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For: Kramer EB, Farabaugh PJ. The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 2007;13:87-96. [PMID: 17095544 PMCID: PMC1705757 DOI: 10.1261/rna.294907] [Citation(s) in RCA: 351] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]

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Number Cited by Other Article(s)
51
Durmaz YT, Shatadal A, Friend K. Geneticin reduces mRNA stability. PLoS One 2022;17:e0272058. [PMID: 35901009 PMCID: PMC9333311 DOI: 10.1371/journal.pone.0272058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Accepted: 07/12/2022] [Indexed: 11/30/2022]  Open
52
Sun M, Zhang J. Preferred synonymous codons are translated more accurately: Proteomic evidence, among-species variation, and mechanistic basis. SCIENCE ADVANCES 2022;8:eabl9812. [PMID: 35857447 PMCID: PMC9258949 DOI: 10.1126/sciadv.abl9812] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Accepted: 05/20/2022] [Indexed: 06/15/2023]
53
The Aminoacyl-tRNA Synthetase and tRNA Expression Levels Are Deregulated in Cancer and Correlate Independently with Patient Survival. Curr Issues Mol Biol 2022;44:3001-3017. [PMID: 35877431 PMCID: PMC9324904 DOI: 10.3390/cimb44070207] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 06/20/2022] [Accepted: 06/24/2022] [Indexed: 11/25/2022]  Open
54
Shafat Z, Ahmed A, Parvez MK, Parveen S. Analysis of codon usage patterns in open reading frame 4 of hepatitis E viruses. BENI-SUEF UNIVERSITY JOURNAL OF BASIC AND APPLIED SCIENCES 2022;11:65. [PMID: 35573872 PMCID: PMC9086417 DOI: 10.1186/s43088-022-00244-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Accepted: 04/19/2022] [Indexed: 12/01/2022]  Open
55
Allen SR, Stewart RK, Rogers M, Ruiz IJ, Cohen E, Laederach A, Counter CM, Sawyer JK, Fox DT. Distinct responses to rare codons in select Drosophila tissues. eLife 2022;11:e76893. [PMID: 35522036 PMCID: PMC9116940 DOI: 10.7554/elife.76893] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Accepted: 05/05/2022] [Indexed: 11/13/2022]  Open
56
Deogharia M, Gurha P. Thermophiles reveal the clues to longevity: precise protein synthesis. THE JOURNAL OF CARDIOVASCULAR AGING 2022;2:14. [PMID: 36778790 PMCID: PMC9912815 DOI: 10.20517/jca.2021.38] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
57
Diffusion control in biochemical specificity. Biophys J 2022;121:1541-1548. [PMID: 35278424 PMCID: PMC9072584 DOI: 10.1016/j.bpj.2022.03.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 09/28/2021] [Accepted: 03/04/2022] [Indexed: 11/20/2022]  Open
58
Palazzo AF, Kejiou NS. Non-Darwinian Molecular Biology. Front Genet 2022;13:831068. [PMID: 35251134 PMCID: PMC8888898 DOI: 10.3389/fgene.2022.831068] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 01/24/2022] [Indexed: 12/14/2022]  Open
59
Rozik P, Szabla R, Lant JT, Kiri R, Wright DE, Junop M, O'Donoghue P. A novel fluorescent reporter sensitive to serine mis-incorporation. RNA Biol 2022;19:221-233. [PMID: 35167412 PMCID: PMC8855846 DOI: 10.1080/15476286.2021.2015173] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
60
Muronetz VI, Pozdyshev DV, Medvedeva MV, Sevostyanova IA. Potential Effect of Post-Transcriptional Substitutions of Tyrosine for Cysteine Residues on Transformation of Amyloidogenic Proteins. BIOCHEMISTRY. BIOKHIMIIA 2022;87:170-178. [PMID: 35508908 DOI: 10.1134/s0006297922020080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 01/12/2022] [Accepted: 01/12/2022] [Indexed: 06/14/2023]
61
Model of Genetic Code Structure Evolution under Various Types of Codon Reading. Int J Mol Sci 2022;23:ijms23031690. [PMID: 35163612 PMCID: PMC8835785 DOI: 10.3390/ijms23031690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 01/23/2022] [Accepted: 01/25/2022] [Indexed: 11/28/2022]  Open
62
Clifton BE, Fariz MA, Uechi GI, Laurino P. Evolutionary repair reveals an unexpected role of the tRNA modification m1G37 in aminoacylation. Nucleic Acids Res 2021;49:12467-12485. [PMID: 34761260 PMCID: PMC8643618 DOI: 10.1093/nar/gkab1067] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Revised: 10/13/2021] [Accepted: 10/20/2021] [Indexed: 11/13/2022]  Open
63
Hovorková M, Kulik N, Konvalinková D, Petrásková L, Křen V, Bojarová P. Mutagenesis of Catalytic Nucleophile of β‐Galactosidase Retains Residual Hydrolytic Activity and Affords a Transgalactosidase. ChemCatChem 2021. [DOI: 10.1002/cctc.202101107] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
64
Patenall BL, Hathaway HJ, Laabei M, Young AE, Thet NT, Jenkins ATA, Short RD, Allinson SL. Assessment of mutations induced by cold atmospheric plasma jet treatment relative to known mutagens in Escherichia coli. Mutagenesis 2021;36:380-387. [PMID: 34459491 DOI: 10.1093/mutage/geab030] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 08/29/2021] [Indexed: 11/12/2022]  Open
65
Komar AA. A Code Within a Code: How Codons Fine-Tune Protein Folding in the Cell. BIOCHEMISTRY (MOSCOW) 2021;86:976-991. [PMID: 34488574 DOI: 10.1134/s0006297921080083] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
66
Pawlak K, Wnetrzak M, Mackiewicz D, Mackiewicz P, Błażej P. Models of genetic code structure evolution with variable number of coded labels. Biosystems 2021;210:104528. [PMID: 34492316 DOI: 10.1016/j.biosystems.2021.104528] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 08/26/2021] [Accepted: 08/27/2021] [Indexed: 10/20/2022]
67
Zheng J, Guo N, Wagner A. Mistranslation reduces mutation load in evolving proteins through negative epistasis with DNA mutations. Mol Biol Evol 2021;38:4792-4804. [PMID: 34255074 PMCID: PMC8557407 DOI: 10.1093/molbev/msab206] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
68
Zheng J, Bratulic S, Lischer HEL, Wagner A. Mistranslation can promote the exploration of alternative evolutionary trajectories in enzyme evolution. J Evol Biol 2021;34:1302-1315. [PMID: 34145657 PMCID: PMC8457080 DOI: 10.1111/jeb.13892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Revised: 05/19/2021] [Accepted: 06/16/2021] [Indexed: 12/01/2022]
69
Clinically Relevant Mutations of Mycobacterial GatCAB Inform Regulation of Translational Fidelity. mBio 2021;12:e0110021. [PMID: 34225495 PMCID: PMC8406222 DOI: 10.1128/mbio.01100-21] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
70
Fabret C, Namy O. Translational accuracy of a tethered ribosome. Nucleic Acids Res 2021;49:5308-5318. [PMID: 33950196 PMCID: PMC8136817 DOI: 10.1093/nar/gkab259] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 03/27/2021] [Accepted: 05/04/2021] [Indexed: 01/09/2023]  Open
71
Malinova I, Zupok A, Massouh A, Schöttler MA, Meyer EH, Yaneva-Roder L, Szymanski W, Rößner M, Ruf S, Bock R, Greiner S. Correction of frameshift mutations in the atpB gene by translational recoding in chloroplasts of Oenothera and tobacco. THE PLANT CELL 2021;33:1682-1705. [PMID: 33561268 PMCID: PMC8254509 DOI: 10.1093/plcell/koab050] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 02/02/2021] [Indexed: 05/10/2023]
72
Putting amino acids onto tRNAs: The aminoacyl-tRNA synthetases as catalysts. Enzymes 2021;48:39-68. [PMID: 33837710 DOI: 10.1016/bs.enz.2020.06.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
73
Huang X, Li Y, Zhou RM, Cui SJ, Cao SR, Huo XR, Wang N. CDH1 gene rs1801552 C/T polymorphism increases susceptibility to esophageal squamous cell carcinoma but not to gastric cardiac adenocarcinoma. Cancer Invest 2021;39:812-818. [PMID: 33888005 DOI: 10.1080/07357907.2021.1916520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
74
Translation error clusters induced by aminoglycoside antibiotics. Nat Commun 2021;12:1830. [PMID: 33758186 PMCID: PMC7987974 DOI: 10.1038/s41467-021-21942-6] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 02/08/2021] [Indexed: 02/04/2023]  Open
75
Berg MD, Brandl CJ. Transfer RNAs: diversity in form and function. RNA Biol 2021;18:316-339. [PMID: 32900285 PMCID: PMC7954030 DOI: 10.1080/15476286.2020.1809197] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 07/31/2020] [Accepted: 08/08/2020] [Indexed: 12/11/2022]  Open
76
Rietmeyer L, Fix-Boulier N, Le Fournis C, Iannazzo L, Kitoun C, Patin D, Mengin-Lecreulx D, Ethève-Quelquejeu M, Arthur M, Fonvielle M. Partition of tRNAGly isoacceptors between protein and cell-wall peptidoglycan synthesis in Staphylococcus aureus. Nucleic Acids Res 2021;49:684-699. [PMID: 33367813 PMCID: PMC7826273 DOI: 10.1093/nar/gkaa1242] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 12/04/2020] [Accepted: 12/09/2020] [Indexed: 11/21/2022]  Open
77
Samhita L, K Raval P, Stephenson G, Thutupalli S, Agashe D. The impact of mistranslation on phenotypic variability and fitness. Evolution 2021;75:1201-1217. [PMID: 33491193 PMCID: PMC8248024 DOI: 10.1111/evo.14179] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 10/25/2020] [Accepted: 12/20/2020] [Indexed: 01/20/2023]
78
Steele JR, Italiano CJ, Phillips CR, Violi JP, Pu L, Rodgers KJ, Padula MP. Misincorporation Proteomics Technologies: A Review. Proteomes 2021;9:2. [PMID: 33494504 PMCID: PMC7924376 DOI: 10.3390/proteomes9010002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 01/11/2021] [Accepted: 01/18/2021] [Indexed: 12/15/2022]  Open
79
Liu Y, Yang Q, Zhao F. Synonymous but Not Silent: The Codon Usage Code for Gene Expression and Protein Folding. Annu Rev Biochem 2021;90:375-401. [PMID: 33441035 DOI: 10.1146/annurev-biochem-071320-112701] [Citation(s) in RCA: 104] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
80
de la Torre D, Chin JW. Reprogramming the genetic code. Nat Rev Genet 2020;22:169-184. [PMID: 33318706 DOI: 10.1038/s41576-020-00307-7] [Citation(s) in RCA: 168] [Impact Index Per Article: 33.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/05/2020] [Indexed: 01/09/2023]
81
Sawyer JK, Kabiri Z, Montague RA, Allen SR, Stewart R, Paramore SV, Cohen E, Zaribafzadeh H, Counter CM, Fox DT. Exploiting codon usage identifies intensity-specific modifiers of Ras/MAPK signaling in vivo. PLoS Genet 2020;16:e1009228. [PMID: 33296356 PMCID: PMC7752094 DOI: 10.1371/journal.pgen.1009228] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Revised: 12/21/2020] [Accepted: 10/27/2020] [Indexed: 01/05/2023]  Open
82
Newaz K, Wright G, Piland J, Li J, Clark PL, Emrich SJ, Milenković T. Network analysis of synonymous codon usage. Bioinformatics 2020;36:4876-4884. [PMID: 32609328 DOI: 10.1093/bioinformatics/btaa603] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Revised: 05/05/2020] [Accepted: 06/22/2020] [Indexed: 12/25/2022]  Open
83
The Boggarts of biology: how non-genetic changes influence the genotype. Curr Genet 2020;67:65-77. [PMID: 33037901 DOI: 10.1007/s00294-020-01108-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Revised: 09/14/2020] [Accepted: 09/15/2020] [Indexed: 01/21/2023]
84
Zhu Y, Berg MD, Yang P, Loll-Krippleber R, Brown GW, Brandl CJ. Mistranslating tRNA identifies a deleterious S213P mutation in theSaccharomyces cerevisiaeeco1-1allele. Biochem Cell Biol 2020;98:624-630. [DOI: 10.1139/bcb-2020-0151] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
85
Cai RJ, Su HW, Li YY, Javid B. Forward Genetics Reveals a gatC-gatA Fusion Polypeptide Causes Mistranslation and Rifampicin Tolerance in Mycobacterium smegmatis. Front Microbiol 2020;11:577756. [PMID: 33072044 PMCID: PMC7541841 DOI: 10.3389/fmicb.2020.577756] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 09/04/2020] [Indexed: 12/26/2022]  Open
86
Liu Y. A code within the genetic code: codon usage regulates co-translational protein folding. Cell Commun Signal 2020;18:145. [PMID: 32907610 PMCID: PMC7488015 DOI: 10.1186/s12964-020-00642-6] [Citation(s) in RCA: 131] [Impact Index Per Article: 26.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Accepted: 08/10/2020] [Indexed: 01/05/2023]  Open

Video abstract

  • Yi Liu
    • Department of Physiology, ND13.214A, UT Southwestern Medical Center, 5323 Harry Hines Blvd., Dallas, TX, 75390-9040, USA.
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87
Pernod K, Schaeffer L, Chicher J, Hok E, Rick C, Geslain R, Eriani G, Westhof E, Ryckelynck M, Martin F. The nature of the purine at position 34 in tRNAs of 4-codon boxes is correlated with nucleotides at positions 32 and 38 to maintain decoding fidelity. Nucleic Acids Res 2020;48:6170-6183. [PMID: 32266934 PMCID: PMC7293025 DOI: 10.1093/nar/gkaa221] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Revised: 03/19/2020] [Accepted: 03/25/2020] [Indexed: 12/29/2022]  Open
88
Simms CL, Yan LL, Qiu JK, Zaher HS. Ribosome Collisions Result in +1 Frameshifting in the Absence of No-Go Decay. Cell Rep 2020;28:1679-1689.e4. [PMID: 31412239 PMCID: PMC6701860 DOI: 10.1016/j.celrep.2019.07.046] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 06/17/2019] [Accepted: 07/15/2019] [Indexed: 12/22/2022]  Open
89
Cai X, Zhan Y, Cao Z, Yan B, Cai J. Expression of ribosomal protection protein RppA is regulated by a ribosome-dependent ribo-regulator and two mistranslation products. Environ Microbiol 2020;23:696-712. [PMID: 32592275 DOI: 10.1111/1462-2920.15143] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2020] [Revised: 06/23/2020] [Accepted: 06/24/2020] [Indexed: 01/05/2023]
90
Premature termination codon readthrough in Drosophila varies in a developmental and tissue-specific manner. Sci Rep 2020;10:8485. [PMID: 32444687 PMCID: PMC7244557 DOI: 10.1038/s41598-020-65348-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Accepted: 03/31/2020] [Indexed: 12/29/2022]  Open
91
Schwark DG, Schmitt MA, Biddle W, Fisk JD. The Influence of Competing tRNA Abundance on Translation: Quantifying the Efficiency of Sense Codon Reassignment at Rarely Used Codons. Chembiochem 2020;21:2274-2286. [PMID: 32203635 DOI: 10.1002/cbic.202000052] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 03/12/2020] [Indexed: 11/07/2022]
92
Samhita L, Raval PK, Agashe D. Global mistranslation increases cell survival under stress in Escherichia coli. PLoS Genet 2020;16:e1008654. [PMID: 32150542 PMCID: PMC7082066 DOI: 10.1371/journal.pgen.1008654] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Revised: 03/19/2020] [Accepted: 02/05/2020] [Indexed: 12/23/2022]  Open
93
Pollo-Oliveira L, Klassen R, Davis N, Ciftci A, Bacusmo JM, Martinelli M, DeMott MS, Begley TJ, Dedon PC, Schaffrath R, de Crécy-Lagard V. Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast. Biomolecules 2020;10:E322. [PMID: 32085421 PMCID: PMC7072221 DOI: 10.3390/biom10020322] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 02/10/2020] [Accepted: 02/11/2020] [Indexed: 12/20/2022]  Open
94
Piñeros WD, Tlusty T. Kinetic proofreading and the limits of thermodynamic uncertainty. Phys Rev E 2020;101:022415. [PMID: 32168722 DOI: 10.1103/physreve.101.022415] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 01/24/2020] [Indexed: 06/10/2023]
95
Antibiotic resistance by high-level intrinsic suppression of a frameshift mutation in an essential gene. Proc Natl Acad Sci U S A 2020;117:3185-3191. [PMID: 31992637 PMCID: PMC7022156 DOI: 10.1073/pnas.1919390117] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
96
Tawfik DS, Gruic-Sovulj I. How evolution shapes enzyme selectivity - lessons from aminoacyl-tRNA synthetases and other amino acid utilizing enzymes. FEBS J 2020;287:1284-1305. [PMID: 31891445 DOI: 10.1111/febs.15199] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2019] [Revised: 12/08/2019] [Accepted: 12/30/2019] [Indexed: 12/21/2022]
97
Yang Q, Yu CH, Zhao F, Dang Y, Wu C, Xie P, Sachs MS, Liu Y. eRF1 mediates codon usage effects on mRNA translation efficiency through premature termination at rare codons. Nucleic Acids Res 2019;47:9243-9258. [PMID: 31410471 PMCID: PMC6755126 DOI: 10.1093/nar/gkz710] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Revised: 07/23/2019] [Accepted: 08/02/2019] [Indexed: 12/16/2022]  Open
98
Nucleotide composition affects codon usage toward the 3'-end. PLoS One 2019;14:e0225633. [PMID: 31800603 PMCID: PMC6892556 DOI: 10.1371/journal.pone.0225633] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Accepted: 11/09/2019] [Indexed: 12/24/2022]  Open
99
Hunt R, Hettiarachchi G, Katneni U, Hernandez N, Holcomb D, Kames J, Alnifaidy R, Lin B, Hamasaki-Katagiri N, Wesley A, Kafri T, Morris C, Bouché L, Panico M, Schiller T, Ibla J, Bar H, Ismail A, Morris H, Komar A, Kimchi-Sarfaty C. A Single Synonymous Variant (c.354G>A [p.P118P]) in ADAMTS13 Confers Enhanced Specific Activity. Int J Mol Sci 2019;20:ijms20225734. [PMID: 31731663 PMCID: PMC6888508 DOI: 10.3390/ijms20225734] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Revised: 11/09/2019] [Accepted: 11/13/2019] [Indexed: 12/18/2022]  Open
100
Berg MD, Zhu Y, Genereaux J, Ruiz BY, Rodriguez-Mias RA, Allan T, Bahcheli A, Villén J, Brandl CJ. Modulating Mistranslation Potential of tRNASer in Saccharomyces cerevisiae. Genetics 2019;213:849-863. [PMID: 31484688 PMCID: PMC6827378 DOI: 10.1534/genetics.119.302525] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Accepted: 09/01/2019] [Indexed: 12/15/2022]  Open
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