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Lipshutz D, Pehlevan C, Chklovskii DB. Biologically plausible single-layer networks for nonnegative independent component analysis. BIOLOGICAL CYBERNETICS 2022; 116:557-568. [PMID: 36070103 DOI: 10.1007/s00422-022-00943-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 08/18/2022] [Indexed: 06/15/2023]
Abstract
An important problem in neuroscience is to understand how brains extract relevant signals from mixtures of unknown sources, i.e., perform blind source separation. To model how the brain performs this task, we seek a biologically plausible single-layer neural network implementation of a blind source separation algorithm. For biological plausibility, we require the network to satisfy the following three basic properties of neuronal circuits: (i) the network operates in the online setting; (ii) synaptic learning rules are local; and (iii) neuronal outputs are nonnegative. Closest is the work by Pehlevan et al. (Neural Comput 29:2925-2954, 2017), which considers nonnegative independent component analysis (NICA), a special case of blind source separation that assumes the mixture is a linear combination of uncorrelated, nonnegative sources. They derive an algorithm with a biologically plausible 2-layer network implementation. In this work, we improve upon their result by deriving 2 algorithms for NICA, each with a biologically plausible single-layer network implementation. The first algorithm maps onto a network with indirect lateral connections mediated by interneurons. The second algorithm maps onto a network with direct lateral connections and multi-compartmental output neurons.
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Affiliation(s)
- David Lipshutz
- Center for Computational Neuroscience, Flatiron Institute, New York, USA.
| | - Cengiz Pehlevan
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, USA
| | - Dmitri B Chklovskii
- Center for Computational Neuroscience, Flatiron Institute, New York, USA
- Neuroscience Institute, NYU Medical Center, New York, USA
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Wang Y, Gill JP, Chiel HJ, Thomas PJ. Variational and phase response analysis for limit cycles with hard boundaries, with applications to neuromechanical control problems. BIOLOGICAL CYBERNETICS 2022; 116:687-710. [PMID: 36396795 PMCID: PMC9691512 DOI: 10.1007/s00422-022-00951-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 10/17/2022] [Indexed: 06/16/2023]
Abstract
Motor systems show an overall robustness, but because they are highly nonlinear, understanding how they achieve robustness is difficult. In many rhythmic systems, robustness against perturbations involves response of both the shape and the timing of the trajectory. This makes the study of robustness even more challenging. To understand how a motor system produces robust behaviors in a variable environment, we consider a neuromechanical model of motor patterns in the feeding apparatus of the marine mollusk Aplysia californica (Shaw et al. in J Comput Neurosci 38(1):25-51, 2015; Lyttle et al. in Biol Cybern 111(1):25-47, 2017). We established in (Wang et al. in SIAM J Appl Dyn Syst 20(2):701-744, 2021. https://doi.org/10.1137/20M1344974 ) the tools for studying combined shape and timing responses of limit cycle systems under sustained perturbations and here apply them to study robustness of the neuromechanical model against increased mechanical load during swallowing. Interestingly, we discover that nonlinear biomechanical properties confer resilience by immediately increasing resistance to applied loads. In contrast, the effect of changed sensory feedback signal is significantly delayed by the firing rates' hard boundary properties. Our analysis suggests that sensory feedback contributes to robustness in swallowing primarily by shifting the timing of neural activation involved in the power stroke of the motor cycle (retraction). This effect enables the system to generate stronger retractor muscle forces to compensate for the increased load, and hence achieve strong robustness. The approaches that we are applying to understanding a neuromechanical model in Aplysia, and the results that we have obtained, are likely to provide insights into the function of other motor systems that encounter changing mechanical loads and hard boundaries, both due to mechanical and neuronal firing properties.
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Affiliation(s)
- Yangyang Wang
- Department of Mathematics, The University of Iowa, Iowa City, IA 52242 USA
| | - Jeffrey P. Gill
- Department of Biology, Case Western Reserve University, Cleveland, OH 44106 USA
| | - Hillel J. Chiel
- Department of Biology, Case Western Reserve University, Cleveland, OH 44106 USA
- Department of Neurosciences, Case Western Reserve University, Cleveland, OH 44106 USA
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH 44106 USA
| | - Peter J. Thomas
- Departments of Mathematics, Applied Mathematics, and Statistics, Case Western Reserve University, Cleveland, OH 44106 USA
- Department of Biology, Case Western Reserve University, Cleveland, OH 44106 USA
- Department of Cognitive Science, Case Western Reserve University, Cleveland, OH 44106 USA
- Department of Data and Computer Science, Case Western Reserve University, Cleveland, OH 44106 USA
- Department of Electrical, Control and Systems Engineering, Case Western Reserve University, Cleveland, OH 44106 USA
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Jang YH, Kim H, Lee JY, Ahn JH, Chung AW, Lee HJ. Altered development of structural MRI connectome hubs at near-term age in very and moderately preterm infants. Cereb Cortex 2022; 33:5507-5523. [PMID: 36408630 DOI: 10.1093/cercor/bhac438] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2022] [Revised: 10/04/2022] [Accepted: 10/05/2022] [Indexed: 11/22/2022] Open
Abstract
Abstract
Preterm infants may exhibit altered developmental patterns of the brain structural network by endogenous and exogenous stimuli, which are quantifiable through hub and modular network topologies that develop in the third trimester. Although preterm brain networks can compensate for white matter microstructural abnormalities of core connections, less is known about how the network developmental characteristics of preterm infants differ from those of full-term infants. We identified 13 hubs and 4 modules and revealed subtle differences in edgewise connectivity and local network properties between 134 preterm and 76 full-term infants, identifying specific developmental patterns of the brain structural network in preterm infants. The modules of preterm infants showed an imbalanced composition. The edgewise connectivity in preterm infants showed significantly decreased long- and short-range connections and local network properties in the dorsal superior frontal gyrus. In contrast, the fusiform gyrus and several nonhub regions showed significantly increased wiring of short-range connections and local network properties. Our results suggested that decreased local network in the frontal lobe and excessive development in the occipital lobe may contribute to the understanding of brain developmental deviances in preterm infants.
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Affiliation(s)
- Yong Hun Jang
- Hanyang University Graduate School of Biomedical Science and Engineering Department of Translational Medicine, , Seoul 04763 , Republic of Korea
| | - Hyuna Kim
- Hanyang University Graduate School of Biomedical Science and Engineering Department of Translational Medicine, , Seoul 04763 , Republic of Korea
| | - Joo Young Lee
- Hanyang University Graduate School of Biomedical Science and Engineering Department of Translational Medicine, , Seoul 04763 , Republic of Korea
| | - Ja-Hye Ahn
- Hanyang University College of Medicine Department of Pediatrics, Hanyang University Hospital, , Seoul 04763 , Republic of Korea
| | - Ai Wern Chung
- Harvard Medical School Fetal Neonatal-Neuroimaging and Developmental Science Center, Boston Children’s Hospital, , Boston, MA 02115 , USA
- Harvard Medical School Department of Pediatrics, Boston Children’s Hospital, , Boston, MA 02115 , USA
| | - Hyun Ju Lee
- Hanyang University College of Medicine Department of Pediatrics, Hanyang University Hospital, , Seoul 04763 , Republic of Korea
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Wu J, Xu C, Han X, Zhou D, Zhang M, Li H, Tan KC. Progressive Tandem Learning for Pattern Recognition With Deep Spiking Neural Networks. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE 2022; 44:7824-7840. [PMID: 34546918 DOI: 10.1109/tpami.2021.3114196] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Spiking neural networks (SNNs) have shown clear advantages over traditional artificial neural networks (ANNs) for low latency and high computational efficiency, due to their event-driven nature and sparse communication. However, the training of deep SNNs is not straightforward. In this paper, we propose a novel ANN-to-SNN conversion and layer-wise learning framework for rapid and efficient pattern recognition, which is referred to as progressive tandem learning. By studying the equivalence between ANNs and SNNs in the discrete representation space, a primitive network conversion method is introduced that takes full advantage of spike count to approximate the activation value of ANN neurons. To compensate for the approximation errors arising from the primitive network conversion, we further introduce a layer-wise learning method with an adaptive training scheduler to fine-tune the network weights. The progressive tandem learning framework also allows hardware constraints, such as limited weight precision and fan-in connections, to be progressively imposed during training. The SNNs thus trained have demonstrated remarkable classification and regression capabilities on large-scale object recognition, image reconstruction, and speech separation tasks, while requiring at least an order of magnitude reduced inference time and synaptic operations than other state-of-the-art SNN implementations. It, therefore, opens up a myriad of opportunities for pervasive mobile and embedded devices with a limited power budget.
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Unraveling the functional attributes of the language connectome: crucial subnetworks, flexibility and variability. Neuroimage 2022; 263:119672. [PMID: 36209795 DOI: 10.1016/j.neuroimage.2022.119672] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 10/04/2022] [Accepted: 10/05/2022] [Indexed: 11/23/2022] Open
Abstract
Language processing is a highly integrative function, intertwining linguistic operations (processing the language code intentionally used for communication) and extra-linguistic processes (e.g., attention monitoring, predictive inference, long-term memory). This synergetic cognitive architecture requires a distributed and specialized neural substrate. Brain systems have mainly been examined at rest. However, task-related functional connectivity provides additional and valuable information about how information is processed when various cognitive states are involved. We gathered thirteen language fMRI tasks in a unique database of one hundred and fifty neurotypical adults (InLang [Interactive networks of Language] database), providing the opportunity to assess language features across a wide range of linguistic processes. Using this database, we applied network theory as a computational tool to model the task-related functional connectome of language (LANG atlas). The organization of this data-driven neurocognitive atlas of language was examined at multiple levels, uncovering its major components (or crucial subnetworks), and its anatomical and functional correlates. In addition, we estimated its reconfiguration as a function of linguistic demand (flexibility) or several factors such as age or gender (variability). We observed that several discrete networks could be specifically shaped to promote key functional features of language: coding-decoding (Net1), control-executive (Net2), abstract-knowledge (Net3), and sensorimotor (Net4) functions. The architecture of these systems and the functional connectivity of the pivotal brain regions varied according to the nature of the linguistic process, gender, or age. By accounting for the multifaceted nature of language and modulating factors, this study can contribute to enriching and refining existing neurocognitive models of language. The LANG atlas can also be considered a reference for comparative or clinical studies involving various patients and conditions.
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Gansel KS. Neural synchrony in cortical networks: mechanisms and implications for neural information processing and coding. Front Integr Neurosci 2022; 16:900715. [PMID: 36262373 PMCID: PMC9574343 DOI: 10.3389/fnint.2022.900715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Accepted: 09/13/2022] [Indexed: 11/13/2022] Open
Abstract
Synchronization of neuronal discharges on the millisecond scale has long been recognized as a prevalent and functionally important attribute of neural activity. In this article, I review classical concepts and corresponding evidence of the mechanisms that govern the synchronization of distributed discharges in cortical networks and relate those mechanisms to their possible roles in coding and cognitive functions. To accommodate the need for a selective, directed synchronization of cells, I propose that synchronous firing of distributed neurons is a natural consequence of spike-timing-dependent plasticity (STDP) that associates cells repetitively receiving temporally coherent input: the “synchrony through synaptic plasticity” hypothesis. Neurons that are excited by a repeated sequence of synaptic inputs may learn to selectively respond to the onset of this sequence through synaptic plasticity. Multiple neurons receiving coherent input could thus actively synchronize their firing by learning to selectively respond at corresponding temporal positions. The hypothesis makes several predictions: first, the position of the cells in the network, as well as the source of their input signals, would be irrelevant as long as their input signals arrive simultaneously; second, repeating discharge patterns should get compressed until all or some part of the signals are synchronized; and third, this compression should be accompanied by a sparsening of signals. In this way, selective groups of cells could emerge that would respond to some recurring event with synchronous firing. Such a learned response pattern could further be modulated by synchronous network oscillations that provide a dynamic, flexible context for the synaptic integration of distributed signals. I conclude by suggesting experimental approaches to further test this new hypothesis.
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Wu C, Pu Y, Zhang Y, Liu X, Qiao Z, Xin N, Zhou T, Chen S, Zeng M, Tang J, Pi J, Wei D, Sun J, Luo F, Fan H. A Bioactive and Photoresponsive Platform for Wireless Electrical Stimulation to Promote Neurogenesis. Adv Healthc Mater 2022; 11:e2201255. [PMID: 35932207 DOI: 10.1002/adhm.202201255] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 07/14/2022] [Indexed: 02/05/2023]
Abstract
Delivering electrical signals to neural cells and tissue has attracted increasing attention in the treatment of nerve injuries. Unlike traditional wired electrical stimulation, wireless and remote light stimulation provides less invasive and longer-lasting interfaces, holding great promise in the treatment of nerve injuries and neurodegenerative diseases, as well as human-computer interaction. Additionally, a bioactive matrix that bridges the injured gap and induces nerve regeneration is essential for injured nerve repair. However, it is still challenging to construct a 3D biomimetic cell niche with optoelectrical responsiveness. Herein, a bioactive platform for remote and wireless optoelectrical stimulation is established by incorporating hydrophilic poly(3-hexylthiophene) nanoparticles (P3HT NPs) into a biomimetic hydrogel matrix. Moreover, the hydrogel matrix is modified by varying the composition and/or the crosslinking degree to meet the needs of different application scenarios. When exposed to pulsed green light, P3HT NPs in hydrogels convert light signals into electrical signals, resulting in the generation of tens of picoampere photocurrent, which is proved to promote the growth of cortical neurons that covered by hydrogels and the neuronal differentiation of bone marrow mesenchymal stem cells (BMSCs) encapsulated in hydrogels. This work is of great significance for the design of next-generation neural electrodes and scaffolds.
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Affiliation(s)
- Chengheng Wu
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China.,Institute of Regulatory Science for Medical Devices, Sichuan University, Chengdu, Sichuan, 610065, China
| | - Yiyao Pu
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Yusheng Zhang
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Xiaoyin Liu
- Department of Neurosurgery, West China School of Medicine, West China Hospital, Sichuan University, Chengdu, Sichuan, 610041, China
| | - Zi Qiao
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Nini Xin
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Ting Zhou
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Suping Chen
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Mingze Zeng
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Jiajia Tang
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Jinkui Pi
- Core Facilities of West China Hospital, Sichuan University, Chengdu, Sichuan, 610041, China
| | - Dan Wei
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Jing Sun
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
| | - Fang Luo
- The Center of Gerontology and Geriatrics, West China Hospital, Sichuan University, Chengdu, Sichuan, 610044, China
| | - Hongsong Fan
- National Engineering Research Center for Biomaterials, College of Biomedical Engineering, Sichuan University, Chengdu, Sichuan, 610064, China
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Parsons N, Ugon J, Morgan K, Shelyag S, Hocking A, Chan SY, Poudel G, Domìnguez D JF, Caeyenberghs K. Structural-Functional Connectivity Bandwidth of the Human Brain. Neuroimage 2022; 263:119659. [PMID: 36191756 DOI: 10.1016/j.neuroimage.2022.119659] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Revised: 09/25/2022] [Accepted: 09/29/2022] [Indexed: 11/26/2022] Open
Abstract
BACKGROUND The human brain is a complex network that seamlessly manifests behaviour and cognition. This network comprises neurons that directly, or indirectly mediate communication between brain regions. Here, we show how multilayer/multiplex network analysis provides a suitable framework to uncover the throughput of structural connectivity (SC) to mediate information transfer-giving rise to functional connectivity (FC). METHOD We implemented a novel method to reconcile SC and FC using diffusion and resting-state functional MRI connectivity data from 484 subjects (272 females, 212 males; age = 29.15 ± 3.47) from the Human Connectome Project. First, we counted the number of direct and indirect structural paths that mediate FC. FC nodes with indirect SC paths were then weighted according to their least restrictive SC path. We refer to this as SC-FC Bandwidth. We then mapped paths with the highest SC-FC Bandwidth across 7 canonical resting-state networks. FINDINGS We found that most pairs of FC nodes were connected by SC paths of length two and three (SC paths of length >5 were virtually non-existent). Direct SC-FC connections accounted for only 10% of all SC-FC connections. The majority of FC nodes without a direct SC path were mediated by a proportion of two (44%) or three SC path lengths (39%). Only a small proportion of FC nodes were mediated by SC path lengths of four (5%). We found high-bandwidth direct SC-FC connections show dense intra- and sparse inter-network connectivity, with a bilateral, anteroposterior distribution. High bandwidth SC-FC triangles have a right superomedial distribution within the somatomotor network. High-bandwidth SC-FC quads have a superoposterior distribution within the default mode network. CONCLUSION Our method allows the measurement of indirect SC-FC using undirected, weighted graphs derived from multimodal MRI data in order to map the location and throughput of SC to mediate FC. An extension of this work may be to explore how SC-FC Bandwidth changes over time, relates to cognition/behavior, and if this measure reflects a marker of neurological injury or psychiatric disorders.
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Affiliation(s)
- Nicholas Parsons
- Cognitive Neuroscience Unit, School of Psychology, Deakin University, Melbourne, VIC, Australia.
| | - Julien Ugon
- School of Information Technology, Faculty of Science Engineering & Built Environment, Deakin University, Melbourne, VIC, Australia
| | - Kerri Morgan
- School of Information Technology, Faculty of Science Engineering & Built Environment, Deakin University, Melbourne, VIC, Australia
| | - Sergiy Shelyag
- School of Information Technology, Faculty of Science Engineering & Built Environment, Deakin University, Melbourne, VIC, Australia
| | - Alex Hocking
- School of Information Technology, Faculty of Science Engineering & Built Environment, Deakin University, Melbourne, VIC, Australia
| | - Su Yuan Chan
- School of Information Technology, Faculty of Science Engineering & Built Environment, Deakin University, Melbourne, VIC, Australia
| | - Govinda Poudel
- School of Information Technology, Faculty of Science Engineering & Built Environment, Deakin University, Melbourne, VIC, Australia
| | - Juan F Domìnguez D
- Cognitive Neuroscience Unit, School of Psychology, Deakin University, Melbourne, VIC, Australia
| | - Karen Caeyenberghs
- Cognitive Neuroscience Unit, School of Psychology, Deakin University, Melbourne, VIC, Australia; Mary MacKillop Institute for Health Research, Australian Catholic University, Melbourne, VIC, Australia
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Jedlicka P, Tomko M, Robins A, Abraham WC. Contributions by metaplasticity to solving the Catastrophic Forgetting Problem. Trends Neurosci 2022; 45:656-666. [PMID: 35798611 DOI: 10.1016/j.tins.2022.06.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 06/06/2022] [Accepted: 06/09/2022] [Indexed: 10/17/2022]
Abstract
Catastrophic forgetting (CF) refers to the sudden and severe loss of prior information in learning systems when acquiring new information. CF has been an Achilles heel of standard artificial neural networks (ANNs) when learning multiple tasks sequentially. The brain, by contrast, has solved this problem during evolution. Modellers now use a variety of strategies to overcome CF, many of which have parallels to cellular and circuit functions in the brain. One common strategy, based on metaplasticity phenomena, controls the future rate of change at key connections to help retain previously learned information. However, the metaplasticity properties so far used are only a subset of those existing in neurobiology. We propose that as models become more sophisticated, there could be value in drawing on a richer set of metaplasticity rules, especially when promoting continual learning in agents moving about the environment.
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Affiliation(s)
- Peter Jedlicka
- ICAR3R - Interdisciplinary Centre for 3Rs in Animal Research, Faculty of Medicine, Justus Liebig University, Giessen, Germany; Institute of Clinical Neuroanatomy, Neuroscience Center, Goethe University Frankfurt, Frankfurt/Main, Germany; Frankfurt Institute for Advanced Studies, Frankfurt 60438, Germany.
| | - Matus Tomko
- ICAR3R - Interdisciplinary Centre for 3Rs in Animal Research, Faculty of Medicine, Justus Liebig University, Giessen, Germany; Institute of Molecular Physiology and Genetics, Centre of Biosciences, Slovak Academy of Sciences, Bratislava, Slovakia
| | - Anthony Robins
- Department of Computer Science, University of Otago, Dunedin 9016, New Zealand
| | - Wickliffe C Abraham
- Department of Psychology, Brain Health Research Centre, University of Otago, Dunedin 9054, New Zealand.
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Digital computing through randomness and order in neural networks. Proc Natl Acad Sci U S A 2022; 119:e2115335119. [PMID: 35947616 PMCID: PMC9388095 DOI: 10.1073/pnas.2115335119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We propose that coding and decoding in the brain are achieved through digital computation using three principles: relative ordinal coding of inputs, random connections between neurons, and belief voting. Due to randomization and despite the coarseness of the relative codes, we show that these principles are sufficient for coding and decoding sequences with error-free reconstruction. In particular, the number of neurons needed grows linearly with the size of the input repertoire growing exponentially. We illustrate our model by reconstructing sequences with repertoires on the order of a billion items. From this, we derive the Shannon equations for the capacity limit to learn and transfer information in the neural population, which is then generalized to any type of neural network. Following the maximum entropy principle of efficient coding, we show that random connections serve to decorrelate redundant information in incoming signals, creating more compact codes for neurons and therefore, conveying a larger amount of information. Henceforth, despite the unreliability of the relative codes, few neurons become necessary to discriminate the original signal without error. Finally, we discuss the significance of this digital computation model regarding neurobiological findings in the brain and more generally with artificial intelligence algorithms, with a view toward a neural information theory and the design of digital neural networks.
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61
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A new patterns of self-organization activity of brain: Neural energy coding. Inf Sci (N Y) 2022. [DOI: 10.1016/j.ins.2022.07.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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62
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Novotny E, Bente G. Identifying Signatures of Perceived Interpersonal Synchrony. JOURNAL OF NONVERBAL BEHAVIOR 2022; 46:485-517. [PMID: 35967988 PMCID: PMC9361934 DOI: 10.1007/s10919-022-00410-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/17/2022] [Indexed: 11/29/2022]
Abstract
Interpersonal synchrony serves as a subtle, yet powerful bonding mechanism in social interactions. Problematically, the term ‘synchrony’ has been used to label a variety of distinct aspects of interpersonal coordination, such as postural similarities or movement activity entrainment. Accordingly, different algorithms have been suggested to quantify interpersonal synchrony. Yet, it remains unknown whether the different measures of synchrony represent correlated features of the same perceivable core phenomenon. The current study addresses this by comparing the suitability of a set of algorithms with respect to their association with observers’ judgments of dyadic synchrony and leader-followership. One-hundred fifteen observers viewed computer animations of characters portraying the movements of real dyads who performed a repetitive motor task with instruction to move in unison. Animations were based on full-body motion capture data synchronously collected for both partners during the joint exercise. Results showed most synchrony measures significantly correlated with (a) perceived synchrony and (b) the perceived level of balance of leading/following by each dyad member. Phase synchrony and Pearson correlations were associated most strongly with the observer ratings. This might be typical for intentional, structured forms synchrony such as ritualized group activities. It remains open if these findings also apply to spontaneous forms of synchrony as, for instance, occurring in free-running conversations.
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Affiliation(s)
- Eric Novotny
- Grady College of Mass Communication and Journalism, University of Georgia, Athens, USA
| | - Gary Bente
- Department of Communication, Michigan State University, East Lansing, USA
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After 55 Years of Neurorehabilitation, What Is the Plan? Brain Sci 2022; 12:brainsci12080982. [PMID: 35892423 PMCID: PMC9330852 DOI: 10.3390/brainsci12080982] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 07/17/2022] [Accepted: 07/22/2022] [Indexed: 02/05/2023] Open
Abstract
Neurological disorders often cause severe long-term disabilities with substantial activity limitations and participation restrictions such as community integration, family functioning, employment, social interaction and participation. Increasing understanding of brain functioning has opened new perspectives for more integrative interventions, boosting the intrinsic central nervous system neuroplastic capabilities in order to achieve efficient behavioral restitution. Neurorehabilitation must take into account the many aspects of the individual through a comprehensive analysis of actual and potential cognitive, behavioral, emotional and physical skills, while increasing awareness and understanding of the new self of the person being dealt with. The exclusive adoption by the rehabilitator of objective functional measures often overlooks the values and goals of the disabled person. Indeed, each individual has their own rhythm, unique life history and personality construct. In this challenging context, it is essential to deepen the assessment through subjective measures, which more adequately reflect the patient’s perspective in order to shape genuinely tailored instead of standardized neurorehabilitation approaches. In this overly complex panorama, where confounding and prognostic factors also strongly influence potential functional recovery, the healthcare community needs to rethink neurorehabilitation formats.
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Seider NA, Adeyemo B, Miller R, Newbold DJ, Hampton JM, Scheidter KM, Rutlin J, Laumann TO, Roland JL, Montez DF, Van AN, Zheng A, Marek S, Kay BP, Bretthorst GL, Schlaggar BL, Greene DJ, Wang Y, Petersen SE, Barch DM, Gordon EM, Snyder AZ, Shimony JS, Dosenbach NUF. Accuracy and reliability of diffusion imaging models. Neuroimage 2022; 254:119138. [PMID: 35339687 PMCID: PMC9841915 DOI: 10.1016/j.neuroimage.2022.119138] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 03/01/2022] [Accepted: 03/22/2022] [Indexed: 01/19/2023] Open
Abstract
Diffusion imaging aims to non-invasively characterize the anatomy and integrity of the brain's white matter fibers. We evaluated the accuracy and reliability of commonly used diffusion imaging methods as a function of data quantity and analysis method, using both simulations and highly sampled individual-specific data (927-1442 diffusion weighted images [DWIs] per individual). Diffusion imaging methods that allow for crossing fibers (FSL's BedpostX [BPX], DSI Studio's Constant Solid Angle Q-Ball Imaging [CSA-QBI], MRtrix3's Constrained Spherical Deconvolution [CSD]) estimated excess fibers when insufficient data were present and/or when the data did not match the model priors. To reduce such overfitting, we developed a novel Bayesian Multi-tensor Model-selection (BaMM) method and applied it to the popular ball-and-stick model used in BedpostX within the FSL software package. BaMM was robust to overfitting and showed high reliability and the relatively best crossing-fiber accuracy with increasing amounts of diffusion data. Thus, sufficient data and an overfitting resistant analysis method enhance precision diffusion imaging. For potential clinical applications of diffusion imaging, such as neurosurgical planning and deep brain stimulation (DBS), the quantities of data required to achieve diffusion imaging reliability are lower than those needed for functional MRI.
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Affiliation(s)
- Nicole A Seider
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Babatunde Adeyemo
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Ryland Miller
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Dillan J Newbold
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Neurology, New York University Langone Medical Center, New York, NY 10016, United States of America
| | - Jacqueline M Hampton
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Kristen M Scheidter
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Jerrel Rutlin
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Timothy O Laumann
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Jarod L Roland
- Department of Neurological Surgery, Washington University School of Medicine, St Louis, MO 63110 United States of America
| | - David F Montez
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Andrew N Van
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Biomedical Engineering, Washington University in St Louis, St. Louis, MO 63110, United States of America
| | - Annie Zheng
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Scott Marek
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Benjamin P Kay
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - G Larry Bretthorst
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Chemistry, Washington University in St Louis, St. Louis, MO 63110, United States of America
| | - Bradley L Schlaggar
- Kennedy Krieger Institute, Baltimore, MD 21205, United States of America; Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21287, United States of America; Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD 21287, United States of America
| | - Deanna J Greene
- Department of Cognitive Science, University of California, San Diego, La Jolla, CA, United States of America
| | - Yong Wang
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Obstetrics and Gynecology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Biomedical Engineering, Washington University in St Louis, St. Louis, MO 63110, United States of America
| | - Steven E Petersen
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Biomedical Engineering, Washington University in St Louis, St. Louis, MO 63110, United States of America; Department of Neuroscience, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Psychological and Brain Sciences, Washington University in St. Louis, MO 63110, United States of America
| | - Deanna M Barch
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Psychological and Brain Sciences, Washington University in St. Louis, MO 63110, United States of America
| | - Evan M Gordon
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Abraham Z Snyder
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Joshua S Shimony
- Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Neuroscience, Washington University School of Medicine, St. Louis, MO 63110, United States of America
| | - Nico U F Dosenbach
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Mallinckrodt Institute of Radiology, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Biomedical Engineering, Washington University in St Louis, St. Louis, MO 63110, United States of America; Program in Occupational Therapy, Washington University School of Medicine, St. Louis, MO 63110, United States of America; Department of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110, United States of America
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65
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Jedlicka P, Bird AD, Cuntz H. Pareto optimality, economy-effectiveness trade-offs and ion channel degeneracy: improving population modelling for single neurons. Open Biol 2022; 12:220073. [PMID: 35857898 PMCID: PMC9277232 DOI: 10.1098/rsob.220073] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Neurons encounter unavoidable evolutionary trade-offs between multiple tasks. They must consume as little energy as possible while effectively fulfilling their functions. Cells displaying the best performance for such multi-task trade-offs are said to be Pareto optimal, with their ion channel configurations underpinning their functionality. Ion channel degeneracy, however, implies that multiple ion channel configurations can lead to functionally similar behaviour. Therefore, instead of a single model, neuroscientists often use populations of models with distinct combinations of ionic conductances. This approach is called population (database or ensemble) modelling. It remains unclear, which ion channel parameters in the vast population of functional models are more likely to be found in the brain. Here we argue that Pareto optimality can serve as a guiding principle for addressing this issue by helping to identify the subpopulations of conductance-based models that perform best for the trade-off between economy and functionality. In this way, the high-dimensional parameter space of neuronal models might be reduced to geometrically simple low-dimensional manifolds, potentially explaining experimentally observed ion channel correlations. Conversely, Pareto inference might also help deduce neuronal functions from high-dimensional Patch-seq data. In summary, Pareto optimality is a promising framework for improving population modelling of neurons and their circuits.
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Affiliation(s)
- Peter Jedlicka
- ICAR3R - Interdisciplinary Centre for 3Rs in Animal Research, Faculty of Medicine, Justus-Liebig-University, Giessen, Germany,Institute of Clinical Neuroanatomy, Neuroscience Center, Goethe University, Frankfurt/Main, Germany,Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany
| | - Alexander D. Bird
- ICAR3R - Interdisciplinary Centre for 3Rs in Animal Research, Faculty of Medicine, Justus-Liebig-University, Giessen, Germany,Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany,Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, Frankfurt am Main, Germany
| | - Hermann Cuntz
- Frankfurt Institute for Advanced Studies, Frankfurt am Main, Germany,Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, Frankfurt am Main, Germany
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66
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Sandamirskaya Y, Kaboli M, Conradt J, Celikel T. Neuromorphic computing hardware and neural architectures for robotics. Sci Robot 2022; 7:eabl8419. [PMID: 35767646 DOI: 10.1126/scirobotics.abl8419] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Neuromorphic hardware enables fast and power-efficient neural network-based artificial intelligence that is well suited to solving robotic tasks. Neuromorphic algorithms can be further developed following neural computing principles and neural network architectures inspired by biological neural systems. In this Viewpoint, we provide an overview of recent insights from neuroscience that could enhance signal processing in artificial neural networks on chip and unlock innovative applications in robotics and autonomous intelligent systems. These insights uncover computing principles, primitives, and algorithms on different levels of abstraction and call for more research into the basis of neural computation and neuronally inspired computing hardware.
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Affiliation(s)
| | - Mohsen Kaboli
- BMW Group, Department of Research, New Technologies and Innovation, Munich, Germany.,Donders Institute for Brain, Cognition, and Behavior, Radboud University, Nijmegen, Netherlands
| | - Jorg Conradt
- Kungliga Tekniska Högskolan (KTH), School of Electrical Engineering and Computer Science, Stockholm, Sweden
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67
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Abstract
The nematode worm Caenorhabditis elegans has a relatively simple neural system for analysis of information transmission from sensory organ to muscle fiber. Consequently, this study includes an example of a neural circuit from the nematode worm, and a procedure is shown for measuring its information optimality by use of a logic gate model. This approach is useful where the assumptions are applicable for a neural circuit, and also for choosing between competing mathematical hypotheses that explain the function of a neural circuit. In this latter case, the logic gate model can estimate computational complexity and distinguish which of the mathematical models require fewer computations. In addition, the concept of information optimality is generalized to other biological systems, along with an extended discussion of its role in genetic-based pathways of organisms.
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68
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Krichmar JL, Hwu TJ. Design Principles for Neurorobotics. Front Neurorobot 2022; 16:882518. [PMID: 35692490 PMCID: PMC9174684 DOI: 10.3389/fnbot.2022.882518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 04/19/2022] [Indexed: 11/13/2022] Open
Abstract
In their book "How the Body Shapes the Way We Think: A New View of Intelligence," Pfeifer and Bongard put forth an embodied approach to cognition. Because of this position, many of their robot examples demonstrated "intelligent" behavior despite limited neural processing. It is our belief that neurorobots should attempt to follow many of these principles. In this article, we discuss a number of principles to consider when designing neurorobots and experiments using robots to test brain theories. These principles are strongly inspired by Pfeifer and Bongard, but build on their design principles by grounding them in neuroscience and by adding principles based on neuroscience research. Our design principles fall into three categories. First, organisms must react quickly and appropriately to events. Second, organisms must have the ability to learn and remember over their lifetimes. Third, organisms must weigh options that are crucial for survival. We believe that by following these design principles a robot's behavior will be more naturalistic and more successful.
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Affiliation(s)
- Jeffrey L. Krichmar
- Department of Cognitive Sciences, University of California, Irvine, Irvine, CA, United States
- Department of Computer Science, University of California, Irvine, Irvine, CA, United States
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69
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Lei D, Suo X, Qin K, Pinaya WHL, Ai Y, Li W, Kuang W, Lui S, Kemp GJ, Sweeney JA, Gong Q. Magnetization transfer imaging alterations and its diagnostic value in antipsychotic-naïve first-episode schizophrenia. Transl Psychiatry 2022; 12:189. [PMID: 35523792 PMCID: PMC9076920 DOI: 10.1038/s41398-022-01939-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 04/15/2022] [Accepted: 04/20/2022] [Indexed: 02/08/2023] Open
Abstract
Magnetization transfer imaging (MTI) may provide more sensitivity and mechanistic understanding of neuropathological changes associated with schizophrenia than volumetric MRI. This study aims to identify brain magnetization transfer ratio (MTR) changes in antipsychotic-naïve first-episode schizophrenia (FES), and to correlate MTR findings with clinical symptom severity. A total of 143 individuals with antipsychotic-naïve FES and 147 healthy controls (HCs) were included and underwent 3.0 T brain MTI between August 2005 and July 2014. Voxelwise analysis was performed to test for MTR differences with family-wise error corrections. Relationships of these differences to symptom severity were assessed using partial correlations. Exploratory analyses using a support vector machine (SVM) classifier were conducted to discriminate FES from HCs using MTR maps. Model performance was examined using a 10-fold stratified cross-validation. Compared with HCs, individuals with FES exhibited higher MTR values in left thalamus, precuneus, cuneus, and paracentral lobule, that were positively correlated with schizophrenia symptom severity [precuneus (r = 0.34, P = 0.0004), cuneus (r = 0.33, P = 0.0006) and paracentral lobule (r = 0.37, P = 0.001)]. Whole-brain MTR maps identified individuals with FES with overall accuracy 75.5% (219 of 290 individuals) based on SVM approach. In antipsychotic-naïve FES, clinically relevant biophysical abnormalities detected by MTI mainly in the left parieto-occipital regions are informative about local brain pathology, and have potential as diagnostic markers.
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Affiliation(s)
- Du Lei
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati, Cincinnati, OH, 45227, USA
| | - Xueling Suo
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
| | - Kun Qin
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
| | - Walter H L Pinaya
- Department of Biomedical Engineering, School of Biomedical Engineering & Imaging Sciences, King's College London, London, WC2R 2LS, UK
| | - Yuan Ai
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
| | - Wenbin Li
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
| | - Weihong Kuang
- Department of Psychiatry, West China Hospital of Sichuan University, Chengdu, Sichuan, 610041, China
- Research Unit of Psychoradiology, Chinese Academy of Medical Sciences, Chengdu, Sichuan, 610041, China
| | - Su Lui
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
- Functional and Molecular Imaging Key Laboratory of Sichuan Province, West China Hospital of Sichuan University, Chengdu, Sichuan, 610041, China
| | - Graham J Kemp
- Liverpool Magnetic Resonance Imaging Centre (LiMRIC) and Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool, L69 3GE, UK
| | - John A Sweeney
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
- Department of Psychiatry and Behavioral Neuroscience, University of Cincinnati, Cincinnati, OH, 45227, USA
| | - Qiyong Gong
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China.
- Department of Radiology, West China Xiamen Hospital of Sichuan University, Xiamen, Fujian, 361022, China.
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70
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Colzato LS, Beste C, Hommel B. Focusing on cognitive potential as the bright side of mental atypicality. Commun Biol 2022; 5:188. [PMID: 35233060 PMCID: PMC8888587 DOI: 10.1038/s42003-022-03126-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Accepted: 02/04/2022] [Indexed: 12/18/2022] Open
Abstract
Standard accounts of mental health are based on a "deficit view" solely focusing on cognitive impairments associated with psychiatric conditions. Based on the principle of neural competition, we suggest an alternative. Rather than focusing on deficits, we should focus on the cognitive potential that selective dysfunctions might bring with them. Our approach is based on two steps: the identification of the potential (i.e., of neural systems that might have benefited from reduced competition) and the development of corresponding training methods, using the testing-the-limits approach. Counterintuitively, we suggest to train not only the impaired function but on the function that might have benefitted or that may benefit from the lesser neural competition of the dysfunctional system.
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Affiliation(s)
- Lorenza S Colzato
- Cognitive Neurophysiology, Department of Child and Adolescent Psychiatry, Faculty of Medicine, TU Dresden, Dresden, Germany.,Cognitive Psychology, Faculty of Psychology, Shandong Normal University, Jinan, China.,University Neuropsychology Center, Faculty of Medicine, TU Dresden, Dresden, Germany
| | - Christian Beste
- Cognitive Neurophysiology, Department of Child and Adolescent Psychiatry, Faculty of Medicine, TU Dresden, Dresden, Germany. .,Cognitive Psychology, Faculty of Psychology, Shandong Normal University, Jinan, China. .,University Neuropsychology Center, Faculty of Medicine, TU Dresden, Dresden, Germany.
| | - Bernhard Hommel
- Cognitive Neurophysiology, Department of Child and Adolescent Psychiatry, Faculty of Medicine, TU Dresden, Dresden, Germany.,Cognitive Psychology, Faculty of Psychology, Shandong Normal University, Jinan, China.,University Neuropsychology Center, Faculty of Medicine, TU Dresden, Dresden, Germany
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71
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Suen JY, Navlakha S. A feedback control principle common to several biological and engineered systems. J R Soc Interface 2022; 19:20210711. [PMID: 35232277 PMCID: PMC8889180 DOI: 10.1098/rsif.2021.0711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Accepted: 02/02/2022] [Indexed: 11/12/2022] Open
Abstract
Feedback control is used by many distributed systems to optimize behaviour. Traditional feedback control algorithms spend significant resources to constantly sense and stabilize a continuous control variable of interest, such as vehicle speed for implementing cruise control, or body temperature for maintaining homeostasis. By contrast, discrete-event feedback (e.g. a server acknowledging when data are successfully transmitted, or a brief antennal interaction when an ant returns to the nest after successful foraging) can reduce costs associated with monitoring a continuous variable; however, optimizing behaviour in this setting requires alternative strategies. Here, we studied parallels between discrete-event feedback control strategies in biological and engineered systems. We found that two common engineering rules-additive-increase, upon positive feedback, and multiplicative-decrease, upon negative feedback, and multiplicative-increase multiplicative-decrease-are used by diverse biological systems, including for regulating foraging by harvester ant colonies, for maintaining cell-size homeostasis, and for synaptic learning and adaptation in neural circuits. These rules support several goals of these systems, including optimizing efficiency (i.e. using all available resources); splitting resources fairly among cooperating agents, or conversely, acquiring resources quickly among competing agents; and minimizing the latency of responses, especially when conditions change. We hypothesize that theoretical frameworks from distributed computing may offer new ways to analyse adaptation behaviour of biology systems, and in return, biological strategies may inspire new algorithms for discrete-event feedback control in engineering.
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Affiliation(s)
- Jonathan Y. Suen
- Cold Spring Harbor Laboratory, Simons Center for Quantitative Biology, Cold Spring Harbor, NY, USA
| | - Saket Navlakha
- Cold Spring Harbor Laboratory, Simons Center for Quantitative Biology, Cold Spring Harbor, NY, USA
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72
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Trepl J, Dahlmanns M, Kornhuber J, Groemer TW, Dahlmanns JK. Common network effect-patterns after monoamine reuptake inhibition in dissociated hippocampus cultures. J Neural Transm (Vienna) 2022; 129:261-275. [PMID: 35211818 PMCID: PMC8930948 DOI: 10.1007/s00702-022-02477-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 02/11/2022] [Indexed: 12/04/2022]
Abstract
The pharmacological treatment of major depressive disorder with currently available antidepressant drugs is still unsatisfying as response to medication is delayed and in some patients even non-existent. To understand complex psychiatric diseases such as major depressive disorder and their treatment, research focus is shifting from investigating single neurons towards a view of the entire functional and effective neuronal network, because alterations on single synapses through antidepressant drugs may translate to alterations in the entire network. Here, we examined the effects of monoamine reuptake inhibitors on in vitro hippocampal network dynamics using calcium fluorescence imaging and analyzing the data with means of graph theoretical parameters. Hypothesizing that monoamine reuptake inhibitors operate through changes of effective connectivity on micro-scale neuronal networks, we measured the effects of the selective monoamine reuptake inhibitors GBR-12783, Sertraline, Venlafaxine, and Amitriptyline on neuronal networks. We identified a common pattern of effects of the different tested monoamine reuptake inhibitors. After treatment with GBR-12783, Sertraline, and Venlafaxine, the connectivity degree, measuring the number of existing connections in the network, was significantly decreased. All tested substances led to networks with more submodules and a reduced global efficiency. No monoamine reuptake inhibitor did affect network-wide firing rate, the characteristic path length, or the network strength. In our study, we found that monoamine reuptake inhibition in neuronal networks in vitro results in a sharpening of the network structure. These alterations could be the basis for the reorganization of a large-scale miswired network in major depressive disorder.
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Affiliation(s)
- Julia Trepl
- Department of Psychiatry and Psychotherapy, Friedrich-Alexander University of Erlangen-Nürnberg, Schwabachanlage 6, 91054, Erlangen, Germany
| | - Marc Dahlmanns
- Institute for Physiology and Pathophysiology, Friedrich-Alexander University Erlangen-Nürnberg, 91054, Erlangen, Germany
| | - Johannes Kornhuber
- Department of Psychiatry and Psychotherapy, Friedrich-Alexander University of Erlangen-Nürnberg, Schwabachanlage 6, 91054, Erlangen, Germany
| | - Teja Wolfgang Groemer
- Department of Psychiatry and Psychotherapy, Friedrich-Alexander University of Erlangen-Nürnberg, Schwabachanlage 6, 91054, Erlangen, Germany
| | - Jana Katharina Dahlmanns
- Department of Psychiatry and Psychotherapy, Friedrich-Alexander University of Erlangen-Nürnberg, Schwabachanlage 6, 91054, Erlangen, Germany.
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73
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Alvarez GM, Rudolph MD, Cohen JR, Muscatell KA. Lower Socioeconomic Position Is Associated with Greater Activity in and Integration within an Allostatic-Interoceptive Brain Network in Response to Affective Stimuli. J Cogn Neurosci 2022; 34:1906-1927. [PMID: 35139207 DOI: 10.1162/jocn_a_01830] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Socioeconomic inequities shape physical health and emotional well-being. As such, recent work has examined the neural mechanisms through which socioeconomic position (SEP) may influence health. However, there remain critical gaps in knowledge regarding the relationships between SEP and brain function. These gaps include a lack of research on: (1) the association between SEP and brain functioning in later life, (2) relationships between SEP and functioning of the whole brain beyond specific regions of interest, and (3) how neural responses to positive affective stimuli differ by SEP. The current study addressed these gaps by examining the association between SEP (i.e., education, income) and neural responses to affective stimuli among 122 mid- to late-life adults. During MRI scanning, participants viewed 30 positive, 30 negative, and 30 neutral images; activation and network connectivity analyses explored associations between SEP and neural responses to these affective stimuli. Analyses revealed that those with lower SEP showed greater neural activity to both positive and negative images in regions within the allostatic-interoceptive network, a system of regions implicated in representing and regulating physiological states of the body and the external environment. There were no positive associations between SEP and neural responses to negative or positive images. In addition, graph-theory network analyses showed that individuals with lower SEP demonstrated greater global efficiency within the allostatic-interoceptive network and executive control network, across all task conditions. The findings suggest that lower SEP is associated with enhanced neural sensitivity to affective cues that may be metabolically costly to maintain over time and suggest a mechanism by which SEP might get "under the skull" to influence mental and physical well-being.
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Affiliation(s)
| | | | - Jessica R Cohen
- University of North Carolina at Chapel Hill.,Carolina Institute for Developmental Disabilities, Carrboro, NC
| | - Keely A Muscatell
- University of North Carolina at Chapel Hill.,Carolina Institute for Developmental Disabilities, Carrboro, NC
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74
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Cakan C, Dimulescu C, Khakimova L, Obst D, Flöel A, Obermayer K. Spatiotemporal Patterns of Adaptation-Induced Slow Oscillations in a Whole-Brain Model of Slow-Wave Sleep. Front Comput Neurosci 2022; 15:800101. [PMID: 35095451 PMCID: PMC8790481 DOI: 10.3389/fncom.2021.800101] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 12/16/2021] [Indexed: 11/13/2022] Open
Abstract
During slow-wave sleep, the brain is in a self-organized regime in which slow oscillations (SOs) between up- and down-states travel across the cortex. While an isolated piece of cortex can produce SOs, the brain-wide propagation of these oscillations are thought to be mediated by the long-range axonal connections. We address the mechanism of how SOs emerge and recruit large parts of the brain using a whole-brain model constructed from empirical connectivity data in which SOs are induced independently in each brain area by a local adaptation mechanism. Using an evolutionary optimization approach, good fits to human resting-state fMRI data and sleep EEG data are found at values of the adaptation strength close to a bifurcation where the model produces a balance between local and global SOs with realistic spatiotemporal statistics. Local oscillations are more frequent, last shorter, and have a lower amplitude. Global oscillations spread as waves of silence across the undirected brain graph, traveling from anterior to posterior regions. These traveling waves are caused by heterogeneities in the brain network in which the connection strengths between brain areas determine which areas transition to a down-state first, and thus initiate traveling waves across the cortex. Our results demonstrate the utility of whole-brain models for explaining the origin of large-scale cortical oscillations and how they are shaped by the connectome.
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Affiliation(s)
- Caglar Cakan
- Department of Software Engineering and Theoretical Computer Science, Technische Universität Berlin, Berlin, Germany
- Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
| | - Cristiana Dimulescu
- Department of Software Engineering and Theoretical Computer Science, Technische Universität Berlin, Berlin, Germany
- Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
| | - Liliia Khakimova
- Department of Neurology, University Medicine, Greifswald, Germany
| | - Daniela Obst
- Department of Neurology, University Medicine, Greifswald, Germany
| | - Agnes Flöel
- Department of Neurology, University Medicine, Greifswald, Germany
- German Center for Neurodegenerative Diseases, Greifswald, Germany
| | - Klaus Obermayer
- Department of Software Engineering and Theoretical Computer Science, Technische Universität Berlin, Berlin, Germany
- Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
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75
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Lei H, Hu R, Luo G, Yang T, Shen H, Deng H, Chen C, Zhao H, Liu J. Altered Structural and Functional MRI Connectivity in Type 2 Diabetes Mellitus Related Cognitive Impairment: A Review. Front Hum Neurosci 2022; 15:755017. [PMID: 35069149 PMCID: PMC8770326 DOI: 10.3389/fnhum.2021.755017] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Accepted: 12/13/2021] [Indexed: 12/16/2022] Open
Abstract
Type 2 diabetes mellitus (T2DM) is associated with cognitive impairment in many domains. There are several pieces of evidence that changes in neuronal neuropathies and metabolism have been observed in T2DM. Structural and functional MRI shows that abnormal connections and synchronization occur in T2DM brain circuits and related networks. Neuroplasticity and energy metabolism appear to be principal effector systems, which may be related to amyloid beta (Aβ) deposition, although there is no unified explanation that includes the complex etiology of T2DM with cognitive impairment. Herein, we assume that cognitive impairment in diabetes may lead to abnormalities in neuroplasticity and energy metabolism in the brain, and those reflected to MRI structural connectivity and functional connectivity, respectively.
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76
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Chai CM, Chen W, Wong WR, Park H, Cohen SM, Wan X, Sternberg PW. A conserved behavioral role for a nematode interneuron neuropeptide receptor. Genetics 2022; 220:iyab198. [PMID: 34741504 PMCID: PMC8733633 DOI: 10.1093/genetics/iyab198] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Accepted: 10/28/2021] [Indexed: 01/14/2023] Open
Abstract
Neuropeptides are evolutionarily conserved modulators of many aspects of animal behavior and physiology, and expand the repertoire of processes that can be controlled by a limited number of neurons. Deciphering the neuropeptidergic codes that govern distinct processes requires systematic functional analyses of neuropeptides and their cognate receptors. Even in well-studied model organisms like Caenorhabditis elegans, however, such efforts have been precluded by a lack of mutant reagents. Here, we generated and screened 21 C. elegans neuropeptide G-protein coupled receptor mutants with no pre-existing reagents for the touch-evoked escape response, and implicated six receptors expressed in diverse neuron classes representing multiple circuit levels in this behavior. We further characterized the mutant with the most severe phenotype, frpr-14, which was defective in multiple behavioral paradigms. We leveraged this range of phenotypes to reveal that FRPR-14 modulation of different precommand interneuron classes, AVH and AIB, can drive distinct behavioral subsets, demonstrating cellular context-dependent roles for FRPR-14 signaling. We then show that Caenorhabditis briggsae CBR-FRPR-14 modulates an AVH-like interneuron pair to regulate the same behaviors as C. elegans but to a smaller extent. Our results also suggest that differences in touch-evoked escape circuit architecture between closely related species results from changes in neuropeptide receptor expression pattern, as opposed to ligand-receptor pairing. This study provides insights into the principles utilized by a compact, multiplexed nervous system to generate intraspecific behavioral complexity and interspecific variation.
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Affiliation(s)
- Cynthia M Chai
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Wen Chen
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Wan-Rong Wong
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Heenam Park
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Sarah M Cohen
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Xuan Wan
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Paul W Sternberg
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA
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77
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Li X, Sawamura D, Hamaguchi H, Urushibata Y, Feiweier T, Ogawa K, Tha KK. Microscopic Fractional Anisotropy Detects Cognitive Training-Induced Microstructural Brain Changes. Tomography 2022; 8:33-44. [PMID: 35076639 PMCID: PMC8788549 DOI: 10.3390/tomography8010004] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Revised: 12/17/2021] [Accepted: 12/23/2021] [Indexed: 11/17/2022] Open
Abstract
Cognitive training-induced neuroplastic brain changes have been reported. This prospective study evaluated whether microscopic fractional anisotropy (μFA) derived from double diffusion encoding (DDE) MRI could detect brain changes following a 4 week cognitive training. Twenty-nine healthy volunteers were recruited and randomly assigned into the training (n = 21) and control (n = 8) groups. Both groups underwent brain MRI including DDE MRI and 3D-T1-weighted imaging twice at an interval of 4–6 weeks, during which the former underwent the training. The training consisted of hour-long dual N-back and attention network tasks conducted five days per week. Training and time-related changes of DDE MRI indices (μFA, fractional anisotropy (FA), and mean diffusivity (MD)) and the gray and white matter volume were evaluated using mixed-design analysis of variance. In addition, any significant imaging indices were tested for correlation with cognitive training-induced task performance changes, using partial correlation analyses. μFA in the left middle frontal gyrus decreased upon the training (53 voxels, uncorrected p < 0.001), which correlated moderately with response time changes in the orienting component of attention (r = −0.521, uncorrected p = 0.032). No significant training and time-related changes were observed for other imaging indices. Thus, μFA can become a sensitive index to detect cognitive training-induced neuroplastic changes.
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Affiliation(s)
- Xinnan Li
- Laboratory for Biomarker Imaging Science, Hokkaido University Graduate School of Biomedical Science and Engineering, Sapporo 060-8638, Japan; (X.L.); (H.H.)
| | - Daisuke Sawamura
- Department of Rehabilitation Science, Hokkaido University Faculty of Health Sciences, Sapporo 060-0812, Japan;
| | - Hiroyuki Hamaguchi
- Laboratory for Biomarker Imaging Science, Hokkaido University Graduate School of Biomedical Science and Engineering, Sapporo 060-8638, Japan; (X.L.); (H.H.)
| | | | | | - Keita Ogawa
- Department of Rehabilitation, Hokkaido University Hospital, Sapporo 060-8648, Japan;
| | - Khin Khin Tha
- Laboratory for Biomarker Imaging Science, Hokkaido University Graduate School of Biomedical Science and Engineering, Sapporo 060-8638, Japan; (X.L.); (H.H.)
- Global Center for Biomedical Science and Engineering, Hokkaido University Faculty of Medicine, Sapporo 060-8638, Japan
- Correspondence: ; Tel.: +81-11-706-8183
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78
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Zhang J, Jiang Y, Song Y, Zhang P, He S. Spatial tuning of face part representations within face-selective areas revealed by high-field fMRI. eLife 2021; 10:e70925. [PMID: 34964711 PMCID: PMC8716104 DOI: 10.7554/elife.70925] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 12/11/2021] [Indexed: 11/20/2022] Open
Abstract
Regions sensitive to specific object categories as well as organized spatial patterns sensitive to different features have been found across the whole ventral temporal cortex (VTC). However, it is unclear that within each object category region, how specific feature representations are organized to support object identification. Would object features, such as object parts, be represented in fine-scale spatial tuning within object category-specific regions? Here, we used high-field 7T fMRI to examine the spatial tuning to different face parts within each face-selective region. Our results show consistent spatial tuning of face parts across individuals that within right posterior fusiform face area (pFFA) and right occipital face area (OFA), the posterior portion of each region was biased to eyes, while the anterior portion was biased to mouth and chin stimuli. Our results demonstrate that within the occipital and fusiform face processing regions, there exist systematic spatial tuning to different face parts that support further computation combining them.
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Affiliation(s)
- Jiedong Zhang
- Institute of Biophysics, Chinese Academy of SciencesBeijingChina
- University of Chinese Academy of SciencesBeijingChina
| | - Yong Jiang
- Institute of Biophysics, Chinese Academy of SciencesBeijingChina
- University of Chinese Academy of SciencesBeijingChina
| | - Yunjie Song
- Institute of Biophysics, Chinese Academy of SciencesBeijingChina
- University of Chinese Academy of SciencesBeijingChina
| | - Peng Zhang
- Institute of Biophysics, Chinese Academy of SciencesBeijingChina
- University of Chinese Academy of SciencesBeijingChina
| | - Sheng He
- Institute of Biophysics, Chinese Academy of SciencesBeijingChina
- University of Chinese Academy of SciencesBeijingChina
- Department of Psychology, University of MinnesotaMinneapolisUnited States
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79
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Yu H, Qu H, Chen A, Du Y, Liu Z, Wang W. Alteration of Effective Connectivity in the Default Mode Network of Autism After an Intervention. Front Neurosci 2021; 15:796437. [PMID: 35002608 PMCID: PMC8727456 DOI: 10.3389/fnins.2021.796437] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2021] [Accepted: 12/08/2021] [Indexed: 11/25/2022] Open
Abstract
Neuroimaging has revealed numerous atypical functional connectivity of default mode network (DMN) dedicated to social communications (SC) in autism spectrum disorder (ASD), yet their nature and directionality remain unclear. Here, preschoolers with autism received physical intervention from a 12-week mini-basketball training program (12W-MBTP). Therefore, the directionality and nature of regional interactions within the DMN after the intervention are evaluated while assessing the impact of an intervention on SC. Based on the results of independent component analysis (ICA), we applied spectral dynamic causal modeling (DCM) for participants aged 3-6 years (experimental group, N = 17, control group, N = 14) to characterize the longitudinal changes following intervention in intrinsic and extrinsic effective connectivity (EC) between core regions of the DMN. Then, we analyzed the correlation between the changes in EC and SRS-2 scores to establish symptom-based validation. We found that after the 12W-MBTP intervention, the SRS-2 score of preschoolers with ASD in the experimental group was decreased. Concurrently, the inhibitory directional connections were observed between the core regions of the DMN, including increased self-inhibition in the medial prefrontal cortex (mPFC), and the changes of EC in mPFC were significantly correlated with change in the social responsiveness scale-2 (SRS-2) score. These new findings shed light on DMN as a potential intervention target, as the inhibitory information transmission between its core regions may play a positive role in improving SC behavior in preschoolers with ASD, which may be a reliable neuroimaging biomarker for future studies. Clinical Trial Registration: This study registered with the Chinese Clinical Trial Registry (ChiCTR1900024973) on August 05, 2019.
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Affiliation(s)
- Han Yu
- Department of Radiology, Medical Imaging Center, The Affiliated Hospital of Yangzhou University, Yangzhou University, Yangzhou, China
| | - Hang Qu
- Department of Radiology, Medical Imaging Center, The Affiliated Hospital of Yangzhou University, Yangzhou University, Yangzhou, China
| | - Aiguo Chen
- College of Physical Education, Yangzhou University, Yangzhou, China
| | - Yifan Du
- Department of Radiology, Medical Imaging Center, The Affiliated Hospital of Yangzhou University, Yangzhou University, Yangzhou, China
| | - Zhimei Liu
- College of Physical Education, Yangzhou University, Yangzhou, China
| | - Wei Wang
- Department of Radiology, Medical Imaging Center, The Affiliated Hospital of Yangzhou University, Yangzhou University, Yangzhou, China
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80
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Cheng B, Zhou Y, Kwok VPY, Li Y, Wang S, Zhao Y, Meng Y, Deng W, Wang J. Altered Functional Connectivity Density and Couplings in Postpartum Depression with and Without Anxiety. Soc Cogn Affect Neurosci 2021; 17:756-766. [PMID: 34904174 PMCID: PMC9340108 DOI: 10.1093/scan/nsab127] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 10/28/2021] [Accepted: 12/13/2021] [Indexed: 02/05/2023] Open
Abstract
Postpartum depression (PPD) is the most common psychological health issue among women, which often comorbids with anxiety (PPD-A). PPD and PPD-A showed highly overlapping clinical symptoms. Identifying disorder-specific neurophysiological markers of PDD and PPD-A is important for better clinical diagnosis and treatments. Here, we performed functional connectivity density (FCD) and resting-state functional connectivity (rsFC) analyses in 138 participants (45 unmedicated patients with first-episode PPD, 31 PDD-A patients and 62 healthy postnatal women, respectively). FCD mapping revealed specifically weaker long-range FCD in right lingual gyrus (LG.R) for PPD patients and significantly stronger long-range FCD in left ventral striatum (VS.L) for PPD-A patients. The follow-up rsFC analyses further revealed reduced functional connectivity between dorsomedial prefrontal cortex (dmPFC) and VS.L in both PPD and PPD-A. PPD showed specific changes of rsFC between LG.R and dmPFC, right angular gyrus and left precentral gyrus, while PPD-A represented specifically abnormal rsFC between VS.L and left ventrolateral prefrontal cortex. Moreover, the altered FCD and rsFC were closely associated with depression and anxiety symptoms load. Taken together, our study is the first to identify common and disorder-specific neural circuit disruptions in PPD and PPD-A, which may facilitate more effective diagnosis and treatments.
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Affiliation(s)
- Bochao Cheng
- Department of Radiology, West China Second University Hospital of Sichuan University, Chengdu 610041, China.,Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu 610041, China
| | - Yushan Zhou
- Department of Nuclear Medicine, West China Hospital of Sichuan University, Chengdu, China.,Key Laboratory of Birth Defects and Related Diseases of Women and Children (Sichuan University), Ministry of Education, Chengdu 610041, China
| | - Veronica P Y Kwok
- Center for Language and Brain, Shenzhen Institute of Neuroscience, Shenzhen 518057, China
| | - Yuanyuan Li
- Key Laboratory for NeuroInformation of the Ministry of Education, School of life Science and technology, University of Electronic Science and Technology of China, Chengdu 625014, China
| | - Song Wang
- Huaxi MR Research Center (HMRRC), Department of Radiology, West China Hospital of Sichuan University, Chengdu 610041, China
| | - Yajun Zhao
- School of Sociality and Psychology, Southwest Minzu University, Chengdu, China
| | - Yajing Meng
- Department of Psychiatry, West China Hospital of Sichuan University, Chengdu 610041, China
| | - Wei Deng
- Department of Psychiatry, West China Hospital of Sichuan University, Chengdu 610041, China
| | - Jiaojian Wang
- State Key Laboratory of Primate Biomedical Research, Institute of Primate Translational Medicine, Kunming University of Science and Technology, Kunming 650500, China
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81
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Fitch WT. Information and the single cell. Curr Opin Neurobiol 2021; 71:150-157. [PMID: 34844102 DOI: 10.1016/j.conb.2021.10.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 09/17/2021] [Accepted: 10/20/2021] [Indexed: 11/16/2022]
Abstract
Understanding the evolution of cognition requires an understanding of the costs and benefits of neural computation. This requires analysis of neuronal circuitry in terms of information-processing efficiency, ultimately cashed out in terms of ATP expenditures relative to adaptive problem-solving abilities. Despite a preoccupation in neuroscience with the synapse as the source of stored neural information, it is clear that, along with synaptic weights and electrochemical dynamics, neurons have multiple mechanisms which store and process information, including 'wetware' (protein phosphorylation, gene transcription, and so on) and cell morphology (dendritic form). Insights into non-synaptic information-processing can be gained by examining the surprisingly complex abilities of single-celled organisms ('cellular cognition') because neurons share many of the same abilities. Cells provide the fundamental level at which information processing interfaces with gene expression, and cell-internal information-processing mechanisms are both powerful and energetically efficient. Understanding cellular computation should be a central goal of research on cognitive evolution.
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82
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Khan ZM, Wilts E, Vlaisavljevich E, Long TE, Verbridge SS. Electroresponsive Hydrogels for Therapeutic Applications in the Brain. Macromol Biosci 2021; 22:e2100355. [PMID: 34800348 DOI: 10.1002/mabi.202100355] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 10/29/2021] [Indexed: 12/22/2022]
Abstract
Electroresponsive hydrogels possess a conducting material component and respond to electric stimulation through reversible absorption and expulsion of water. The high level of hydration, soft elastomeric compliance, biocompatibility, and enhanced electrochemical properties render these hydrogels suitable for implantation in the brain to enhance the transmission of neural electric signals and ion transport. This review provides an overview of critical electroresponsive hydrogel properties for augmenting electric stimulation in the brain. A background on electric stimulation in the brain through electroresponsive hydrogels is provided. Common conducting materials and general techniques to integrate them into hydrogels are briefly discussed. This review focuses on and summarizes advances in electric stimulation of electroconductive hydrogels for therapeutic applications in the brain, such as for controlling delivery of drugs, directing neural stem cell differentiation and neurogenesis, improving neural biosensor capabilities, and enhancing neural electrode-tissue interfaces. The key challenges in each of these applications are discussed and recommendations for future research are also provided.
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Affiliation(s)
- Zerin M Khan
- Virginia Tech - Wake Forest University School of Biomedical Engineering and Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Emily Wilts
- Department of Cellular and Physiological Sciences, University of British Columbia, Vancouver, British Columbia, V6T 1Z3, Canada
| | - Eli Vlaisavljevich
- Virginia Tech - Wake Forest University School of Biomedical Engineering and Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Timothy E Long
- Biodesign Center for Sustainable Macromolecular Materials and Manufacturing, Arizona State University, Tempe, AZ, 85287, USA
| | - Scott S Verbridge
- Virginia Tech - Wake Forest University School of Biomedical Engineering and Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
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83
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Shen Y, Wang J, Navlakha S. A Correspondence Between Normalization Strategies in Artificial and Biological Neural Networks. Neural Comput 2021; 33:3179-3203. [PMID: 34474484 PMCID: PMC8662716 DOI: 10.1162/neco_a_01439] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 06/14/2021] [Indexed: 12/24/2022]
Abstract
A fundamental challenge at the interface of machine learning and neuroscience is to uncover computational principles that are shared between artificial and biological neural networks. In deep learning, normalization methods such as batch normalization, weight normalization, and their many variants help to stabilize hidden unit activity and accelerate network training, and these methods have been called one of the most important recent innovations for optimizing deep networks. In the brain, homeostatic plasticity represents a set of mechanisms that also stabilize and normalize network activity to lie within certain ranges, and these mechanisms are critical for maintaining normal brain function. In this article, we discuss parallels between artificial and biological normalization methods at four spatial scales: normalization of a single neuron's activity, normalization of synaptic weights of a neuron, normalization of a layer of neurons, and normalization of a network of neurons. We argue that both types of methods are functionally equivalent-that is, both push activation patterns of hidden units toward a homeostatic state, where all neurons are equally used-and we argue that such representations can improve coding capacity, discrimination, and regularization. As a proof of concept, we develop an algorithm, inspired by a neural normalization technique called synaptic scaling, and show that this algorithm performs competitively against existing normalization methods on several data sets. Overall, we hope this bidirectional connection will inspire neuroscientists and machine learners in three ways: to uncover new normalization algorithms based on established neurobiological principles; to help quantify the trade-offs of different homeostatic plasticity mechanisms used in the brain; and to offer insights about how stability may not hinder, but may actually promote, plasticity.
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Affiliation(s)
- Yang Shen
- Cold Spring Harbor Laboratory, Simons Center for Quantitative Biology, Cold Spring Harbor, NY 11724, U.S.A.
| | - Julia Wang
- Cold Spring Harbor Laboratory, Simons Center for Quantitative Biology, Cold Spring Harbor, NY 11724, U.S.A.
| | - Saket Navlakha
- Cold Spring Harbor Laboratory, Simons Center for Quantitative Biology, Cold Spring Harbor, NY 11724, U.S.A.
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84
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Macpherson T, Matsumoto M, Gomi H, Morimoto J, Uchibe E, Hikida T. Parallel and hierarchical neural mechanisms for adaptive and predictive behavioral control. Neural Netw 2021; 144:507-521. [PMID: 34601363 DOI: 10.1016/j.neunet.2021.09.009] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 07/21/2021] [Accepted: 09/06/2021] [Indexed: 12/21/2022]
Abstract
Our brain can be recognized as a network of largely hierarchically organized neural circuits that operate to control specific functions, but when acting in parallel, enable the performance of complex and simultaneous behaviors. Indeed, many of our daily actions require concurrent information processing in sensorimotor, associative, and limbic circuits that are dynamically and hierarchically modulated by sensory information and previous learning. This organization of information processing in biological organisms has served as a major inspiration for artificial intelligence and has helped to create in silico systems capable of matching or even outperforming humans in several specific tasks, including visual recognition and strategy-based games. However, the development of human-like robots that are able to move as quickly as humans and respond flexibly in various situations remains a major challenge and indicates an area where further use of parallel and hierarchical architectures may hold promise. In this article we review several important neural and behavioral mechanisms organizing hierarchical and predictive processing for the acquisition and realization of flexible behavioral control. Then, inspired by the organizational features of brain circuits, we introduce a multi-timescale parallel and hierarchical learning framework for the realization of versatile and agile movement in humanoid robots.
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Affiliation(s)
- Tom Macpherson
- Laboratory for Advanced Brain Functions, Institute for Protein Research, Osaka University, Osaka, Japan
| | - Masayuki Matsumoto
- Division of Biomedical Science, Faculty of Medicine, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - Hiroaki Gomi
- NTT Communication Science Laboratories, Nippon Telegraph and Telephone Co., Kanagawa, Japan
| | - Jun Morimoto
- Department of Brain Robot Interface, ATR Computational Neuroscience Laboratories, Kyoto, Japan; Graduate School of Informatics, Kyoto University, Kyoto, Japan
| | - Eiji Uchibe
- Department of Brain Robot Interface, ATR Computational Neuroscience Laboratories, Kyoto, Japan
| | - Takatoshi Hikida
- Laboratory for Advanced Brain Functions, Institute for Protein Research, Osaka University, Osaka, Japan.
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85
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Amico E, Abbas K, Duong-Tran DA, Tipnis U, Rajapandian M, Chumin E, Ventresca M, Harezlak J, Goñi J. Toward an information theoretical description of communication in brain networks. Netw Neurosci 2021; 5:646-665. [PMID: 34746621 PMCID: PMC8567835 DOI: 10.1162/netn_a_00185] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 01/18/2021] [Indexed: 11/21/2022] Open
Abstract
Modeling communication dynamics in the brain is a key challenge in network neuroscience. We present here a framework that combines two measurements for any system where different communication processes are taking place on top of a fixed structural topology: path processing score (PPS) estimates how much the brain signal has changed or has been transformed between any two brain regions (source and target); path broadcasting strength (PBS) estimates the propagation of the signal through edges adjacent to the path being assessed. We use PPS and PBS to explore communication dynamics in large-scale brain networks. We show that brain communication dynamics can be divided into three main "communication regimes" of information transfer: absent communication (no communication happening); relay communication (information is being transferred almost intact); and transducted communication (the information is being transformed). We use PBS to categorize brain regions based on the way they broadcast information. Subcortical regions are mainly direct broadcasters to multiple receivers; Temporal and frontal nodes mainly operate as broadcast relay brain stations; visual and somatomotor cortices act as multichannel transducted broadcasters. This work paves the way toward the field of brain network information theory by providing a principled methodology to explore communication dynamics in large-scale brain networks.
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Affiliation(s)
- Enrico Amico
- Institute of Bioengineering, Center for Neuroprosthetics, EPFL, Geneva, Switzerland
- Department of Radiology and Medical Informatics, University of Geneva (UNIGE), Geneva, Switzerland
| | - Kausar Abbas
- Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, IN, USA
- School of Industrial Engineering, Purdue University, West Lafayette, IN, USA
| | - Duy Anh Duong-Tran
- School of Industrial Engineering, Purdue University, West Lafayette, IN, USA
| | - Uttara Tipnis
- Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, IN, USA
- School of Industrial Engineering, Purdue University, West Lafayette, IN, USA
| | | | - Evgeny Chumin
- Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA
| | - Mario Ventresca
- School of Industrial Engineering, Purdue University, West Lafayette, IN, USA
| | - Jaroslaw Harezlak
- Department of Epidemiology and Biostatistics, Indiana University, Bloomington, IN, USA
| | - Joaquín Goñi
- Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, IN, USA
- School of Industrial Engineering, Purdue University, West Lafayette, IN, USA
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, USA
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86
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Sparse Coding in Temporal Association Cortex Improves Complex Sound Discriminability. J Neurosci 2021; 41:7048-7064. [PMID: 34244361 DOI: 10.1523/jneurosci.3167-20.2021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 06/05/2021] [Accepted: 06/18/2021] [Indexed: 11/21/2022] Open
Abstract
The mouse auditory cortex is comprised of several auditory fields spanning the dorsoventral axis of the temporal lobe. The ventral most auditory field is the temporal association cortex (TeA), which remains largely unstudied. Using Neuropixels probes, we simultaneously recorded from primary auditory cortex (AUDp), secondary auditory cortex (AUDv), and TeA, characterizing neuronal responses to pure tones and frequency modulated (FM) sweeps in awake head-restrained female mice. As compared with AUDp and AUDv, single-unit (SU) responses to pure tones in TeA were sparser, delayed, and prolonged. Responses to FMs were also sparser. Population analysis showed that the sparser responses in TeA render it less sensitive to pure tones, yet more sensitive to FMs. When characterizing responses to pure tones under anesthesia, the distinct signature of TeA was changed considerably as compared with that in awake mice, implying that responses in TeA are strongly modulated by non-feedforward connections. Together, these findings provide a basic electrophysiological description of TeA as an integral part of sound processing along the cortical hierarchy.SIGNIFICANCE STATEMENT This is the first comprehensive characterization of the auditory responses in the awake mouse auditory temporal association cortex (TeA). The study provides the foundations for further investigation of TeA and its involvement in auditory learning, plasticity, auditory driven behaviors etc. The study was conducted using state of the art data collection tools, allowing for simultaneous recording from multiple cortical regions and numerous neurons.
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87
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Pei X, Qi X, Jiang Y, Shen X, Wang AL, Cao Y, Zhou C, Yu Y. Sparsely Wiring Connectivity in the Upper Beta Band Characterizes the Brains of Top Swimming Athletes. Front Psychol 2021; 12:661632. [PMID: 34335372 PMCID: PMC8322235 DOI: 10.3389/fpsyg.2021.661632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 06/22/2021] [Indexed: 11/13/2022] Open
Abstract
Human brains are extremely energy costly in neural connections and activities. However, it is unknown what is the difference in the brain connectivity between top athletes with long-term professional trainings and age-matched controls. Here we ask whether long-term training can lower brain-wiring cost while have better performance. Since elite swimming requires athletes to move their arms and legs at different tempos in time with high coordination skills, we selected an eye-hand-foot complex reaction (CR) task to examine the relations between the task performance and the brain connections and activities, as well as to explore the energy cost-efficiency of top athletes. Twenty-one master-level professional swimmers and 23 age-matched non-professional swimmers as controls were recruited to perform the CR task with concurrent 8-channel EEG recordings. Reaction time and accuracy of the CR task were recorded. Topological network analysis of various frequency bands was performed using the phase lag index (PLI) technique to avoid volume conduction effects. The wiring number of connections and mean frequency were calculated to reflect the wiring and activity cost, respectively. Results showed that professional athletes demonstrated better eye-hand-foot coordination than controls when performing the CR task, indexing by faster reaction time and higher accuracy. Comparing to controls, athletes' brain demonstrated significantly less connections and weaker correlations in upper beta frequency band between the frontal and parietal regions, while demonstrated stronger connectivity in the low theta frequency band between sites of F3 and Cz/C4. Additionally, athletes showed highly stable and low eye-blinking rates across different reaction performance, while controls had high blinking frequency with high variance. Elite athletes' brain may be characterized with energy efficient sparsely wiring connections in support of superior motor performance and better cognitive performance in the eye-hand-foot complex reaction task.
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Affiliation(s)
- Xinzhen Pei
- Human Phenome Institute, State Key Laboratory of Medical Neurobiology and Ministry of Education (MOE) Frontiers Center for Brain Science, School of Life Science and Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, China
| | - Xiaoying Qi
- Human Phenome Institute, State Key Laboratory of Medical Neurobiology and Ministry of Education (MOE) Frontiers Center for Brain Science, School of Life Science and Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, China
| | - Yuzhou Jiang
- Human Phenome Institute, State Key Laboratory of Medical Neurobiology and Ministry of Education (MOE) Frontiers Center for Brain Science, School of Life Science and Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, China
| | - Xunzhang Shen
- Shanghai Research Institute of Sports Science, Shanghai, China
| | - An-Li Wang
- Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, United States
| | - Yang Cao
- Human Phenome Institute, State Key Laboratory of Medical Neurobiology and Ministry of Education (MOE) Frontiers Center for Brain Science, School of Life Science and Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, China
| | - Chenglin Zhou
- School of Psychology, Shanghai University of Sport, Shanghai, China
| | - Yuguo Yu
- Human Phenome Institute, State Key Laboratory of Medical Neurobiology and Ministry of Education (MOE) Frontiers Center for Brain Science, School of Life Science and Research Institute of Intelligent Complex Systems, Fudan University, Shanghai, China
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88
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A neuromimetic realization of hippocampal CA1 for theta wave generation. Neural Netw 2021; 142:548-563. [PMID: 34340189 DOI: 10.1016/j.neunet.2021.07.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 04/29/2021] [Accepted: 07/02/2021] [Indexed: 11/20/2022]
Abstract
Recent advances in neural engineering allowed the development of neuroprostheses which facilitate functionality in people with neurological problems. In this research, a real-time neuromorphic system is proposed to artificially reproduce the theta wave and firing patterns of different neuronal populations in the CA1, a sub-region of the hippocampus. The hippocampal theta oscillations (4-12 Hz) are an important electrophysiological rhythm that contributes in various cognitive functions, including navigation, memory, and novelty detection. The proposed CA1 neuromimetic circuit includes 100 linearized Pinsky-Rinzel neurons and 668 excitatory and inhibitory synapses on a field programmable gate array (FPGA). The implemented spiking neural network of the CA1 includes the main neuronal populations for the theta rhythm generation: excitatory pyramidal cells, PV+ basket cells, and Oriens Lacunosum-Moleculare (OLM) cells which are inhibitory interneurons. Moreover, the main inputs to the CA1 region from the entorhinal cortex via the perforant pathway, the CA3 via Schaffer collaterals, and the medial septum via fimbria-fornix are also implemented on the FPGA using a bursting leaky-integrate and fire (LIF) neuron model. The results of hardware realization show that the proposed CA1 neuromimetic circuit successfully reconstructs the theta oscillations and functionally illustrates the phase relations between firing responses of the different neuronal populations. It is also evaluated the impact of medial septum elimination on the firing patterns of the CA1 neuronal population and the theta wave's characteristics. This neuromorphic system can be considered as a potential platform that opens opportunities for neuroprosthetic applications in future works.
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89
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Hartwigsen G, Bengio Y, Bzdok D. How does hemispheric specialization contribute to human-defining cognition? Neuron 2021; 109:2075-2090. [PMID: 34004139 PMCID: PMC8273110 DOI: 10.1016/j.neuron.2021.04.024] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2021] [Revised: 03/22/2021] [Accepted: 04/26/2021] [Indexed: 12/30/2022]
Abstract
Uniquely human cognitive faculties arise from flexible interplay between specific local neural modules, with hemispheric asymmetries in functional specialization. Here, we discuss how these computational design principles provide a scaffold that enables some of the most advanced cognitive operations, such as semantic understanding of world structure, logical reasoning, and communication via language. We draw parallels to dual-processing theories of cognition by placing a focus on Kahneman's System 1 and System 2. We propose integration of these ideas with the global workspace theory to explain dynamic relay of information products between both systems. Deepening the current understanding of how neurocognitive asymmetry makes humans special can ignite the next wave of neuroscience-inspired artificial intelligence.
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Affiliation(s)
- Gesa Hartwigsen
- Max Planck Institute for Human Cognitive and Brain Sciences, Lise Meitner Research Group Cognition and Plasticity, Leipzig, Germany.
| | - Yoshua Bengio
- Mila, Montreal, QC, Canada; University of Montreal, Montreal, QC, Canada
| | - Danilo Bzdok
- Mila, Montreal, QC, Canada; Montreal Neurological Institute, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montreal, QC, Canada; Department of Biomedical Engineering, Faculty of Medicine, and School of Computer Science, McGill University, Montreal, QC, Canada.
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90
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Gledhill LJ, Babey AM. Synthesis of the Mechanisms of Opioid Tolerance: Do We Still Say NO? Cell Mol Neurobiol 2021; 41:927-948. [PMID: 33704603 PMCID: PMC11448615 DOI: 10.1007/s10571-021-01065-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Accepted: 02/12/2021] [Indexed: 10/21/2022]
Abstract
The use of morphine as a first-line agent for moderate-to-severe pain is limited by the development of analgesic tolerance. Initially opioid receptor desensitization in response to repeated stimulation, thought to underpin the establishment of tolerance, was linked to a compensatory increase in adenylate cyclase responsiveness. The subsequent demonstration of cross-talk between N-methyl-D-aspartate (NMDA) glutamate receptors and opioid receptors led to the recognition of a role for nitric oxide (NO), wherein blockade of NO synthesis could prevent tolerance developing. Investigations of the link between NO levels and opioid receptor desensitization implicated a number of events including kinase recruitment and peroxynitrite-mediated protein regulation. Recent experimental advances and the identification of new cellular constituents have expanded the potential signaling candidates to include unexpected, intermediary compounds not previously linked to this process such as zinc, histidine triad nucleotide-binding protein 1 (HINT1), micro-ribonucleic acid (mi-RNA) and regulator of G protein signaling Z (RGSZ). A further complication is a lack of consistency in the protocols used to create tolerance, with some using acute methods measured in minutes to hours and others using days. There is also an emphasis on the cellular changes that are extant only after tolerance has been established. Although a review of the literature demonstrates a lack of spatio-temporal detail, there still appears to be a pivotal role for nitric oxide, as well as both intracellular and intercellular cross-talk. The use of more consistent approaches to verify these underlying mechanism(s) could provide an avenue for targeted drug development to rescue opioid efficacy.
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Affiliation(s)
- Laura J Gledhill
- CURA Pharmacy, St. John of God Hospital, Bendigo, VIC, 3550, Australia
| | - Anna-Marie Babey
- Faculty of Medicine and Health, University of New England, Armidale, NSW, 2351, Australia.
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91
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Nakahira Y, Liu Q, Sejnowski TJ, Doyle JC. Diversity-enabled sweet spots in layered architectures and speed-accuracy trade-offs in sensorimotor control. Proc Natl Acad Sci U S A 2021; 118:e1916367118. [PMID: 34050009 PMCID: PMC8179159 DOI: 10.1073/pnas.1916367118] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Nervous systems sense, communicate, compute, and actuate movement using distributed components with severe trade-offs in speed, accuracy, sparsity, noise, and saturation. Nevertheless, brains achieve remarkably fast, accurate, and robust control performance due to a highly effective layered control architecture. Here, we introduce a driving task to study how a mountain biker mitigates the immediate disturbance of trail bumps and responds to changes in trail direction. We manipulated the time delays and accuracy of the control input from the wheel as a surrogate for manipulating the characteristics of neurons in the control loop. The observed speed-accuracy trade-offs motivated a theoretical framework consisting of two layers of control loops-a fast, but inaccurate, reflexive layer that corrects for bumps and a slow, but accurate, planning layer that computes the trajectory to follow-each with components having diverse speeds and accuracies within each physical level, such as nerve bundles containing axons with a wide range of sizes. Our model explains why the errors from two control loops are additive and shows how the errors in each control loop can be decomposed into the errors caused by the limited speeds and accuracies of the components. These results demonstrate that an appropriate diversity in the properties of neurons across layers helps to create "diversity-enabled sweet spots," so that both fast and accurate control is achieved using slow or inaccurate components.
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Affiliation(s)
- Yorie Nakahira
- Electrical and Computer Engineering, College of Engineering, Carnegie Mellon University, Pittsburgh, PA 15213
- Control and Dynamical Systems, Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA 91125
| | - Quanying Liu
- Control and Dynamical Systems, Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA 91125
- Department of Biomedical Engineering, Southern University of Science and Technology, Shenzhen 518055, China
| | - Terrence J Sejnowski
- Computational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037;
- Neurobiology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093
| | - John C Doyle
- Control and Dynamical Systems, Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA 91125;
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92
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Viruega H, Gaviria M. Functional Weight of Somatic and Cognitive Networks and Asymmetry of Compensatory Mechanisms: Collaboration or Divergency among Hemispheres after Cerebrovascular Accident? Life (Basel) 2021; 11:life11060495. [PMID: 34071611 PMCID: PMC8226640 DOI: 10.3390/life11060495] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 05/26/2021] [Accepted: 05/27/2021] [Indexed: 11/16/2022] Open
Abstract
The human brain holds highly sophisticated compensatory mechanisms relying on neuroplasticity. Neuronal degeneracy, redundancy, and brain network organization make the human nervous system more robust and evolvable to continuously guarantee an optimal environmental-related homeostasis. Nevertheless, after injury, restitution processes appear dissimilar, depending on the pathology. Following a cerebrovascular accident, asymmetry, within- and across-network compensation and interhemispheric inhibition are key features to functional recovery. In moderate-to-severe stroke, neurological outcome is often poor, and little is known about the paths that enable either an efficient collaboration among hemispheres or, on the contrary, an antagonism of adaptative responses. In this review, we aim to decipher key issues of ipsilesional and contralesional hemispheric functioning allowing the foundations of effective neurorehabilitation strategies.
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Affiliation(s)
- Hélène Viruega
- Institut Equiphoria, Combo Besso-Rouges Parets, 48500 La Canourgue, France;
- Alliance Equiphoria, 4, Résidence Le Sabot, 48500 La Canourgue, France
| | - Manuel Gaviria
- Alliance Equiphoria, 4, Résidence Le Sabot, 48500 La Canourgue, France
- Correspondence:
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93
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Song Y, Zhou D, Li S. Maximum Entropy Principle Underlies Wiring Length Distribution in Brain Networks. Cereb Cortex 2021; 31:4628-4641. [PMID: 33999124 DOI: 10.1093/cercor/bhab110] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Revised: 03/16/2021] [Accepted: 03/17/2021] [Indexed: 11/14/2022] Open
Abstract
A brain network comprises a substantial amount of short-range connections with an admixture of long-range connections. The portion of long-range connections in brain networks is observed to be quantitatively dissimilar across species. It is hypothesized that the length of connections is constrained by the spatial embedding of brain networks, yet fundamental principles that underlie the wiring length distribution remain unclear. By quantifying the structural diversity of a brain network using Shannon's entropy, here we show that the wiring length distribution across multiple species-including Drosophila, mouse, macaque, human, and C. elegans-follows the maximum entropy principle (MAP) under the constraints of limited wiring material and the spatial locations of brain areas or neurons. In addition, by considering stochastic axonal growth, we propose a network formation process capable of reproducing wiring length distributions of the 5 species, thereby implementing MAP in a biologically plausible manner. We further develop a generative model incorporating MAP, and show that, for the 5 species, the generated network exhibits high similarity to the real network. Our work indicates that the brain connectivity evolves to be structurally diversified by maximizing entropy to support efficient interareal communication, providing a potential organizational principle of brain networks.
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Affiliation(s)
- Yuru Song
- Neuroscience Graduate Program, University of California, San Diego, CA, USA
| | - Douglas Zhou
- School of Mathematical Sciences, Shanghai Jiao Tong University, Shanghai 200240, China.,Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China.,Ministry of Education Key Laboratory of Scientific and Engineering Computing, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Songting Li
- School of Mathematical Sciences, Shanghai Jiao Tong University, Shanghai 200240, China.,Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China.,Ministry of Education Key Laboratory of Scientific and Engineering Computing, Shanghai Jiao Tong University, Shanghai 200240, China
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94
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Barz CS, Garderes PM, Ganea DA, Reischauer S, Feldmeyer D, Haiss F. Functional and Structural Properties of Highly Responsive Somatosensory Neurons in Mouse Barrel Cortex. Cereb Cortex 2021; 31:4533-4553. [PMID: 33963394 PMCID: PMC8408454 DOI: 10.1093/cercor/bhab104] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 03/12/2021] [Accepted: 03/24/2021] [Indexed: 11/14/2022] Open
Abstract
Sparse population activity is a well-known feature of supragranular sensory neurons in neocortex. The mechanisms underlying sparseness are not well understood because a direct link between the neurons activated in vivo, and their cellular properties investigated in vitro has been missing. We used two-photon calcium imaging to identify a subset of neurons in layer L2/3 (L2/3) of mouse primary somatosensory cortex that are highly active following principal whisker vibrotactile stimulation. These high responders (HRs) were then tagged using photoconvertible green fluorescent protein for subsequent targeting in the brain slice using intracellular patch-clamp recordings and biocytin staining. This approach allowed us to investigate the structural and functional properties of HRs that distinguish them from less active control cells. Compared to less responsive L2/3 neurons, HRs displayed increased levels of stimulus-evoked and spontaneous activity, elevated noise and spontaneous pairwise correlations, and stronger coupling to the population response. Intrinsic excitability was reduced in HRs, while we found no evidence for differences in other electrophysiological and morphological parameters. Thus, the choice of which neurons participate in stimulus encoding may be determined largely by network connectivity rather than by cellular structure and function.
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Affiliation(s)
- C S Barz
- Institute of Neuroscience and Medicine, INM-10, Research Centre Jülich, 52425 Jülich, Germany.,Department of Psychiatry, Psychotherapy and Psychosomatics, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Jülich-Aachen Research Alliance - Translational Brain Medicine, 52074 Aachen, Germany.,IZKF Aachen, Medical School, RWTH Aachen University, 52074 Aachen, Germany
| | - P M Garderes
- IZKF Aachen, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Department of Neuropathology, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Department of Ophthalmology, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Unit of Neural Circuits Dynamics and Decision Making, Institut Pasteur, 75015 Paris, France
| | - D A Ganea
- IZKF Aachen, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Department of Neuropathology, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Department of Ophthalmology, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Biomedical Department, University of Basel, 4056 Basel, Switzerland
| | - S Reischauer
- Medical Clinic I, (Cardiology/Angiology) and Campus Kerckhoff, Justus-Liebig-University Giessen, 35390 Giessen Germany.,Department of Developmental Genetics, Max Planck Institute for Heart and Lung Research, 61231 Bad Nauheim, Germany.,Cardio-Pulmonary Institute (CPI), 35392 Giessen, Germany
| | - D Feldmeyer
- Institute of Neuroscience and Medicine, INM-10, Research Centre Jülich, 52425 Jülich, Germany.,Department of Psychiatry, Psychotherapy and Psychosomatics, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Jülich-Aachen Research Alliance - Translational Brain Medicine, 52074 Aachen, Germany
| | - F Haiss
- IZKF Aachen, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Department of Neuropathology, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Department of Ophthalmology, Medical School, RWTH Aachen University, 52074 Aachen, Germany.,Unit of Neural Circuits Dynamics and Decision Making, Institut Pasteur, 75015 Paris, France
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95
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Levy WB, Calvert VG. Communication consumes 35 times more energy than computation in the human cortex, but both costs are needed to predict synapse number. Proc Natl Acad Sci U S A 2021; 118:e2008173118. [PMID: 33906943 PMCID: PMC8106317 DOI: 10.1073/pnas.2008173118] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
Darwinian evolution tends to produce energy-efficient outcomes. On the other hand, energy limits computation, be it neural and probabilistic or digital and logical. Taking a particular energy-efficient viewpoint, we define neural computation and make use of an energy-constrained computational function. This function can be optimized over a variable that is proportional to the number of synapses per neuron. This function also implies a specific distinction between adenosine triphosphate (ATP)-consuming processes, especially computation per se vs. the communication processes of action potentials and transmitter release. Thus, to apply this mathematical function requires an energy audit with a particular partitioning of energy consumption that differs from earlier work. The audit points out that, rather than the oft-quoted 20 W of glucose available to the human brain, the fraction partitioned to cortical computation is only 0.1 W of ATP [L. Sokoloff, Handb. Physiol. Sect. I Neurophysiol. 3, 1843-1864 (1960)] and [J. Sawada, D. S. Modha, "Synapse: Scalable energy-efficient neurosynaptic computing" in Application of Concurrency to System Design (ACSD) (2013), pp. 14-15]. On the other hand, long-distance communication costs are 35-fold greater, 3.5 W. Other findings include 1) a [Formula: see text]-fold discrepancy between biological and lowest possible values of a neuron's computational efficiency and 2) two predictions of N, the number of synaptic transmissions needed to fire a neuron (2,500 vs. 2,000).
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Affiliation(s)
- William B Levy
- Department of Neurosurgery, University of Virginia, Charlottesville, VA 22908;
- Department of Psychology, University of Virginia, Charlottesville, VA 22904
| | - Victoria G Calvert
- College of Arts and Sciences, University of Virginia, Charlottesville, VA 22903
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96
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Ma J, Zhang J, Lin Y, Dai Z. Cost-efficiency trade-offs of the human brain network revealed by a multiobjective evolutionary algorithm. Neuroimage 2021; 236:118040. [PMID: 33852939 DOI: 10.1016/j.neuroimage.2021.118040] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 03/15/2021] [Accepted: 04/04/2021] [Indexed: 10/21/2022] Open
Abstract
It is widely believed that the formation of brain network architecture is under the pressure of optimal trade-off between reducing wiring cost and promoting communication efficiency. However, the questions of whether this trade-off exists in empirical human brain structural networks and, if so, how it takes effect are still not well understood. Here, we employed a multiobjective evolutionary algorithm to directly and quantitatively explore the cost-efficiency trade-off in human brain structural networks. Using this algorithm, we generated a population of synthetic networks with optimal but diverse cost-efficiency trade-offs. It was found that these synthetic networks could not only reproduce a large portion of connections in the empirical brain structural networks but also embed a resembling small-world organization. Moreover, the synthetic and empirical brain networks were found similar in terms of the spatial arrangement of hub regions and the modular structure, which are two important topological features widely assumed to be outcomes of cost-efficiency trade-offs. The synthetic networks had high robustness against random attacks as the empirical brain networks did. Additionally, we also revealed some differences between the synthetic networks and the empirical brain networks, including lower segregated processing capacity and weaker robustness against targeted attacks in the synthetic networks. These findings provide direct and quantitative evidence that the structure of human brain networks is indeed largely influenced by optimal cost-efficiency trade-offs. We also suggest that some additional factors (e.g., segregated processing capacity) might jointly determine the network organization with cost and efficiency.
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Affiliation(s)
- Junji Ma
- Department of Psychology, Sun Yat-sen University, Guangzhou 510006, China
| | - Jinbo Zhang
- Department of Psychology, Sun Yat-sen University, Guangzhou 510006, China
| | - Ying Lin
- Department of Psychology, Sun Yat-sen University, Guangzhou 510006, China.
| | - Zhengjia Dai
- Department of Psychology, Sun Yat-sen University, Guangzhou 510006, China.
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97
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Tobore TO. On the theory of mental representation block. a novel perspective on learning and behavior. Commun Integr Biol 2021; 14:41-50. [PMID: 33796209 PMCID: PMC7971303 DOI: 10.1080/19420889.2021.1898752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Revised: 03/01/2021] [Accepted: 03/01/2021] [Indexed: 12/03/2022] Open
Abstract
Understanding the mechanisms behind memory, learning, and behavior is crucial to human development and significant research has been done in this area. Classical and operant conditioning and other theories of learning have elucidated different mechanisms of learning and how it modulates behavior. Even with advances in this area, questions remain on how to unlearn faulty ideas or extinguish maladaptive behaviors. In this paper, a novel theory to improve our understanding of this area is proposed. The theory proposes that as a consequence of the brain's energy efficiency evolutionary adaptations, all learning following memory consolidation, reconsolidation, and repeated reinforcements or strengthening over time, results in a phenomenon called mental representation block. The implications of this block on learning and behavior are significant and broad and include cognitive biases, belief in a creator or God, close-mindedness, dogmatism, physician misdiagnosis, racism, homophobia, and transphobia, susceptibility to deception and indoctrination, hate and love, artificial intelligence and creativity.
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98
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Jiang X, Zhang T, Zhang S, Kendrick KM, Liu T. Fundamental functional differences between gyri and sulci: implications for brain function, cognition, and behavior. PSYCHORADIOLOGY 2021; 1:23-41. [PMID: 38665307 PMCID: PMC10939337 DOI: 10.1093/psyrad/kkab002] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 01/24/2021] [Accepted: 02/02/2021] [Indexed: 04/28/2024]
Abstract
Folding of the cerebral cortex is a prominent characteristic of mammalian brains. Alterations or deficits in cortical folding are strongly correlated with abnormal brain function, cognition, and behavior. Therefore, a precise mapping between the anatomy and function of the brain is critical to our understanding of the mechanisms of brain structural architecture in both health and diseases. Gyri and sulci, the standard nomenclature for cortical anatomy, serve as building blocks to make up complex folding patterns, providing a window to decipher cortical anatomy and its relation with brain functions. Huge efforts have been devoted to this research topic from a variety of disciplines including genetics, cell biology, anatomy, neuroimaging, and neurology, as well as involving computational approaches based on machine learning and artificial intelligence algorithms. However, despite increasing progress, our understanding of the functional anatomy of gyro-sulcal patterns is still in its infancy. In this review, we present the current state of this field and provide our perspectives of the methodologies and conclusions concerning functional differentiation between gyri and sulci, as well as the supporting information from genetic, cell biology, and brain structure research. In particular, we will further present a proposed framework for attempting to interpret the dynamic mechanisms of the functional interplay between gyri and sulci. Hopefully, this review will provide a comprehensive summary of anatomo-functional relationships in the cortical gyro-sulcal system together with a consideration of how these contribute to brain function, cognition, and behavior, as well as to mental disorders.
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Affiliation(s)
- Xi Jiang
- School of Life Science and Technology, MOE Key Laboratory for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Tuo Zhang
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China
| | - Shu Zhang
- Center for Brain and Brain-Inspired Computing Research, School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China
| | - Keith M Kendrick
- School of Life Science and Technology, MOE Key Laboratory for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Tianming Liu
- Cortical Architecture Imaging and Discovery Laboratory, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA 30605, USA
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99
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Bizopoulos P, Koutsouris D. Sparsely Activated Networks. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2021; 32:1304-1313. [PMID: 32310790 DOI: 10.1109/tnnls.2020.2984514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Previous literature on unsupervised learning focused on designing structural priors with the aim of learning meaningful features. However, this was done without considering the description length of the learned representations, which is a direct and unbiased measure of the model complexity. In this article, first, we introduce the φ metric that evaluates unsupervised models based on their reconstruction accuracy and the degree of compression of their internal representations. We then present and define two activation functions [Identity and rectified linear unit (ReLU)] as a base of reference and three sparse activation functions (top-k absolutes, Extrema-Pool indices, and Extrema) as candidate structures that minimize the previously defined φ . We last present sparsely activated networks (SANs) that consist of kernels with shared weights that, during encoding, are convolved with the input and then passed through a sparse activation function. During decoding, the same weights are convolved with the sparse activation map, and subsequently, the partial reconstructions from each weight are summed to reconstruct the input. We compare SANs using the five previously defined activation functions on a variety of data sets (Physionet, UCI-epilepsy, MNIST, and FMNIST) and show that models that are selected using φ have small description representation length and consist of interpretable kernels.
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Causal modulation of right hemisphere fronto-parietal phase synchrony with Transcranial Magnetic Stimulation during a conscious visual detection task. Sci Rep 2021; 11:3807. [PMID: 33589681 PMCID: PMC7884390 DOI: 10.1038/s41598-020-79812-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Accepted: 12/03/2020] [Indexed: 12/24/2022] Open
Abstract
Correlational evidence in non-human primates has reported increases of fronto-parietal high-beta (22-30 Hz) synchrony during the top-down allocation of visuo-spatial attention. But may inter-regional synchronization at this specific frequency band provide a causal mechanism by which top-down attentional processes facilitate conscious visual perception? To address this question, we analyzed electroencephalographic (EEG) signals from a group of healthy participants who performed a conscious visual detection task while we delivered brief (4 pulses) rhythmic (30 Hz) or random bursts of Transcranial Magnetic Stimulation (TMS) to the right Frontal Eye Field (FEF) prior to the onset of a lateralized target. We report increases of inter-regional synchronization in the high-beta band (25-35 Hz) between the electrode closest to the stimulated region (the right FEF) and right parietal EEG leads, and increases of local inter-trial coherence within the same frequency band over bilateral parietal EEG contacts, both driven by rhythmic but not random TMS patterns. Such increases were accompained by improvements of conscious visual sensitivity for left visual targets in the rhythmic but not the random TMS condition. These outcomes suggest that high-beta inter-regional synchrony can be modulated non-invasively and that high-beta oscillatory activity across the right dorsal fronto-parietal network may contribute to the facilitation of conscious visual perception. Our work supports future applications of non-invasive brain stimulation to restore impaired visually-guided behaviors by operating on top-down attentional modulatory mechanisms.
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