• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5078629)   Today's Articles (1395)
For: Huang X, Pearce R, Zhang Y. FASPR: an open-source tool for fast and accurate protein side-chain packing. Bioinformatics 2020;36:3758-3765. [PMID: 32259206 DOI: 10.1093/bioinformatics/btaa234] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Revised: 03/30/2020] [Accepted: 04/01/2020] [Indexed: 01/04/2023]  Open
Number Cited by Other Article(s)
51
Zheng W, Zhang C, Li Y, Pearce R, Bell EW, Zhang Y. Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. CELL REPORTS METHODS 2021;1:100014. [PMID: 34355210 PMCID: PMC8336924 DOI: 10.1016/j.crmeth.2021.100014] [Citation(s) in RCA: 299] [Impact Index Per Article: 74.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Revised: 04/22/2021] [Accepted: 05/03/2021] [Indexed: 12/23/2022]
52
Suh D, Lee JW, Choi S, Lee Y. Recent Applications of Deep Learning Methods on Evolution- and Contact-Based Protein Structure Prediction. Int J Mol Sci 2021;22:6032. [PMID: 34199677 PMCID: PMC8199773 DOI: 10.3390/ijms22116032] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Revised: 05/29/2021] [Accepted: 05/29/2021] [Indexed: 01/23/2023]  Open
53
Protein Structure Prediction: Conventional and Deep Learning Perspectives. Protein J 2021;40:522-544. [PMID: 34050498 DOI: 10.1007/s10930-021-10003-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/21/2021] [Indexed: 10/21/2022]
54
Xu G, Wang Q, Ma J. OPUS-Rota3: Improving Protein Side-Chain Modeling by Deep Neural Networks and Ensemble Methods. J Chem Inf Model 2020;60:6691-6697. [PMID: 33211480 DOI: 10.1021/acs.jcim.0c00951] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
55
Huang X, Zhang C, Pearce R, Omenn GS, Zhang Y. Identifying the Zoonotic Origin of SARS-CoV-2 by Modeling the Binding Affinity between the Spike Receptor-Binding Domain and Host ACE2. J Proteome Res 2020;19:4844-4856. [PMID: 33175551 PMCID: PMC7770890 DOI: 10.1021/acs.jproteome.0c00717] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Indexed: 12/14/2022]
56
Hameduh T, Haddad Y, Adam V, Heger Z. Homology modeling in the time of collective and artificial intelligence. Comput Struct Biotechnol J 2020;18:3494-3506. [PMID: 33304450 PMCID: PMC7695898 DOI: 10.1016/j.csbj.2020.11.007] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 11/04/2020] [Accepted: 11/04/2020] [Indexed: 12/12/2022]  Open
57
Zhou X, Li Y, Zhang C, Zheng W, Zhang G, Zhang Y. Progressive and accurate assembly of multi-domain protein structures from cryo-EM density maps. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2020:2020.10.15.340455. [PMID: 33083802 PMCID: PMC7574260 DOI: 10.1101/2020.10.15.340455] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
58
Huang X, Zhang C, Pearce R, Omenn GS, Zhang Y. Identifying zoonotic origin of SARS-CoV-2 by modeling the binding affinity between Spike receptor-binding domain and host ACE2. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2020:2020.09.11.293449. [PMID: 32935105 PMCID: PMC7491519 DOI: 10.1101/2020.09.11.293449] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
PrevPage 2 of 2 12Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA