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For: Gallardo K, Firnhaber C, Zuber H, Héricher D, Belghazi M, Henry C, Küster H, Thompson R. A combined proteome and transcriptome analysis of developing Medicago truncatula seeds: evidence for metabolic specialization of maternal and filial tissues. Mol Cell Proteomics 2007;6:2165-79. [PMID: 17848586 DOI: 10.1074/mcp.m700171-mcp200] [Citation(s) in RCA: 165] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
Number Cited by Other Article(s)
51
Transcriptomics analysis of hulless barley during grain development with a focus on starch biosynthesis. Funct Integr Genomics 2016;17:107-117. [PMID: 27913887 PMCID: PMC5203864 DOI: 10.1007/s10142-016-0537-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Revised: 11/09/2016] [Accepted: 11/15/2016] [Indexed: 10/29/2022]
52
Analysis of Large Seeds from Three Different Medicago truncatula Ecotypes Reveals a Potential Role of Hormonal Balance in Final Size Determination of Legume Grains. Int J Mol Sci 2016;17:ijms17091472. [PMID: 27618017 PMCID: PMC5037750 DOI: 10.3390/ijms17091472] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Revised: 08/21/2016] [Accepted: 08/23/2016] [Indexed: 11/16/2022]  Open
53
Comas J, Benfeitas R, Vilaprinyo E, Sorribas A, Solsona F, Farré G, Berman J, Zorrilla U, Capell T, Sandmann G, Zhu C, Christou P, Alves R. Identification of line-specific strategies for improving carotenoid production in synthetic maize through data-driven mathematical modeling. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2016;87:455-471. [PMID: 27155093 DOI: 10.1111/tpj.13210] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Revised: 04/25/2016] [Accepted: 04/29/2016] [Indexed: 06/05/2023]
54
Zhang F, Hua L, Fei J, Wang F, Liao Y, Fang W, Chen F, Teng N. Chromosome doubling to overcome the chrysanthemum cross barrier based on insight from transcriptomic and proteomic analyses. BMC Genomics 2016;17:585. [PMID: 27506621 PMCID: PMC4979184 DOI: 10.1186/s12864-016-2939-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Accepted: 07/14/2016] [Indexed: 12/05/2022]  Open
55
Oracz K, Stawska M. Cellular Recycling of Proteins in Seed Dormancy Alleviation and Germination. FRONTIERS IN PLANT SCIENCE 2016;7:1128. [PMID: 27512405 PMCID: PMC4961694 DOI: 10.3389/fpls.2016.01128] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2016] [Accepted: 07/15/2016] [Indexed: 05/24/2023]
56
Parreira J, Bouraada J, Fitzpatrick M, Silvestre S, Bernardes da Silva A, Marques da Silva J, Almeida A, Fevereiro P, Altelaar A, Araújo S. Differential proteomics reveals the hallmarks of seed development in common bean ( Phaseolus vulgaris L.). J Proteomics 2016;143:188-198. [DOI: 10.1016/j.jprot.2016.03.002] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2016] [Revised: 02/29/2016] [Accepted: 03/01/2016] [Indexed: 12/12/2022]
57
Galili G, Amir R, Fernie AR. The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. ANNUAL REVIEW OF PLANT BIOLOGY 2016;67:153-78. [PMID: 26735064 DOI: 10.1146/annurev-arplant-043015-112213] [Citation(s) in RCA: 194] [Impact Index Per Article: 21.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
58
Jimenez-Lopez JC, Zienkiewicz A, Zienkiewicz K, Alché JD, Rodríguez-García MI. Biogenesis of protein bodies during legumin accumulation in developing olive (Olea europaea L.) seed. PROTOPLASMA 2016;253:517-30. [PMID: 25994087 DOI: 10.1007/s00709-015-0830-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2014] [Accepted: 05/07/2015] [Indexed: 05/15/2023]
59
Wang L, Fu J, Li M, Fragner L, Weckwerth W, Yang P. Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera). FRONTIERS IN PLANT SCIENCE 2016;7:750. [PMID: 27375629 PMCID: PMC4894879 DOI: 10.3389/fpls.2016.00750] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Accepted: 05/17/2016] [Indexed: 05/20/2023]
60
Kang Y, Li M, Sinharoy S, Verdier J. A Snapshot of Functional Genetic Studies in Medicago truncatula. FRONTIERS IN PLANT SCIENCE 2016;7:1175. [PMID: 27555857 PMCID: PMC4977297 DOI: 10.3389/fpls.2016.01175] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2016] [Accepted: 07/21/2016] [Indexed: 05/21/2023]
61
Rathi D, Gayen D, Gayali S, Chakraborty S, Chakraborty N. Legume proteomics: Progress, prospects, and challenges. Proteomics 2015;16:310-27. [DOI: 10.1002/pmic.201500257] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Revised: 09/19/2015] [Accepted: 11/05/2015] [Indexed: 11/10/2022]
62
Ghan R, Van Sluyter SC, Hochberg U, Degu A, Hopper DW, Tillet RL, Schlauch KA, Haynes PA, Fait A, Cramer GR. Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars. BMC Genomics 2015;16:946. [PMID: 26573226 PMCID: PMC4647476 DOI: 10.1186/s12864-015-2115-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2015] [Accepted: 10/20/2015] [Indexed: 11/23/2022]  Open
63
Lambirth KC, Whaley AM, Blakley IC, Schlueter JA, Bost KL, Loraine AE, Piller KJ. A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq. BMC Biotechnol 2015;15:89. [PMID: 26427366 PMCID: PMC4591623 DOI: 10.1186/s12896-015-0207-z] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2015] [Accepted: 09/22/2015] [Indexed: 12/14/2022]  Open
64
Alves-Carvalho S, Aubert G, Carrère S, Cruaud C, Brochot AL, Jacquin F, Klein A, Martin C, Boucherot K, Kreplak J, da Silva C, Moreau S, Gamas P, Wincker P, Gouzy J, Burstin J. Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2015;84:1-19. [PMID: 26296678 DOI: 10.1111/tpj.12967] [Citation(s) in RCA: 114] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2015] [Revised: 07/09/2015] [Accepted: 07/16/2015] [Indexed: 05/21/2023]
65
Garcia CB, Grusak MA. Mineral accumulation in vegetative and reproductive tissues during seed development in Medicago truncatula. FRONTIERS IN PLANT SCIENCE 2015;6:622. [PMID: 26322063 PMCID: PMC4536387 DOI: 10.3389/fpls.2015.00622] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2015] [Accepted: 07/27/2015] [Indexed: 05/29/2023]
66
Li Q, Zhang S, Wang J. Transcriptomic and proteomic analyses of embryogenic tissues in Picea balfouriana treated with 6-benzylaminopurine. PHYSIOLOGIA PLANTARUM 2015;154:95-113. [PMID: 25200684 DOI: 10.1111/ppl.12276] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2014] [Revised: 07/07/2014] [Accepted: 07/29/2014] [Indexed: 05/22/2023]
67
Gupta S, Garg V, Bhatia S. A new set of ESTs from chickpea (Cicer arietinum L.) embryo reveals two novel F-box genes, CarF-box_PP2 and CarF-box_LysM, with potential roles in seed development. PLoS One 2015;10:e0121100. [PMID: 25803812 PMCID: PMC4372429 DOI: 10.1371/journal.pone.0121100] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Accepted: 02/09/2015] [Indexed: 11/18/2022]  Open
68
Proteome analysis of dormancy-released seeds of Fraxinus mandshurica Rupr. in response to re-dehydration under different conditions. Int J Mol Sci 2015;16:4713-30. [PMID: 25739084 PMCID: PMC4394444 DOI: 10.3390/ijms16034713] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2015] [Revised: 02/09/2015] [Accepted: 02/17/2015] [Indexed: 01/18/2023]  Open
69
Noguero M, Le Signor C, Vernoud V, Bandyopadhyay K, Sanchez M, Fu C, Torres-Jerez I, Wen J, Mysore KS, Gallardo K, Udvardi M, Thompson R, Verdier J. DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2015;81:453-66. [PMID: 25492260 PMCID: PMC4329604 DOI: 10.1111/tpj.12742] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2014] [Revised: 11/30/2014] [Accepted: 12/02/2014] [Indexed: 05/18/2023]
70
Li L, Hur M, Lee JY, Zhou W, Song Z, Ransom N, Demirkale CY, Nettleton D, Westgate M, Arendsee Z, Iyer V, Shanks J, Nikolau B, Wurtele ES. A systems biology approach toward understanding seed composition in soybean. BMC Genomics 2015;16 Suppl 3:S9. [PMID: 25708381 PMCID: PMC4331812 DOI: 10.1186/1471-2164-16-s3-s9] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
71
Lafuente A, Pérez-Palacios P, Doukkali B, Molina-Sánchez MD, Jiménez-Zurdo JI, Caviedes MA, Rodríguez-Llorente ID, Pajuelo E. Unraveling the effect of arsenic on the model Medicago-Ensifer interaction: a transcriptomic meta-analysis. THE NEW PHYTOLOGIST 2015;205:255-272. [PMID: 25252248 DOI: 10.1111/nph.13009] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Accepted: 07/25/2014] [Indexed: 06/03/2023]
72
Wang WQ, Liu SJ, Song SQ, Møller IM. Proteomics of seed development, desiccation tolerance, germination and vigor. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2015;86:1-15. [PMID: 25461695 DOI: 10.1016/j.plaphy.2014.11.003] [Citation(s) in RCA: 94] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Accepted: 11/03/2014] [Indexed: 05/19/2023]
73
Liu N, Zhang G, Xu S, Mao W, Hu Q, Gong Y. Comparative Transcriptomic Analyses of Vegetable and Grain Pea (Pisum sativum L.) Seed Development. FRONTIERS IN PLANT SCIENCE 2015;6:1039. [PMID: 26635856 PMCID: PMC4658420 DOI: 10.3389/fpls.2015.01039] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2015] [Accepted: 11/09/2015] [Indexed: 05/19/2023]
74
Frank A, Cohen H, Hoffman D, Amir R. Methionine and S-methylmethionine exhibit temporal and spatial accumulation patterns during the Arabidopsis life cycle. Amino Acids 2014;47:497-510. [PMID: 25488426 DOI: 10.1007/s00726-014-1881-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Accepted: 11/18/2014] [Indexed: 11/26/2022]
75
Morisaki A, Yamada N, Yamanaka S, Matsui K. Dimethyl sulfide as a source of the seaweed-like aroma in cooked soybeans and correlation with its precursor, S-methylmethionine (vitamin U). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014;62:8289-94. [PMID: 25090616 DOI: 10.1021/jf501614j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
76
Soares EL, Shah M, Soares AA, Costa JH, Carvalho P, Domont GB, Nogueira FCS, Campos FAP. Proteome analysis of the inner integument from developing Jatropha curcas L. seeds. J Proteome Res 2014;13:3562-70. [PMID: 25010673 DOI: 10.1021/pr5004505] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
77
Staszak AM, Pawłowski TA. Proteomic analysis of embryogenesis and the acquisition of seed dormancy in Norway maple (Acer platanoides L.). Int J Mol Sci 2014;15:10868-91. [PMID: 24941250 PMCID: PMC4100186 DOI: 10.3390/ijms150610868] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Revised: 05/16/2014] [Accepted: 05/30/2014] [Indexed: 12/16/2022]  Open
78
Tegeder M. Transporters involved in source to sink partitioning of amino acids and ureides: opportunities for crop improvement. JOURNAL OF EXPERIMENTAL BOTANY 2014;65:1865-78. [PMID: 24489071 DOI: 10.1093/jxb/eru012] [Citation(s) in RCA: 141] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
79
Liu T, Chen JA, Wang W, Simon M, Wu F, Hu W, Chen JB, Zheng H. A combined proteomic and transcriptomic analysis on sulfur metabolism pathways of Arabidopsis thaliana under simulated acid rain. PLoS One 2014;9:e90120. [PMID: 24595051 PMCID: PMC3940841 DOI: 10.1371/journal.pone.0090120] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2013] [Accepted: 01/27/2014] [Indexed: 11/30/2022]  Open
80
D'Hooghe P, Dubousset L, Gallardo K, Kopriva S, Avice JC, Trouverie J. Evidence for proteomic and metabolic adaptations associated with alterations of seed yield and quality in sulfur-limited Brassica napus L. Mol Cell Proteomics 2014;13:1165-83. [PMID: 24554741 DOI: 10.1074/mcp.m113.034215] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
81
Teyssier C, Maury S, Beaufour M, Grondin C, Delaunay A, Le Metté C, Ader K, Cadene M, Label P, Lelu-Walter MA. In search of markers for somatic embryo maturation in hybrid larch (Larix × eurolepis): global DNA methylation and proteomic analyses. PHYSIOLOGIA PLANTARUM 2014;150:271-91. [PMID: 23789891 DOI: 10.1111/ppl.12081] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2013] [Revised: 04/08/2013] [Accepted: 05/28/2013] [Indexed: 05/22/2023]
82
Pradhan S, Bandhiwal N, Shah N, Kant C, Gaur R, Bhatia S. Global transcriptome analysis of developing chickpea (Cicer arietinum L.) seeds. FRONTIERS IN PLANT SCIENCE 2014;5:698. [PMID: 25566273 PMCID: PMC4267183 DOI: 10.3389/fpls.2014.00698] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Accepted: 11/24/2014] [Indexed: 05/20/2023]
83
Smýkal P, Vernoud V, Blair MW, Soukup A, Thompson RD. The role of the testa during development and in establishment of dormancy of the legume seed. FRONTIERS IN PLANT SCIENCE 2014;5:351. [PMID: 25101104 PMCID: PMC4102250 DOI: 10.3389/fpls.2014.00351] [Citation(s) in RCA: 82] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2014] [Accepted: 06/30/2014] [Indexed: 05/19/2023]
84
Wang WQ, Ye JQ, Rogowska-Wrzesinska A, Wojdyla KI, Jensen ON, Møller IM, Song SQ. Proteomic Comparison between Maturation Drying and Prematurely Imposed Drying of Zea mays Seeds Reveals a Potential Role of Maturation Drying in Preparing Proteins for Seed Germination, Seedling Vigor, and Pathogen Resistance. J Proteome Res 2013;13:606-26. [DOI: 10.1021/pr4007574] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
85
Matityahu I, Godo I, Hacham Y, Amir R. Tobacco seeds expressing feedback-insensitive cystathionine gamma-synthase exhibit elevated content of methionine and altered primary metabolic profile. BMC PLANT BIOLOGY 2013;13:206. [PMID: 24314105 PMCID: PMC3878949 DOI: 10.1186/1471-2229-13-206] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2013] [Accepted: 12/03/2013] [Indexed: 05/03/2023]
86
Zuber H, Poignavent G, Le Signor C, Aimé D, Vieren E, Tadla C, Lugan R, Belghazi M, Labas V, Santoni AL, Wipf D, Buitink J, Avice JC, Salon C, Gallardo K. Legume adaptation to sulfur deficiency revealed by comparing nutrient allocation and seed traits in Medicago truncatula. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2013;76:982-96. [PMID: 24118112 DOI: 10.1111/tpj.12350] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2013] [Revised: 09/27/2013] [Accepted: 10/08/2013] [Indexed: 05/11/2023]
87
Wang J, Lan P, Gao H, Zheng L, Li W, Schmidt W. Expression changes of ribosomal proteins in phosphate- and iron-deficient Arabidopsis roots predict stress-specific alterations in ribosome composition. BMC Genomics 2013;14:783. [PMID: 24225185 PMCID: PMC3830539 DOI: 10.1186/1471-2164-14-783] [Citation(s) in RCA: 97] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2013] [Accepted: 11/11/2013] [Indexed: 12/22/2022]  Open
88
Zhu W, Zhang E, Li H, Chen X, Zhu F, Hong Y, Liao B, Liu S, Liang X. Comparative proteomics analysis of developing peanut aerial and subterranean pods identifies pod swelling related proteins. J Proteomics 2013;91:172-87. [DOI: 10.1016/j.jprot.2013.07.002] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2013] [Revised: 06/29/2013] [Accepted: 07/01/2013] [Indexed: 11/15/2022]
89
Qu C, Fu F, Lu K, Zhang K, Wang R, Xu X, Wang M, Lu J, Wan H, Zhanglin T, Li J. Differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded Brassica napus. JOURNAL OF EXPERIMENTAL BOTANY 2013;64:2885-98. [PMID: 23698630 PMCID: PMC3697950 DOI: 10.1093/jxb/ert148] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
90
White BL, Gökce E, Nepomuceno AI, Muddiman DC, Sanders TH, Davis JP. Comparative proteomic analysis and IgE binding properties of peanut seed and testa (skin). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2013;61:3957-3968. [PMID: 23534881 DOI: 10.1021/jf400184y] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
91
Song S, Hou W, Godo I, Wu C, Yu Y, Matityahu I, Hacham Y, Sun S, Han T, Amir R. Soybean seeds expressing feedback-insensitive cystathionine γ-synthase exhibit a higher content of methionine. JOURNAL OF EXPERIMENTAL BOTANY 2013;64:1917-26. [PMID: 23530130 DOI: 10.1093/jxb/ert053] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
92
Verdier J, Dessaint F, Schneider C, Abirached-Darmency M. A combined histology and transcriptome analysis unravels novel questions on Medicago truncatula seed coat. JOURNAL OF EXPERIMENTAL BOTANY 2013;64:459-70. [PMID: 23125357 PMCID: PMC3542040 DOI: 10.1093/jxb/ers304] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
93
Liu TW, Niu L, Fu B, Chen J, Wu FH, Chen J, Wang WH, Hu WJ, He JX, Zheng HL. A transcriptomic study reveals differentially expressed genes and pathways respond to simulated acid rain in Arabidopsis thaliana. Genome 2013;56:49-60. [PMID: 23379338 DOI: 10.1139/gen-2012-0090] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
94
Silva-Sanchez C, Chen S, Zhu N, Li QB, Chourey PS. Proteomic comparison of basal endosperm in maize miniature1 mutant and its wild-type Mn1. FRONTIERS IN PLANT SCIENCE 2013;4:211. [PMID: 23805148 PMCID: PMC3691554 DOI: 10.3389/fpls.2013.00211] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Accepted: 06/03/2013] [Indexed: 05/08/2023]
95
Barvkar VT, Pardeshi VC, Kale SM, Kadoo NY, Giri AP, Gupta VS. Proteome profiling of flax (Linum usitatissimum) seed: characterization of functional metabolic pathways operating during seed development. J Proteome Res 2012;11:6264-76. [PMID: 23153172 DOI: 10.1021/pr300984r] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
96
D'Erfurth I, Le Signor C, Aubert G, Sanchez M, Vernoud V, Darchy B, Lherminier J, Bourion V, Bouteiller N, Bendahmane A, Buitink J, Prosperi JM, Thompson R, Burstin J, Gallardo K. A role for an endosperm-localized subtilase in the control of seed size in legumes. THE NEW PHYTOLOGIST 2012;196:738-751. [PMID: 22985172 DOI: 10.1111/j.1469-8137.2012.04296.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2012] [Accepted: 07/25/2012] [Indexed: 05/08/2023]
97
Abirached-Darmency M, Dessaint F, Benlicha E, Schneider C. Biogenesis of protein bodies during vicilin accumulation in Medicago truncatula immature seeds. BMC Res Notes 2012;5:409. [PMID: 22862819 PMCID: PMC3431269 DOI: 10.1186/1756-0500-5-409] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2012] [Accepted: 07/17/2012] [Indexed: 12/05/2022]  Open
98
Murine macrophages response to iron. J Proteomics 2012;76 Spec No.:10-27. [PMID: 22835775 DOI: 10.1016/j.jprot.2012.07.018] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2012] [Revised: 06/20/2012] [Accepted: 07/15/2012] [Indexed: 12/17/2022]
99
Impact of Molecular Technologies on Faba Bean (Vicia faba L.) Breeding Strategies. AGRONOMY-BASEL 2012. [DOI: 10.3390/agronomy2030132] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
100
Yu HD, Yang XF, Chen ST, Wang YT, Li JK, Shen Q, Liu XL, Guo FQ. Downregulation of chloroplast RPS1 negatively modulates nuclear heat-responsive expression of HsfA2 and its target genes in Arabidopsis. PLoS Genet 2012;8:e1002669. [PMID: 22570631 PMCID: PMC3342936 DOI: 10.1371/journal.pgen.1002669] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2011] [Accepted: 03/08/2012] [Indexed: 12/11/2022]  Open
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