstrating specificity. Expression of unc-1(dn) in RMG hub neurons, ADL or ASK pheromone-sensing neurons, or URX oxygen-sensing neurons disrupts specific elements of aggregation-related behaviors. In ADL, unc-1(dn) has effects opposite to those of tetanus toxin light chain, separating the roles of ADL electrical and chemical synapses. These results reveal roles of gap junctions in a complex behavior at cellular resolution and provide a tool for similar exploration of other gap junction circuits.
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72
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Chen C, Itakura E, Nelson GM, Sheng M, Laurent P, Fenk LA, Butcher RA, Hegde RS, de Bono M. IL-17 is a neuromodulator of Caenorhabditis elegans sensory responses. Nature 2017; 542:43-48. [PMID: 28099418 DOI: 10.1038/nature20818] [Citation(s) in RCA: 86] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Accepted: 11/23/2016] [Indexed: 01/08/2023]
Abstract
Interleukin-17 (IL-17) is a major pro-inflammatory cytokine: it mediates responses to pathogens or tissue damage, and drives autoimmune diseases. Little is known about its role in the nervous system. Here we show that IL-17 has neuromodulator-like properties in Caenorhabditis elegans. IL-17 can act directly on neurons to alter their response properties and contribution to behaviour. Using unbiased genetic screens, we delineate an IL-17 signalling pathway and show that it acts in the RMG hub interneurons. Disrupting IL-17 signalling reduces RMG responsiveness to input from oxygen sensors, and renders sustained escape from 21% oxygen transient and contingent on additional stimuli. Over-activating IL-17 receptors abnormally heightens responses to 21% oxygen in RMG neurons and whole animals. IL-17 deficiency can be bypassed by optogenetic stimulation of RMG. Inducing IL-17 expression in adults can rescue mutant defects within 6 h. These findings reveal a non-immunological role of IL-17 modulating circuit function and behaviour.
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Affiliation(s)
- Changchun Chen
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
| | - Eisuke Itakura
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
| | - Geoffrey M Nelson
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
| | - Ming Sheng
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
| | - Patrick Laurent
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
| | - Lorenz A Fenk
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
| | - Rebecca A Butcher
- Department of Chemistry, University of Florida, Gainesville, Florida 32611, USA
| | - Ramanujan S Hegde
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
| | - Mario de Bono
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK
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73
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Bentley B, Branicky R, Barnes CL, Chew YL, Yemini E, Bullmore ET, Vértes PE, Schafer WR. The Multilayer Connectome of Caenorhabditis elegans. PLoS Comput Biol 2016; 12:e1005283. [PMID: 27984591 PMCID: PMC5215746 DOI: 10.1371/journal.pcbi.1005283] [Citation(s) in RCA: 108] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Revised: 01/04/2017] [Accepted: 12/05/2016] [Indexed: 11/17/2022] Open
Abstract
Connectomics has focused primarily on the mapping of synaptic links in the brain; yet it is well established that extrasynaptic volume transmission, especially via monoamines and neuropeptides, is also critical to brain function and occurs primarily outside the synaptic connectome. We have mapped the putative monoamine connections, as well as a subset of neuropeptide connections, in C. elegans based on new and published gene expression data. The monoamine and neuropeptide networks exhibit distinct topological properties, with the monoamine network displaying a highly disassortative star-like structure with a rich-club of interconnected broadcasting hubs, and the neuropeptide network showing a more recurrent, highly clustered topology. Despite the low degree of overlap between the extrasynaptic (or wireless) and synaptic (or wired) connectomes, we find highly significant multilink motifs of interaction, pinpointing locations in the network where aminergic and neuropeptide signalling modulate synaptic activity. Thus, the C. elegans connectome can be mapped as a multiplex network with synaptic, gap junction, and neuromodulator layers representing alternative modes of interaction between neurons. This provides a new topological plan for understanding how aminergic and peptidergic modulation of behaviour is achieved by specific motifs and loci of integration between hard-wired synaptic or junctional circuits and extrasynaptic signals wirelessly broadcast from a small number of modulatory neurons.
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Affiliation(s)
- Barry Bentley
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
| | - Robyn Branicky
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
| | - Christopher L. Barnes
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
- HHMI Janelia Research Campus, Ashburn, VA, United States of America
| | - Yee Lian Chew
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
| | - Eviatar Yemini
- Department of Biological Sciences, Columbia University, New York, NY, United States of America
| | - Edward T. Bullmore
- Department of Psychiatry, University of Cambridge, Cambridge United Kingdom
- ImmunoPsychiatry, Alternative Discovery & Development, GlaxoSmithKline R&D, Cambridge United Kingdom
| | - Petra E. Vértes
- Department of Psychiatry, University of Cambridge, Cambridge United Kingdom
| | - William R. Schafer
- Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
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74
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Greene JS, Dobosiewicz M, Butcher RA, McGrath PT, Bargmann CI. Regulatory changes in two chemoreceptor genes contribute to a Caenorhabditis elegans QTL for foraging behavior. eLife 2016; 5. [PMID: 27893361 PMCID: PMC5125752 DOI: 10.7554/elife.21454] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Accepted: 11/14/2016] [Indexed: 12/22/2022] Open
Abstract
Natural isolates of C. elegans differ in their sensitivity to pheromones that inhibit exploratory behavior. Previous studies identified a QTL for pheromone sensitivity that includes alternative alleles of srx-43, a chemoreceptor that inhibits exploration through its activity in ASI sensory neurons. Here we show that the QTL is multigenic and includes alternative alleles of srx-44, a second chemoreceptor gene that modifies pheromone sensitivity. srx-44 either promotes or inhibits exploration depending on its expression in the ASJ or ADL sensory neurons, respectively. Naturally occurring pheromone insensitivity results in part from previously described changes in srx-43 expression levels, and in part from increased srx-44 expression in ASJ, which antagonizes ASI and ADL. Antagonism between the sensory neurons results in cellular epistasis that is reflected in their transcription of insulin genes that regulate exploration. These results and genome-wide evidence suggest that chemoreceptor genes may be preferred sites of adaptive variation in C. elegans. DOI:http://dx.doi.org/10.7554/eLife.21454.001
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Affiliation(s)
- Joshua S Greene
- Howard Hughes Medical Institute (HHMI), Lulu and Anthony Wang Laboratory of Neural Circuits and Behavior, The Rockefeller University, New York, United States
| | - May Dobosiewicz
- Howard Hughes Medical Institute (HHMI), Lulu and Anthony Wang Laboratory of Neural Circuits and Behavior, The Rockefeller University, New York, United States
| | - Rebecca A Butcher
- Department of Chemistry, University of Florida, Gainesville, United States
| | - Patrick T McGrath
- Department of Biology, Georgia Institute of Technology, Atlanta, United States
| | - Cornelia I Bargmann
- Howard Hughes Medical Institute (HHMI), Lulu and Anthony Wang Laboratory of Neural Circuits and Behavior, The Rockefeller University, New York, United States
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75
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Olfactory circuits and behaviors of nematodes. Curr Opin Neurobiol 2016; 41:136-148. [PMID: 27668755 DOI: 10.1016/j.conb.2016.09.002] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Revised: 08/19/2016] [Accepted: 09/05/2016] [Indexed: 12/29/2022]
Abstract
Over one billion people worldwide are infected with parasitic nematodes. Many parasitic nematodes actively search for hosts to infect using volatile chemical cues, so understanding the olfactory signals that drive host seeking may elucidate new pathways for preventing infections. The free-living nematode Caenorhabditis elegans is a powerful model for parasitic nematodes: because sensory neuroanatomy is conserved across nematode species, an understanding of the microcircuits that mediate olfaction in C. elegans may inform studies of olfaction in parasitic nematodes. Here we review circuit mechanisms that allow C. elegans to respond to odorants, gases, and pheromones. We also highlight work on the olfactory behaviors of parasitic nematodes that lays the groundwork for future studies of their olfactory microcircuits.
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76
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Sims JR, Ow MC, Nishiguchi MA, Kim K, Sengupta P, Hall SE. Developmental programming modulates olfactory behavior in C. elegans via endogenous RNAi pathways. eLife 2016; 5. [PMID: 27351255 PMCID: PMC4924998 DOI: 10.7554/elife.11642] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Accepted: 05/09/2016] [Indexed: 02/01/2023] Open
Abstract
Environmental stress during early development can impact adult phenotypes via programmed changes in gene expression. C. elegans larvae respond to environmental stress by entering the stress-resistant dauer diapause pathway and resume development once conditions improve (postdauers). Here we show that the osm-9 TRPV channel gene is a target of developmental programming and is down-regulated specifically in the ADL chemosensory neurons of postdauer adults, resulting in a corresponding altered olfactory behavior that is mediated by ADL in an OSM-9-dependent manner. We identify a cis-acting motif bound by the DAF-3 SMAD and ZFP-1 (AF10) proteins that is necessary for the differential regulation of osm-9, and demonstrate that both chromatin remodeling and endo-siRNA pathways are major contributors to the transcriptional silencing of the osm-9 locus. This work describes an elegant mechanism by which developmental experience influences adult phenotypes by establishing and maintaining transcriptional changes via RNAi and chromatin remodeling pathways. DOI:http://dx.doi.org/10.7554/eLife.11642.001 Increasing evidence suggests that experiencing stressful environments early on in life can have profound effects on the health and behavior of adults. For example, stressful conditions in the womb have been linked to adult depression and metabolic disorders. These effects are thought to be the result of changes in the way that genes in specific tissues are regulated in the individuals that have experienced the stress. However, it is not clear how a particular stress can cause long-term changes in gene activity in specific tissues. A microscopic worm called Caenorhabditis elegans is often used as a simple animal model to study how animals develop and behave. Previous studies have shown that adult worms that experienced stress early in life show differences in behavior and gene activity compared to genetically identical worms that did not experience the stress. Here, Sims, Ow et al. asked what signals are required for these changes to happen. The experiments show that a gene called osm-9 – which plays a role in the nervous system – is less active in sensory nerve cells in worms that experienced stress early on in life. This loss of activity resulted in the worms being unable to respond to a particular odor. Two proteins called DAF-3 and ZFP-1 are able to bind to a section of DNA in the osm-9 gene to decrease its activity in response to stress. These proteins are similar to human proteins that are important for development and are associated with some types of leukemia. Further experiments show that small molecules of ribonucleic acid in the “RNA interference” pathway also help to decrease the activity of osm-9 after stress. Together, Sims, Ow et al.’s findings suggest that environmental conditions in early life regulate the osm-9 gene through the coordinated effort of DAF-3, ZFP-1 and the RNA interference pathway. The next steps are to investigate how these molecules are able to target osm-9 and to identify other proteins that regulate gene activity in response to stress in early life. DOI:http://dx.doi.org/10.7554/eLife.11642.002
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Affiliation(s)
- Jennie R Sims
- Department of Biology, Syracuse University, Syracuse, United States
| | - Maria C Ow
- Department of Biology, Syracuse University, Syracuse, United States
| | | | - Kyuhyung Kim
- Department of Brain and Cognitive Sciences, Daegu Gyeongbuk Institute of Science and Technology, Daegu, Republic of Korea
| | - Piali Sengupta
- National Center for Behavioral Genomics, Department of Biology, Brandeis University, Waltham, United States
| | - Sarah E Hall
- Department of Biology, Syracuse University, Syracuse, United States
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77
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Leighton DH, Sternberg PW. Mating pheromones of Nematoda: olfactory signaling with physiological consequences. Curr Opin Neurobiol 2016; 38:119-24. [PMID: 27213246 DOI: 10.1016/j.conb.2016.04.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2016] [Revised: 04/11/2016] [Accepted: 04/12/2016] [Indexed: 01/17/2023]
Abstract
Secreted pheromones have long been known to influence mating in the phylum Nematoda. The study of nematode sexual behavior has greatly benefited in the last decade from the genetic and neurobiological tools available for the model nematode Caenorhabditis elegans, as well as from the chemical identification of many pheromones secreted by this species. The discovery that nematodes can influence one another's physiological development and stress responsiveness through the sharing of pheromones, in addition to simply triggering sexual attraction, is particularly striking. Here we review recent research on nematode mating pheromones, which has been conducted predominantly on C. elegans, but there are beginning to be parallel studies in other species.
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Affiliation(s)
- Daniel Hw Leighton
- HHMI and Division of Biology and Biological Engineering, Caltech, Pasadena 91125, USA
| | - Paul W Sternberg
- HHMI and Division of Biology and Biological Engineering, Caltech, Pasadena 91125, USA.
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Guo H, La Clair JJ, Masler EP, O'Doherty G, Xing Y. De Novo Asymmetric Synthesis and Biological Analysis of the Daumone Pheromones in Caenorhabditis elegans and in the Soybean Cyst Nematode Heterodera glycines. Tetrahedron 2016; 72:2280-2286. [PMID: 29445247 PMCID: PMC5809136 DOI: 10.1016/j.tet.2016.03.033] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The de novo asymmetric total syntheses of daumone 1, daumone 3 along with 5 new analogs are described. The key steps of our approach are: the diastereoselective palladium catalyzed glycosylation reaction; the Noyori reduction of 2-acetylfuran and an ynone, which introduce the absolute stereochemistry of the sugar and aglycon portion of daumone; and an Achmatowicz rearrangement, an epoxidation and a ring opening installing the remaining asymmetry of daumone. The synthetic daumones 1 and 3 as well as related analogs were evaluated for dauer activity in C. elegans and for effects on hatching of the related nematode H. glycines. This data provides additional structure activity relationships (SAR) that further inform the study of nematode signaling.
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Affiliation(s)
- Haibing Guo
- School of Nuclear Technology and Chemistry & Life Science, Hubei University of Science and Technology, Xianning 437100, China
| | - James J La Clair
- Xenobe Research Institute, P. O. Box 3052, San Diego, CA 92163-1052, USA
| | - Edward P Masler
- Nematology Laboratory, USDA-ARS-NEA, Beltsville MD 20705, USA
| | - George O'Doherty
- Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, USA
| | - Yalan Xing
- Department of Chemistry, William Paterson University, 300 Pompton Rd, Wayne, NJ 07470, USA
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79
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Neal SJ, Park J, DiTirro D, Yoon J, Shibuya M, Choi W, Schroeder FC, Butcher RA, Kim K, Sengupta P. A Forward Genetic Screen for Molecules Involved in Pheromone-Induced Dauer Formation in Caenorhabditis elegans. G3 (BETHESDA, MD.) 2016; 6:1475-87. [PMID: 26976437 PMCID: PMC4856098 DOI: 10.1534/g3.115.026450] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Accepted: 03/07/2016] [Indexed: 01/09/2023]
Abstract
Animals must constantly assess their surroundings and integrate sensory cues to make appropriate behavioral and developmental decisions. Pheromones produced by conspecific individuals provide critical information regarding environmental conditions. Ascaroside pheromone concentration and composition are instructive in the decision of Caenorhabditis elegans to either develop into a reproductive adult or enter into the stress-resistant alternate dauer developmental stage. Pheromones are sensed by a small set of sensory neurons, and integrated with additional environmental cues, to regulate neuroendocrine signaling and dauer formation. To identify molecules required for pheromone-induced dauer formation, we performed an unbiased forward genetic screen and identified phd (pheromone response-defective dauer) mutants. Here, we describe new roles in dauer formation for previously identified neuronal molecules such as the WD40 domain protein QUI-1 and MACO-1 Macoilin, report new roles for nociceptive neurons in modulating pheromone-induced dauer formation, and identify tau tubulin kinases as new genes involved in dauer formation. Thus, phd mutants define loci required for the detection, transmission, or integration of pheromone signals in the regulation of dauer formation.
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Affiliation(s)
- Scott J Neal
- Department of Biology, Brandeis University, Waltham, Massachusetts 02454 National Center for Behavioral Genomics, Brandeis University, Waltham, Massachusetts 02454
| | - JiSoo Park
- Department of Brain and Cognitive Sciences, DGIST, Daegu 711-873, Republic of Korea
| | - Danielle DiTirro
- Department of Biology, Brandeis University, Waltham, Massachusetts 02454 National Center for Behavioral Genomics, Brandeis University, Waltham, Massachusetts 02454
| | - Jason Yoon
- Department of Biology, Brandeis University, Waltham, Massachusetts 02454 National Center for Behavioral Genomics, Brandeis University, Waltham, Massachusetts 02454
| | - Mayumi Shibuya
- Department of Biology, Brandeis University, Waltham, Massachusetts 02454 National Center for Behavioral Genomics, Brandeis University, Waltham, Massachusetts 02454
| | - Woochan Choi
- Department of Brain and Cognitive Sciences, DGIST, Daegu 711-873, Republic of Korea
| | - Frank C Schroeder
- Boyce Thompson Institute, Cornell University, Ithaca, New York 14853 Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853
| | - Rebecca A Butcher
- Department of Chemistry, University of Florida, Gainesville, Florida 32611
| | - Kyuhyung Kim
- Department of Brain and Cognitive Sciences, DGIST, Daegu 711-873, Republic of Korea
| | - Piali Sengupta
- Department of Biology, Brandeis University, Waltham, Massachusetts 02454 National Center for Behavioral Genomics, Brandeis University, Waltham, Massachusetts 02454
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80
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Abstract
Sensory cues that predict reward or punishment are fundamental drivers of animal behavior. For example, attractive odors of palatable food or a potential mate predict reward, while aversive odors of pathogen-laced food or a predator predict punishment. Aversive and attractive odors can be detected by intermingled sensory neurons that express highly related olfactory receptors and display similar central projections. These findings raise basic questions of how innate odor valence is extracted from olfactory circuits, how such circuits are developmentally endowed and modulated by state, and how innate and learned odor responses are related. Here, we review odors, receptors and neural circuits associated with stimulus valence, discussing salient principles derived from studies on nematodes, insects and vertebrates. Understanding the organization of neural circuitry that mediates odor aversion and attraction will provide key insights into how the brain functions.
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81
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Neal SJ, Takeishi A, O'Donnell MP, Park J, Hong M, Butcher RA, Kim K, Sengupta P. Feeding state-dependent regulation of developmental plasticity via CaMKI and neuroendocrine signaling. eLife 2015; 4. [PMID: 26335407 PMCID: PMC4558564 DOI: 10.7554/elife.10110] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2015] [Accepted: 07/31/2015] [Indexed: 01/03/2023] Open
Abstract
Information about nutrient availability is assessed via largely unknown mechanisms to drive developmental decisions, including the choice of Caenorhabditis elegans larvae to enter into the reproductive cycle or the dauer stage. In this study, we show that CMK-1 CaMKI regulates the dauer decision as a function of feeding state. CMK-1 acts cell-autonomously in the ASI, and non cell-autonomously in the AWC, sensory neurons to regulate expression of the growth promoting daf-7 TGF-β and daf-28 insulin-like peptide (ILP) genes, respectively. Feeding state regulates dynamic subcellular localization of CMK-1, and CMK-1-dependent expression of anti-dauer ILP genes, in AWC. A food-regulated balance between anti-dauer ILP signals from AWC and pro-dauer signals regulates neuroendocrine signaling and dauer entry; disruption of this balance in cmk-1 mutants drives inappropriate dauer formation under well-fed conditions. These results identify mechanisms by which nutrient information is integrated in a small neuronal network to modulate neuroendocrine signaling and developmental plasticity. DOI:http://dx.doi.org/10.7554/eLife.10110.001 Living organisms have the remarkable ability to adapt to changes in their external environment. For example, when conditions are favorable, the larvae of the tiny roundworm C. elegans rapidly mature into adults and reproduce. However, when faced with starvation, over-crowding or other adverse conditions, they can stop growing and enter a type of stasis called the dauer stage, which enables them to survive in harsh conditions for extended periods of time. The worms enter the dauer stage if they detect high levels of a pheromone mixture that is produced by other worms—which indicates that the local population is over-crowded. However, temperature, food availability, and other environmental cues also influence this decision. A protein called TGF-β and other proteins called insulin-like peptides are produced by a group of sensory neurons in the worm's head. These proteins usually promote the growth of the worms by increasing the production of particular steroid hormones. However, high levels of the pheromone mixture, an inadequate supply of food and other adverse conditions decrease the expression of the genes that encode these proteins, which allows the worm to enter the dauer state. It is not clear how the worm senses food, nor how this is integrated with the information provided by the pheromones to influence this decision. To address these questions, Neal et al. studied a variety of mutant worms that lacked proteins involved in different aspects of food sensing. The experiments show that worms missing a protein called CaMKI enter the dauer state even under conditions in which food is plentiful and normal worms continue to grow. CaMKI inhibits entry into the dauer stage by increasing the expression of the genes that encode TGF-β and the insulin-like peptides in sensory neurons in response to food. Neal et al.'s findings reveal how CaMKI enables information about food availability to be integrated with other environmental cues to influence whether young worms enter the dauer state. Understanding how food sensing is linked to changes in hormone levels will help us appreciate why and how the availability of food has complex effects on animal biology and behavior. DOI:http://dx.doi.org/10.7554/eLife.10110.002
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Affiliation(s)
- Scott J Neal
- Department of Biology, National Center for Behavioral Genomics, Brandeis University, Waltham, United States
| | - Asuka Takeishi
- Department of Biology, National Center for Behavioral Genomics, Brandeis University, Waltham, United States
| | - Michael P O'Donnell
- Department of Biology, National Center for Behavioral Genomics, Brandeis University, Waltham, United States
| | - JiSoo Park
- Department of Brain and Cognitive Sciences, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, Republic of Korea
| | - Myeongjin Hong
- Department of Brain and Cognitive Sciences, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, Republic of Korea
| | - Rebecca A Butcher
- Department of Chemistry, University of Florida, Gainesville, United States
| | - Kyuhyung Kim
- Department of Brain and Cognitive Sciences, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, Republic of Korea
| | - Piali Sengupta
- Department of Biology, National Center for Behavioral Genomics, Brandeis University, Waltham, United States
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82
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Bhattacharya R, Francis MM. In the proper context: Neuropeptide regulation of behavioral transitions during food searching. WORM 2015; 4:e1062971. [PMID: 26430569 PMCID: PMC4588156 DOI: 10.1080/21624054.2015.1062971] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/27/2015] [Revised: 05/27/2015] [Accepted: 06/11/2015] [Indexed: 12/22/2022]
Abstract
Neuromodulation enables transient restructuring of anatomically fixed neural circuits, generating alternate outputs and distinct states that allow for flexible organismal responses to changing conditions. We recently identified a requirement for the neuropeptide-like protein NLP-12, a Caenorhabditis elegans homolog of mammalian Cholecystokinin (CCK), in the control of behavioral responses to altered food availability. We showed that deletion of nlp-12 impairs turning during local food searching while nlp-12 overexpression is sufficient to induce deep body bends and enhance turning. nlp-12 is solely expressed in the DVA interneuron that is located postsynaptic to the dopaminergic PDE neurons and presynaptic to premotor and motor neurons, well-positioned for modulating sensorimotor tasks. Interestingly, DVA was previously implicated in a NLP-12 mediated proprioceptive feedback loop during C. elegans locomotion. Here, we discuss the modulatory effects of NLP-12 with an emphasis on the potential for circuit level integration with olfactory information about food availability. In addition, we propose potential mechanisms by which DVA may integrate distinct forms of sensory information to regulate NLP-12 signaling and mediate context-dependent modulation of the motor circuit.
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Affiliation(s)
- Raja Bhattacharya
- Department of Neurobiology; University of Massachusetts Medical School ; Worcester, MA USA
| | - Michael M Francis
- Department of Neurobiology; University of Massachusetts Medical School ; Worcester, MA USA
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83
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von Reuss SH, Schroeder FC. Combinatorial chemistry in nematodes: modular assembly of primary metabolism-derived building blocks. Nat Prod Rep 2015; 32:994-1006. [PMID: 26059053 PMCID: PMC4884655 DOI: 10.1039/c5np00042d] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The nematode Caenorhabditis elegans was the first animal to have its genome fully sequenced and has become an important model organism for biomedical research. However, like many other animal model systems, its metabolome remained largely uncharacterized, until recent investigations demonstrated the importance of small molecule-based signalling cascades for virtually every aspect of nematode biology. These studies have revealed that nematodes are amazingly skilled chemists: using simple building blocks from conserved primary metabolism and a strategy of modular assembly, C. elegans and other nematode species create complex molecular architectures to regulate their development and behaviour. These nematode-derived modular metabolites (NDMMs) are based on the dideoxysugars ascarylose or paratose, which serve as scaffolds for attachment of moieties from lipid, amino acid, carbohydrate, citrate, and nucleoside metabolism. Mutant screens and comparative metabolomics based on NMR spectroscopy and MS have so-far revealed several 100 different ascarylose ("ascarosides") and a few paratose ("paratosides") derivatives, many of which represent potent signalling molecules that can be active at femtomolar levels, regulating development, behaviour, body shape, and many other life history traits. NDMM biosynthesis appears to be carefully regulated as assembly of different modules proceeds with very high specificity. Preliminary biosynthetic studies have confirmed the primary metabolism origin of some NDMM building blocks, whereas the mechanisms that underlie their highly specific assembly are not understood. Considering their functions and biosynthetic origin, NDMMs represent a new class of natural products that cannot easily be classified as "primary" or "secondary". We believe that the identification of new variants of primary metabolism-derived structures that serve important signalling functions in C. elegans and other nematodes provides a strong incentive for a comprehensive re-analysis of metabolism in higher animals, including humans.
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Affiliation(s)
- Stephan H. von Reuss
- Max Planck Institute for Chemical Ecology, Department of Bioorganic Chemistry, Jena, Germany
| | - Frank C. Schroeder
- Boyce Thompson Institute and Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA
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84
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The laboratory domestication of Caenorhabditis elegans. Trends Genet 2015; 31:224-31. [PMID: 25804345 DOI: 10.1016/j.tig.2015.02.009] [Citation(s) in RCA: 131] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2015] [Revised: 02/19/2015] [Accepted: 02/20/2015] [Indexed: 12/17/2022]
Abstract
Model organisms are of great importance to our understanding of basic biology and to making advances in biomedical research. However, the influence of laboratory cultivation on these organisms is underappreciated, and especially how that environment can affect research outcomes. Recent experiments led to insights into how the widely used laboratory reference strain of the nematode Caenorhabditis elegans compares with natural strains. Here we describe potential selective pressures that led to the fixation of laboratory-derived alleles for the genes npr-1, glb-5, and nath-10. These alleles influence a large number of traits, resulting in behaviors that affect experimental interpretations. Furthermore, strong phenotypic effects caused by these laboratory-derived alleles hinder the discovery of natural alleles. We highlight strategies to reduce the influence of laboratory-derived alleles and to harness the full power of C. elegans.
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85
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Gruner M, van der Linden AM. Plasticity of chemoreceptor gene expression: Sensory and circuit inputs modulate state-dependent chemoreceptors. WORM 2015; 4:e1023497. [PMID: 26430563 PMCID: PMC4588537 DOI: 10.1080/21624054.2015.1023497] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/13/2015] [Accepted: 02/20/2015] [Indexed: 10/25/2022]
Abstract
Animals dramatically modify their chemosensory behaviors when starved, which could allow them to alter and optimize their food-search strategies. Dynamic changes in the gene expression of chemoreceptors may be a general mechanism underlying food and state-dependent changes in chemosensory behaviors. In our recent study,(1) we identified chemoreceptors in the ADL sensory neuron type of C. elegans that are modulated by feeding state and food availability. Here, we highllight our recent findings by which sensory inputs into ADL, neuronal outputs from ADL, and circuit inputs from the RMG interneuron, which is electrically connected to ADL, are required to regulate an ADL-expressed chemoreceptor. This sensory and circuit-mediated regulation of chemoreceptor gene expression is dependent on cell-autonomous pathways acting in ADL, e.g. KIN-29, DAF-2, OCR-2 and calcium signaling, and circuit inputs from RMG mediated by NPR-1. Based on these findings, we propose an intriguing but speculative feedback modulatory circuit mechanism by which sensory perception of food and internal state signals may be coupled to regulate ADL-expressed chemoreceptors, which may allow animals to precisely regulate and fine-tune their chemosensory neuron responses as a function of feeding state.
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Affiliation(s)
- Matthew Gruner
- Department of Biology; University of Nevada ; Reno, NV USA
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86
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Abstract
We use computational models to examine the circumstances under which modulation of a single neuron can alter the dynamics of an entire circuit. We show that under some circumstances, the circuit's behavior is robust to the neuromodulation of a single hub neuron, while under other circumstances the same neuromodulatory action of a single neuron can produce a large variety of circuit outcomes. Neuromodulation of a single neuron in a circuit can either have little to no effect on the output of the circuit, or it can change the pattern of activity within that circuit. This is dependent on the synaptic parameters given the same circuit architecture, thus illustrating the insufficiency of the connectome alone for determining circuit behavior. ![]()
When does neuromodulation of a single neuron influence the output of the entire network? We constructed a five-cell circuit in which a neuron is at the center of the circuit and the remaining neurons form two distinct oscillatory subnetworks. All neurons were modeled as modified Morris−Lecar models with a hyperpolarization-activated conductance (ḡh) in addition to calcium (ḡCa), potassium (ḡK), and leak conductances. We determined the effects of varying ḡCa, ḡK, and ḡh on the frequency, amplitude, and duty cycle of a single neuron oscillator. The frequency of the single neuron was highest when the ḡK and ḡh conductances were high and ḡCa was moderate whereas, in the traditional Morris−Lecar model, the highest frequencies occur when both ḡK and ḡCa are high. We randomly sampled parameter space to find 143 hub oscillators with nearly identical frequencies but with disparate maximal conductance, duty cycles, and burst amplitudes, and then embedded each of these hub neurons into networks with different sets of synaptic parameters. For one set of network parameters, circuit behavior was virtually identical regardless of the underlying conductances of the hub neuron. For a different set of network parameters, circuit behavior varied with the maximal conductances of the hub neuron. This demonstrates that neuromodulation of a single target neuron may dramatically alter the performance of an entire network when the network is in one state, but have almost no effect when the circuit is in a different state.
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87
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Gruner M, Nelson D, Winbush A, Hintz R, Ryu L, Chung SH, Kim K, Gabel CV, van der Linden AM. Feeding state, insulin and NPR-1 modulate chemoreceptor gene expression via integration of sensory and circuit inputs. PLoS Genet 2014; 10:e1004707. [PMID: 25357003 PMCID: PMC4214617 DOI: 10.1371/journal.pgen.1004707] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Accepted: 08/26/2014] [Indexed: 12/24/2022] Open
Abstract
Feeding state and food availability can dramatically alter an animals' sensory response to chemicals in its environment. Dynamic changes in the expression of chemoreceptor genes may underlie some of these food and state-dependent changes in chemosensory behavior, but the mechanisms underlying these expression changes are unknown. Here, we identified a KIN-29 (SIK)-dependent chemoreceptor, srh-234, in C. elegans whose expression in the ADL sensory neuron type is regulated by integration of sensory and internal feeding state signals. We show that in addition to KIN-29, signaling is mediated by the DAF-2 insulin-like receptor, OCR-2 TRPV channel, and NPR-1 neuropeptide receptor. Cell-specific rescue experiments suggest that DAF-2 and OCR-2 act in ADL, while NPR-1 acts in the RMG interneurons. NPR-1-mediated regulation of srh-234 is dependent on gap-junctions, implying that circuit inputs regulate the expression of chemoreceptor genes in sensory neurons. Using physical and genetic manipulation of ADL neurons, we show that sensory inputs from food presence and ADL neural output regulate srh-234 expression. While KIN-29 and DAF-2 act primarily via the MEF-2 (MEF2) and DAF-16 (FOXO) transcription factors to regulate srh-234 expression in ADL neurons, OCR-2 and NPR-1 likely act via a calcium-dependent but MEF-2- and DAF-16-independent pathway. Together, our results suggest that sensory- and circuit-mediated regulation of chemoreceptor genes via multiple pathways may allow animals to precisely regulate and fine-tune their chemosensory responses as a function of internal and external conditions. Animals dramatically modify their chemosensory behaviors to attractive and noxious chemical stimuli when starved. This could allow them to alter and optimize their food-search strategies to increase their survival and reproduction. Changes in the gene expression of chemoreceptors specialized in detecting environmental stimuli is observed in fish, insects and nematodes, and may be a general mechanism underlying the changes in chemosensory behaviors observed in starved animals. To elucidate this mechanism, we have developed an in vivo reporter assay in C. elegans for monitoring the expression of a candidate chemoreceptor gene in a single sensory neuron type, called ADL, as a function of feeding state. Using this reporter assay, we show that sensory inputs into ADL and neural outputs from ADL, as well as inputs from the RMG interneuron, which is electrically connected to ADL, are required to fine-tune expression of chemoreceptor genes in ADL. Sensory and circuit-mediated regulation of chemoreceptor gene expression is dependent on multiple pathways, including the neuropeptide receptor, NPR-1, and the DAF-2 insulin-like receptor. Our results reveal mechanisms underlying chemoreceptor gene expression, and provide insight into how expression changes in chemoreceptor genes may contribute to changes in chemosensory behavior as a function of feeding state.
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Affiliation(s)
- Matthew Gruner
- Department of Biology, University of Nevada, Reno, Nevada, United States of America
| | - Dru Nelson
- Department of Biology, University of Nevada, Reno, Nevada, United States of America
| | - Ari Winbush
- Department of Biology, University of Nevada, Reno, Nevada, United States of America
| | - Rebecca Hintz
- Department of Agriculture, Nutrition and Veterinary Sciences, University of Nevada, Reno, Nevada, United States of America
| | - Leesun Ryu
- Department of Brain Science, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, Korea
| | - Samuel H. Chung
- Department of Physiology and Biophysics, Boston University School of Medicine, Boston, Massachusetts, United States of America
- Boston University Photonics Center, Boston, Massachusetts, United States of America
| | - Kyuhyung Kim
- Department of Brain Science, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, Korea
| | - Chrisopher V. Gabel
- Department of Physiology and Biophysics, Boston University School of Medicine, Boston, Massachusetts, United States of America
- Boston University Photonics Center, Boston, Massachusetts, United States of America
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88
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Ryan DA, Miller RM, Lee K, Neal SJ, Fagan KA, Sengupta P, Portman DS. Sex, age, and hunger regulate behavioral prioritization through dynamic modulation of chemoreceptor expression. Curr Biol 2014; 24:2509-17. [PMID: 25438941 DOI: 10.1016/j.cub.2014.09.032] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2014] [Revised: 08/04/2014] [Accepted: 09/11/2014] [Indexed: 11/28/2022]
Abstract
BACKGROUND Adaptive behavioral prioritization requires flexible outputs from fixed neural circuits. In C. elegans, the prioritization of feeding versus mate searching depends on biological sex (males will abandon food to search for mates, whereas hermaphrodites will not) as well as developmental stage and feeding status. Previously, we found that males are less attracted than hermaphrodites to the food-associated odorant diacetyl, suggesting that sensory modulation may contribute to behavioral prioritization. RESULTS We show that somatic sex acts cell autonomously to reconfigure the olfactory circuit by regulating a key chemoreceptor, odr-10, in the AWA neurons. Moreover, we find that odr-10 has a significant role in food detection, the regulation of which contributes to sex differences in behavioral prioritization. Overexpression of odr-10 increases male food attraction and decreases off-food exploration; conversely, loss of odr-10 impairs food taxis in both sexes. In larvae, both sexes prioritize feeding over exploration; correspondingly, the sexes have equal odr-10 expression and food attraction. Food deprivation, which transiently favors feeding over exploration in adult males, increases male food attraction by activating odr-10 expression. Furthermore, the weak expression of odr-10 in well-fed adult males has important adaptive value, allowing males to efficiently locate mates in a patchy food environment. CONCLUSIONS We find that modulated expression of a single chemoreceptor plays a key role in naturally occurring variation in the prioritization of feeding and exploration. The convergence of three independent regulatory inputs--somatic sex, age, and feeding status--on chemoreceptor expression highlights sensory function as a key source of plasticity in neural circuits.
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Affiliation(s)
- Deborah A Ryan
- Center for Neural Development and Disease, Department of Biomedical Genetics, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA
| | - Renee M Miller
- Center for Neural Development and Disease, Department of Biomedical Genetics, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA; Department of Brain and Cognitive Sciences, University of Rochester, Rochester, NY 14642, USA
| | - KyungHwa Lee
- Center for Neural Development and Disease, Department of Biomedical Genetics, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA
| | - Scott J Neal
- Department of Biology, National Center for Behavioral Genomics, Brandeis University, Waltham, MA 02454, USA
| | - Kelli A Fagan
- Center for Neural Development and Disease, Department of Biomedical Genetics, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA
| | - Piali Sengupta
- Department of Biology, National Center for Behavioral Genomics, Brandeis University, Waltham, MA 02454, USA
| | - Douglas S Portman
- Center for Neural Development and Disease, Department of Biomedical Genetics, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA.
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89
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Kalis AK, Kissiov DU, Kolenbrander ES, Palchick Z, Raghavan S, Tetreault BJ, Williams E, Loer CM, Wolff JR. Patterning of sexually dimorphic neurogenesis in the caenorhabditis elegans ventral cord by Hox and TALE homeodomain transcription factors. Dev Dyn 2014; 243:159-71. [PMID: 24115648 DOI: 10.1002/dvdy.24064] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2013] [Revised: 09/16/2013] [Accepted: 09/16/2013] [Indexed: 01/18/2023] Open
Abstract
BACKGROUND Reproduction in animals requires development of distinct neurons in each sex. In C. elegans, most ventral cord neurons (VCNs) are present in both sexes, with the exception of six hermaphrodite-specific neurons (VCs) and nine pairs of male-specific neurons (CAs and CPs) that arise from analogous precursor cells. How are the activities of sexual regulators and mediators of neuronal survival, division, and fate coordinated to generate sex-specificity in VCNs? RESULTS To address this, we have developed a toolkit of VCN markers that allows us to examine sex-specific neurogenesis, asymmetric fates of daughters of a neuroblast division, and regional specification on the anteroposterior axis. Here, we describe the roles of the Hox transcription factors LIN-39 and MAB-5 in promoting survival, differentiation, and regionalization of VCNs. We also find that the TALE class homeodomain proteins CEH-20 and UNC-62 contribute to specification of neurotransmitter fate in males. Furthermore, we identify that VCN sex is determined during the L1 larval stage. CONCLUSIONS These findings, combined with future analyses made possible by the suite of VCN markers described here, will elucidate how Hox-mediated cell fate decisions and sex determination intersect to influence development of neuronal sex differences.
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90
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Abstract
People think they are in control of their own decisions: what to eat or drink, whom to marry or pick a fight with, where to live, what to buy. Behavioural economists and neurophysiologists have long studied decision-making behaviours. However, these behaviours have only recently been studied through the light of molecular genetics. Here, we review recent research in mice, Drosophila melanogaster and Caenorhabditis elegans, that analyses the molecular and cellular mechanisms underlying decision-making. These studies interrogate decision-making about food, sexual behaviour, aggression or foraging strategies, and add molecular and cell biology understanding onto the consilience of brain and decision.
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Affiliation(s)
- Nilay Yapici
- Laboratory of Neurogenetics and Behavior, The Rockefeller University, New York, NY, USA
| | - Manuel Zimmer
- Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria
| | - Ana I Domingos
- Obesity Laboratory, Gulbenkian Science Institute, Rua Da Quinta Grande, Oeiras, Portugal
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91
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Emmons SW. The development of sexual dimorphism: studies of the Caenorhabditis elegans male. WILEY INTERDISCIPLINARY REVIEWS. DEVELOPMENTAL BIOLOGY 2014; 3:239-62. [PMID: 25262817 PMCID: PMC4181595 DOI: 10.1002/wdev.136] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Accepted: 04/02/2014] [Indexed: 01/09/2023]
Abstract
Studies of the development of the Caenorhabditis elegans male have been carried out with the aim of understanding the basis of sexual dimorphism. Postembryonic development of the two C. elegans sexes differs extensively. Development along either the hermaphrodite or male pathway is specified initially by the X to autosome ratio. The regulatory events initiated by this ratio include a male-determining paracrine intercellular signal. Expression of this signal leads to different consequences in three regions of the body: the nongonadal soma, the somatic parts of the gonad, and the germ line. In the nongonadal soma, activity of the key Zn-finger transcription factor TRA-1 determines hermaphrodite development; in its absence, the male pathway is followed. Only a few genes directly regulated by TRA-1 are currently known, including members of the evolutionarily conserved, male-determining DM domain Zn-finger transcription factors. In the somatic parts of the gonad and germ line, absence of TRA-1 activity is not sufficient for full expression of the male pathway. Several additional transcription factors involved have been identified. In the germ line, regulatory genes for sperm development that act at the level of RNA in the cytoplasm play a prominent role.
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Affiliation(s)
- Scott W. Emmons
- Albert Einstein College of Medicine 1300 Morris Park Ave. Bronx, New York 10461
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92
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Fagan KA, Portman DS. Sexual modulation of neural circuits and behavior in Caenorhabditis elegans. Semin Cell Dev Biol 2014; 33:3-9. [PMID: 24937129 DOI: 10.1016/j.semcdb.2014.06.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2014] [Revised: 06/05/2014] [Accepted: 06/09/2014] [Indexed: 01/07/2023]
Abstract
Sex differences in behavior-both sex-specific and shared behaviors-are fundamental to nearly all animal species. One often overlooked mechanism by which these behavioral differences can be generated is through sex-specific modulation of shared circuitry (i.e., circuits present in both sexes). In vertebrates this modulation is likely regulated by hormone-dependent mechanisms as well as by somatic sex itself; invertebrate models have particular promise for understanding the latter of these. Here we review molecular and behavioral evidence of sexual modulation of shared circuitry in the nematode Caenorhabditis elegans. Multiple behaviors in this species, both copulatory and not, are modulated by the genetic sex of shared neurons and circuit. These studies are close to uncovering the molecular mechanisms by which somatic sex modulates neural function in the worm, mechanisms which may be well conserved in more complex organisms. Improving our understanding of the modulation of neural circuit development and function by somatic sex may lend important insight into sex differences in the mammalian nervous system which, in turn, may have important implications for sex biases in disease.
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Affiliation(s)
- Kelli A Fagan
- Neuroscience Graduate Program, University of Rochester, Rochester, NY 14642, United States; Center for Neural Development and Disease and Department of Biomedical Genetics, University of Rochester, Rochester, NY 14642, United States
| | - Douglas S Portman
- Center for Neural Development and Disease and Department of Biomedical Genetics, University of Rochester, Rochester, NY 14642, United States; Department of Biomedical Genetics, University of Rochester, Rochester, NY 14642, United States.
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93
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Olofsson B. The olfactory neuron AWC promotes avoidance of normally palatable food following chronic dietary restriction. ACTA ACUST UNITED AC 2014; 217:1790-8. [PMID: 24577446 PMCID: PMC4020945 DOI: 10.1242/jeb.099929] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Changes in metabolic state alter foraging behavior and food preference in animals. Here, I show that normally attractive food becomes repulsive to Caenorhabditis elegans if animals are chronically undernourished as a result of alimentary tract defects. This behavioral plasticity is achieved in two ways: increased food leaving and induction of aversive behavior towards food. A particularly strong food avoider is defective in the chitin synthase that makes the pharyngeal lining. Food avoidance induced by underfeeding is mediated by cGMP signaling in the olfactory neurons AWC and AWB, and the gustatory neurons ASJ and ASK. Food avoidance is enhanced by increased population density and is reduced if the animals are unable to correctly interpret their nutritional state as a result of defects in the AMP kinase or TOR/S6kinase pathways. The TGF-β/DBL-1 pathway suppresses food avoidance and the cellular basis for this is distinct from its role in aversive olfactory learning of harmful food. This study suggests that nutritional state feedback via nutrient sensors, population size and olfactory neurons guides food preference in C. elegans.
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Affiliation(s)
- Birgitta Olofsson
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK Department of Zoology, University of Cambridge, Cambridge CB2 3EJ, UK
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94
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Andersen EC, Bloom JS, Gerke JP, Kruglyak L. A variant in the neuropeptide receptor npr-1 is a major determinant of Caenorhabditis elegans growth and physiology. PLoS Genet 2014; 10:e1004156. [PMID: 24586193 PMCID: PMC3937155 DOI: 10.1371/journal.pgen.1004156] [Citation(s) in RCA: 114] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2013] [Accepted: 12/17/2013] [Indexed: 01/10/2023] Open
Abstract
The mechanistic basis for how genetic variants cause differences in phenotypic traits is often elusive. We identified a quantitative trait locus in Caenorhabditis elegans that affects three seemingly unrelated phenotypic traits: lifetime fecundity, adult body size, and susceptibility to the human pathogen Staphyloccus aureus. We found a QTL for all three traits arises from variation in the neuropeptide receptor gene npr-1. Moreover, we found that variation in npr-1 is also responsible for differences in 247 gene expression traits. Variation in npr-1 is known to determine whether animals disperse throughout a bacterial lawn or aggregate at the edges of the lawn. We found that the allele that leads to aggregation is associated with reduced growth and reproductive output. The altered gene expression pattern caused by this allele suggests that the aggregation behavior might cause a weak starvation state, which is known to reduce growth rate and fecundity. Importantly, we show that variation in npr-1 causes each of these phenotypic differences through behavioral avoidance of ambient oxygen concentrations. These results suggest that variation in npr-1 has broad pleiotropic effects mediated by altered exposure to bacterial food. Using the nematode roundworm Caenorhabditis elegans, we identified differences in lifetime fecundity, adult body size, and susceptibility to the human pathogen Staphyloccus aureus between the laboratory strain (N2) from Bristol, England and a wild strain (CB4856) from Hawaii, USA. Using linkage mapping and other genetic tests, we found a QTL for all three traits arises from variation in the neuropeptide receptor gene npr-1. Moreover, we found that variation in npr-1 is also responsive for differences in 247 gene expression traits. Variation in npr-1 is known to determine whether animals disperse throughout a bacterial lawn or aggregate at the edges of the lawn. We found that the allele that leads to aggregation is associated with reduced growth and reproductive output likely caused by a weak chronic starvation state. These results suggest that variation in npr-1 has broad effects on the phenotype of an organism mediated by altered exposure to bacterial food.
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Affiliation(s)
- Erik C. Andersen
- Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America
- * E-mail: (ECA); (LK)
| | - Joshua S. Bloom
- Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America
- Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America
| | - Justin P. Gerke
- Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America
| | - Leonid Kruglyak
- Departments of Human Genetics and Biological Chemistry, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America
- Howard Hughes Medical Institute, Chevy Chase, Maryland, United States of America
- * E-mail: (ECA); (LK)
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95
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Peymen K, Watteyne J, Frooninckx L, Schoofs L, Beets I. The FMRFamide-Like Peptide Family in Nematodes. Front Endocrinol (Lausanne) 2014; 5:90. [PMID: 24982652 PMCID: PMC4058706 DOI: 10.3389/fendo.2014.00090] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/06/2014] [Accepted: 05/31/2014] [Indexed: 12/31/2022] Open
Abstract
In the three decades since the FMRFamide peptide was isolated from the mollusk Macrocallista nimbosa, structurally similar peptides sharing a C-terminal RFamide motif have been identified across the animal kingdom. FMRFamide-like peptides (FLPs) represent the largest known family of neuropeptides in invertebrates. In the phylum Nematoda, at least 32 flp-genes are classified, making the FLP system of nematodes unusually complex. The diversity of the nematode FLP complement is most extensively mapped in Caenorhabditis elegans, where over 70 FLPs have been predicted. FLPs have shown to be expressed in the majority of the 302 C. elegans neurons including interneurons, sensory neurons, and motor neurons. The vast expression of FLPs is reflected in the broad functional repertoire of nematode FLP signaling, including neuroendocrine and neuromodulatory effects on locomotory activity, reproduction, feeding, and behavior. In contrast to the many identified nematode FLPs, only few peptides have been assigned a receptor and there is the need to clarify the pathway components and working mechanisms of the FLP signaling network. Here, we review the diversity, distribution, and functions of FLPs in nematodes.
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Affiliation(s)
- Katleen Peymen
- Functional Genomics and Proteomics Group, Department of Biology, KU Leuven, Leuven, Belgium
| | - Jan Watteyne
- Functional Genomics and Proteomics Group, Department of Biology, KU Leuven, Leuven, Belgium
| | - Lotte Frooninckx
- Functional Genomics and Proteomics Group, Department of Biology, KU Leuven, Leuven, Belgium
| | - Liliane Schoofs
- Functional Genomics and Proteomics Group, Department of Biology, KU Leuven, Leuven, Belgium
| | - Isabel Beets
- Functional Genomics and Proteomics Group, Department of Biology, KU Leuven, Leuven, Belgium
- *Correspondence: Isabel Beets, Functional Genomics and Proteomics Group, Department of Biology, KU Leuven, Naamsestraat 59, Leuven 3000, Belgium e-mail:
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96
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Li C, Kim K. Family of FLP Peptides in Caenorhabditis elegans and Related Nematodes. Front Endocrinol (Lausanne) 2014; 5:150. [PMID: 25352828 PMCID: PMC4196577 DOI: 10.3389/fendo.2014.00150] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/04/2014] [Accepted: 09/09/2014] [Indexed: 11/16/2022] Open
Abstract
Neuropeptides regulate all aspects of behavior in multicellular organisms. Because of their ability to act at long distances, neuropeptides can exert their effects beyond the conventional synaptic connections, thereby adding an intricate layer of complexity to the activity of neural networks. In the nematode Caenorhabditis elegans, a large number of neuropeptide genes that are expressed throughout the nervous system have been identified. The actions of these peptides supplement the synaptic connections of the 302 neurons, allowing for fine tuning of neural networks and increasing the ways in which behaviors can be regulated. In this review, we focus on a large family of genes encoding FMRFamide-related peptides (FaRPs). These genes, the flp genes, have been used as a starting point to identifying flp genes throughout Nematoda. Nematodes have the largest family of FaRPs described thus far. The challenges in the future are the elucidation of their functions and the identification of the receptors and signaling pathways through which they function.
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Affiliation(s)
- Chris Li
- Department of Biology, City College of New York and The Graduate Center, City University of New York, New York, NY, USA
- *Correspondence: Chris Li, 160 Convent Avenue, MR526, New York, NY 10031, USA e-mail: ; Kyuhyung Kim, 333 Techno Jungang-Daero, Hyeonpung-Myeon, Dalseong-Gun, Daegu 711-873, South Korea e-mail:
| | - Kyuhyung Kim
- Department of Brain Science, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, South Korea
- *Correspondence: Chris Li, 160 Convent Avenue, MR526, New York, NY 10031, USA e-mail: ; Kyuhyung Kim, 333 Techno Jungang-Daero, Hyeonpung-Myeon, Dalseong-Gun, Daegu 711-873, South Korea e-mail:
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97
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Kohl J, Ostrovsky AD, Frechter S, Jefferis GSXE. A bidirectional circuit switch reroutes pheromone signals in male and female brains. Cell 2013; 155:1610-23. [PMID: 24360281 PMCID: PMC3898676 DOI: 10.1016/j.cell.2013.11.025] [Citation(s) in RCA: 137] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2013] [Revised: 10/02/2013] [Accepted: 11/08/2013] [Indexed: 02/06/2023]
Abstract
The Drosophila sex pheromone cVA elicits different behaviors in males and females. First- and second-order olfactory neurons show identical pheromone responses, suggesting that sex genes differentially wire circuits deeper in the brain. Using in vivo whole-cell electrophysiology, we now show that two clusters of third-order olfactory neurons have dimorphic pheromone responses. One cluster responds in females; the other responds in males. These clusters are present in both sexes and share a common input pathway, but sex-specific wiring reroutes pheromone information. Regulating dendritic position, the fruitless transcription factor both connects the male-responsive cluster and disconnects the female-responsive cluster from pheromone input. Selective masculinization of third-order neurons transforms their morphology and pheromone responses, demonstrating that circuits can be functionally rewired by the cell-autonomous action of a switch gene. This bidirectional switch, analogous to an electrical changeover switch, provides a simple circuit logic to activate different behaviors in males and females.
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Affiliation(s)
- Johannes Kohl
- Division of Neurobiology, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
| | - Aaron D Ostrovsky
- Division of Neurobiology, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
| | - Shahar Frechter
- Division of Neurobiology, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
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98
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Kim WJ, Jan LY, Jan YN. A PDF/NPF neuropeptide signaling circuitry of male Drosophila melanogaster controls rival-induced prolonged mating. Neuron 2013; 80:1190-205. [PMID: 24314729 PMCID: PMC3867312 DOI: 10.1016/j.neuron.2013.09.034] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/17/2013] [Indexed: 12/21/2022]
Abstract
A primary function of males for many species involves mating with females for reproduction. Drosophila melanogaster males respond to the presence of other males by prolonging mating duration to increase the chance of passing on their genes. To understand the basis of such complex behaviors, we examine the genetic network and neural circuits that regulate rival-induced Longer-Mating-Duration (LMD). Here, we identify a small subset of clock neurons in the male brain that regulate LMD via neuropeptide signaling. LMD requires the function of pigment-dispersing factor (PDF) in four s-LNv neurons and its receptor PDFR in two LNd neurons per hemisphere, as well as the function of neuropeptide F (NPF) in two neurons within the sexually dimorphic LNd region and its receptor NPFR1 in four s-LNv neurons per hemisphere. Moreover, rival exposure modifies the neuronal activities of a subset of clock neurons involved in neuropeptide signaling for LMD.
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Affiliation(s)
- Woo Jae Kim
- Howard Hughes Medical Institute, Departments of Physiology, Biochemistry, and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA
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99
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Rectifying electrical synapses can affect the influence of synaptic modulation on output pattern robustness. J Neurosci 2013; 33:13238-48. [PMID: 23926276 DOI: 10.1523/jneurosci.0937-13.2013] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Rectifying electrical synapses are commonplace, but surprisingly little is known about how rectification alters the dynamics of neuronal networks. In this study, we use computational models to investigate how rectifying electrical synapses change the behavior of a small neuronal network that exhibits complex rhythmic output patterns. We begin with an electrically coupled circuit of three oscillatory neurons with different starting frequencies, and subsequently add two additional neurons and inhibitory chemical synapses. The five-cell model represents a pattern-generating neuronal network with two simultaneous rhythms competing for the recruitment of a hub neuron. We compare four different configurations of rectifying synapse placement and polarity, and we investigate how rectification changes the functional output of this network. Rectification can have a striking effect on the network's sensitivity to alterations of the strengths of the chemical synapses in the network. For some configurations, the rectification makes the circuit dynamics remarkably robust against changes in synaptic strength compared with the nonrectifying case. Based on our findings, we predict that modulation of rectifying electrical synapses could have functional consequences for the neuronal circuits that express them.
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100
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Green JWM, Snoek LB, Kammenga JE, Harvey SC. Genetic mapping of variation in dauer larvae development in growing populations of Caenorhabditis elegans. Heredity (Edinb) 2013; 111:306-13. [PMID: 23715016 PMCID: PMC3807260 DOI: 10.1038/hdy.2013.50] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2013] [Revised: 04/15/2013] [Accepted: 04/22/2013] [Indexed: 11/09/2022] Open
Abstract
In the nematode Caenorhabditis elegans, the appropriate induction of dauer larvae development within growing populations is likely to be a primary determinant of genotypic fitness. The underlying genetic architecture of natural genetic variation in dauer formation has, however, not been thoroughly investigated. Here, we report extensive natural genetic variation in dauer larvae development within growing populations across multiple wild isolates. Moreover, bin mapping of introgression lines (ILs) derived from the genetically divergent isolates N2 and CB4856 reveals 10 quantitative trait loci (QTLs) affecting dauer formation. Comparison of individual ILs to N2 identifies an additional eight QTLs, and sequential IL analysis reveals six more QTLs. Our results also show that a behavioural, laboratory-derived, mutation controlled by the neuropeptide Y receptor homolog npr-1 can affect dauer larvae development in growing populations. These findings illustrate the complex genetic architecture of variation in dauer larvae formation in C. elegans and may help to understand how the control of variation in dauer larvae development has evolved.
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Affiliation(s)
- J W M Green
- Ecology Research Group, Department of Geographical and Life Sciences, Canterbury Christ Church University, Canterbury, UK
| | - L B Snoek
- Laboratory of Nematology, Wageningen University, Wageningen, The Netherlands
| | - J E Kammenga
- Laboratory of Nematology, Wageningen University, Wageningen, The Netherlands
| | - S C Harvey
- Ecology Research Group, Department of Geographical and Life Sciences, Canterbury Christ Church University, Canterbury, UK
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